BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,494,555	T→C	intergenic (+41/‑85)	nirD → / → nirC	nitrite reductase (NAD(P)H) subunit/Nitrite transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,494,555	0	T	C	100.0%	1102.2 / NA	317	intergenic (+41/‑85)	nirD/nirC	nitrite reductase (NAD(P)H) subunit/Nitrite transporter
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (58/259); total (58/259)

Only 100 of 330 total aligned reads displayed.

AAACATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGTCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTT  >  NC_000913/3494464‑3494644

 aaCATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGccc                                                                                         <  1:3793132/93‑1 (MQ=255)

 aaCATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGccc                                                                                         <  2:4230460/93‑1 (MQ=255)

  aCATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCt                                                                                        <  1:3829975/93‑1 (MQ=255)

  aCATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCt                                                                                        >  1:3222697/1‑93 (MQ=255)

  aCATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCt                                                                                        <  2:1126772/93‑1 (MQ=255)

   cATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTg                                                                                       <  1:1490026/93‑1 (MQ=255)

   cATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTg                                                                                       <  1:7249078/93‑1 (MQ=255)

   cATGACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTg                                                                                       <  2:5378436/93‑1 (MQ=255)

       aCGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGtaat                                                                                   >  2:8133429/1‑93 (MQ=255)

         gAAGCGCGGCTGAAAGACGGCGTGATGCAGCTGCGCGTTTAATGTTTTACCGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGtaataa                                                                                 <  2:3180183/93‑1 (MQ=255)

          aaGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTaataat                                                                                <  1:6778138/93‑1 (MQ=255)

            gcgcGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCt                                                                              <  2:2966643/93‑1 (MQ=255)

            gcgcGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCt                                                                              <  2:4844385/93‑1 (MQ=255)

              gcgAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTc                                                                            <  2:1577704/93‑1 (MQ=255)

              gcgAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTc                                                                            <  2:1456931/93‑1 (MQ=255)

              gcgAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTc                                                                            <  1:6714486/93‑1 (MQ=255)

               cgAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCg                                                                           >  1:8439189/1‑93 (MQ=255)

                 aGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGt                                                                         <  1:4674125/93‑1 (MQ=255)

                  gTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGta                                                                        <  2:701651/93‑1 (MQ=255)

                   tGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGtat                                                                       <  1:8814076/93‑1 (MQ=255)

                    gAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGtata                                                                      <  2:8778658/93‑1 (MQ=255)

                    gAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGtata                                                                      <  1:5732553/93‑1 (MQ=255)

                    gAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGtata                                                                      <  1:4743339/93‑1 (MQ=255)

                      aaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    >  2:1500475/1‑93 (MQ=255)

                      aaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    <  1:4902163/93‑1 (MQ=255)

                      aaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    <  1:5194843/93‑1 (MQ=255)

                      aaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    <  2:6773522/93‑1 (MQ=255)

                      aaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    <  2:6662984/93‑1 (MQ=255)

                      aaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    <  1:560517/93‑1 (MQ=255)

                      aaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    <  1:2000892/93‑1 (MQ=255)

                      aaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    <  1:1654155/93‑1 (MQ=255)

                      aaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    <  1:1751199/93‑1 (MQ=255)

                        gACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGc                                                                  <  1:2430733/93‑1 (MQ=255)

                          cGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAg                                                                <  2:1478015/93‑1 (MQ=255)

                          cGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAg                                                                <  2:5244262/93‑1 (MQ=255)

                           gtcGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAgg                                                               <  1:4404428/91‑1 (MQ=255)

                           ggCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAgg                                                               <  1:8544591/93‑1 (MQ=255)

                              gtggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACa                                                            >  2:2934917/1‑93 (MQ=255)

                               tggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAt                                                           <  2:5821481/93‑1 (MQ=255)

                               tggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAt                                                           <  1:2918771/93‑1 (MQ=255)

                               gggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAt                                                           <  1:3079627/92‑1 (MQ=255)

                                ggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAtt                                                          <  2:8486385/93‑1 (MQ=255)

                                 gtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAttt                                                         <  2:5479626/93‑1 (MQ=255)

                                 gtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAttt                                                         <  1:1018180/93‑1 (MQ=255)

                                 gtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAttt                                                         <  1:8236098/93‑1 (MQ=255)

                                 gtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAttt                                                         >  1:5495287/1‑93 (MQ=255)

                                  tgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAtttt                                                        <  1:4503995/93‑1 (MQ=255)

                                  tgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAtttt                                                        >  1:6522356/1‑93 (MQ=255)

                                  tgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAtttt                                                        <  2:8285/93‑1 (MQ=255)

                                     aGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTa                                                     >  2:210082/1‑93 (MQ=255)

                                     aGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTa                                                     <  2:1720020/93‑1 (MQ=255)

                                     aGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTa                                                     >  2:6141570/1‑93 (MQ=255)

                                       cTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCGTGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTaaa                                                   <  2:5743683/93‑1 (MQ=255)

                                        tGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAAc                                                  <  2:3930086/93‑1 (MQ=255)

                                         gcgcGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACt                                                 <  1:3600615/93