BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,865,091	T→C	T162A (ACC→GCC)	rpoS ←	sigma S factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,865,091	0	T	C	100.0%	1170.5 / NA	344	T162A (ACC→GCC)	rpoS	sigma S factor
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (183/161); total (183/161)

Only 100 of 359 total aligned reads displayed.

CATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCT  >  NC_000913/2865001‑2865180

cATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGctt                                                                                         <  1:4839942/93‑1 (MQ=255)

cATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGctt                                                                                         <  2:7894503/93‑1 (MQ=255)

 aTGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTg                                                                                        >  2:4877610/1‑93 (MQ=255)

      ccAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCa                                                                                   <  2:207084/93‑1 (MQ=255)

       cAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCAt                                                                                  >  1:234909/1‑93 (MQ=255)

       cAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCAt                                                                                  >  2:8350724/1‑93 (MQ=255)

       cAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCAt                                                                                  >  2:7356582/1‑93 (MQ=255)

       cAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCAt                                                                                  >  2:274759/1‑93 (MQ=255)

        aGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATa                                                                                 <  1:688169/93‑1 (MQ=255)

         gCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATaa                                                                                >  2:7801380/1‑93 (MQ=255)

          cTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAAt                                                                               <  2:6643463/93‑1 (MQ=255)

          cTTATGGGACAACTCACGTGCGGATCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGAAAGAGCTTGGTTCATAAt                                                                               >  1:4532931/1‑93 (MQ=255)

           ttATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATc                                                                              >  1:944882/1‑93 (MQ=255)

           ttATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATc                                                                              <  2:577944/93‑1 (MQ=255)

           ttATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATc                                                                              >  2:2790323/1‑93 (MQ=255)

               gggACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGccc                                                                          <  2:1621100/93‑1 (MQ=255)

                ggACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCg                                                                         >  2:6954872/1‑93 (MQ=255)

                  gcAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGtt                                                                       <  1:4440317/92‑1 (MQ=255)

                   cAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTc                                                                      <  1:2482622/93‑1 (MQ=255)

                   cAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTc                                                                      >  2:1757189/1‑93 (MQ=255)

                      cTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAAt                                                                   >  1:2175656/1‑93 (MQ=255)

                       tCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATc                                                                  <  2:6829169/93‑1 (MQ=255)

                          cGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTc                                                               <  2:6148326/93‑1 (MQ=255)

                           gTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCt                                                              <  2:3172232/93‑1 (MQ=255)

                           gTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCt                                                              >  2:8678676/1‑93 (MQ=255)

                           gTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCt                                                              <  2:3763370/93‑1 (MQ=255)

                           gTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCt                                                              <  2:4214414/93‑1 (MQ=255)

                            tGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTg                                                             <  1:4129208/93‑1 (MQ=255)

                             gCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTgg                                                            <  1:8748567/93‑1 (MQ=255)

                              cGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCtcgg                                                           >  1:7899957/1‑90 (MQ=255)

                              cGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGc                                                           <  1:8617600/93‑1 (MQ=255)

                               ggTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGca                                                          >  1:7177186/1‑92 (MQ=255)

                               ggTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCg                                                          >  2:4989320/1‑93 (MQ=255)

                               ggTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCg                                                          <  2:2239368/93‑1 (MQ=255)

                                gTTCGCAGTTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGa                                                         <  2:537030/93‑1 (MQ=255)

                                   cGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATc                                                      <  2:8562590/93‑1 (MQ=255)

                                   cGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATc                                                      <  1:3180129/93‑1 (MQ=255)

                                    gCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATcc                                                     >  1:7424528/1‑93 (MQ=255)

                                     cAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccc                                                    >  1:4269733/1‑92 (MQ=255)

                                      aGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccac                                                   <  1:6004309/93‑1 (MQ=255)

                                       ggTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacc                                                  >  1:6258216/1‑93 (MQ=255)

                                       ggTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacc                                                  <  2:7189979/93‑1 (MQ=255)

                                       ggTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacc                                                  >  2:8212829/1‑93 (MQ=255)

                                        gTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacca                                                 >  2:5143467/1‑93 (MQ=255)

                                        gTAAACGTTCAGCTCCTGTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacca                                                 <  1:2672671/93‑1 (MQ=255)

                                         tAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAg                                                >  2:3377864/1‑93 (MQ=255)

                                         tAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAg                                                >  1:1747751/1‑93 (MQ=255)

                                          aaaCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAgg                                               >  1:5287393/1‑93 (MQ=255)

                                          aaaCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAgg                                               >  2:8156321/1‑93 (MQ=255)

                                          aaaCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAgg                                               >  1:1229903/1‑93 (MQ=255)

                                          aaaCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAAGCCACCCgg                                               >  2:4689113/1‑93 (MQ=255)

                                           aaCGTTCAGCTCCTTTACGATGTGAATCGGCAAAGGAATAGTGCGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGt                                              <  1:4651748/93‑1 (MQ=255)

                                           aaCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGt                                              >  2:1378402/1‑93 (MQ=255)

                                           aaCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGt                                              <  2:7557430/93‑1 (MQ=255)

                                            aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtt                                             >  2:1139224/1‑93 (MQ=255)

                                            aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtt                                             >  1:6762373/1‑93 (MQ=255)

                                            aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtt                                             >  2:2928884/1‑93 (MQ=255)

                                             cGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTg                                            <  2:5121522/93‑1 (MQ=255)

                                                tCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGt                                         <  2:2326346/93‑1 (MQ=255)

                                                 cAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTa                                        <  1:3424440/93‑1 (MQ=255)

                                                   gCTCCTTTACGATGTGAATCGTCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTAtt                                      >  1:1526922/1‑92 (MQ=255)

                                                   gCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATg                                      <  1:1335820/93‑1 (MQ=255)

                                                   gCTCCTTAACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATg                                      >  2:5320474/1‑93 (MQ=255)

                                                     tCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGtt                                    <  2:984448/93‑1 (MQ=255)

                                                     tCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGtt                                    >  1:1635266/1‑93 (MQ=255)

                                                        tttACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgag                                 >  1:8268713/1‑93 (MQ=255)

                                                        tttACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgag                                 >  2:6933111/1‑93 (MQ=255)

                                                        tttACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgag                                 >  1:4329280/1‑93 (MQ=255)

                                                        tttACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgag                                 >  1:7639939/1‑93 (MQ=255)

                                                        tttACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgag                                 >  1:2646408/1‑93 (MQ=255)

                                                         ttACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgaga                                <  2:6568017/93‑1 (MQ=255)

                                                          tACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGccc                                                                          <  1:3774958/50‑1 (MQ=255)

                                                          tACGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGaa                               <  1:7204259/93‑1 (MQ=255)

                                                            cGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGc                             <  1:2841259/93‑1 (MQ=255)

                                                            cGATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGc                             <  2:5933728/93‑1 (MQ=255)

                                                             gATGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTAGCGAATCTACCAGGATGCGTATGTTGAGAAGCg                            >  2:4474965/1‑93 (MQ=255)

                                                              aTGTGAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCgg                           >  2:1267254/1‑93 (MQ=255)

                                                                gtgAATCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGaa                         <  1:4015842/93‑1 (MQ=255)

                                                                    agcGGCAAACGAATAGTACGGGCTTAGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCa                     <  2:386877/91‑1 (MQ=255)

                                                                    aTCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCa                     >  2:5467321/1‑93 (MQ=255)

                                                                     tCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCAc                    >  1:616492/1‑93 (MQ=255)

                                                                     tCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCAc                    >  2:5649964/1‑93 (MQ=255)

                                                                     tCGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGATGAGAAGCGGAAACCAc                    >  1:4777823/1‑93 (MQ=255)

                                                                      cGGCAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACAAGGTTGCGTATGTTGAGAAGCGGAAACCACg                   <  1:8363281/93‑1 (MQ=255)

                                                                         cAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTc                <  1:5879394/93‑1 (MQ=255)

                                                                         cAAACGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTc                >  1:192110/1‑93 (MQ=255)

                                                                          aaaCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTcc               <  2:6066180/93‑1 (MQ=255)

                                                                          aaaCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTcc               >  2:3124100/1‑93 (MQ=255)

                                                                          aaaCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTcc               >  2:1036274/1‑93 (MQ=255)

                                                                          aaaCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTcc               <  1:3601870/93‑1 (MQ=255)

                                                                          aaaCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGGTcg               >  2:3511129/1‑92 (MQ=255)

                                                                          aaaCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGGATGTTGAGAAGCGGAACCCACGTTca               >  1:3631405/1‑92 (MQ=255)

                                                                            aCGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCgg             <  2:4094790/93‑1 (MQ=255)

                                                                             cGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCggg            >  2:3345083/1‑93 (MQ=255)

                                                                             cGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCggg            <  2:7660696/93‑1 (MQ=255)

                                                                             cGAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCggg            <  2:5536694/93‑1 (MQ=255)

                                                                              gAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGt           >  2:7096374/1‑93 (MQ=255)

                                                                              gAATAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGt           <  1:552011/93‑1 (MQ=255)

                                                                                 tAGTACGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCaa        >  1:5237281/1‑93 (MQ=255)

                                                                                      cGGGCTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTCCCGGGTCAAACTtc   >  1:6540232/1‑93 (MQ=255)

CATGGTCCAGCTTATGGGACAACTCACGTGCGGTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCT  >  NC_000913/2865001‑2865180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`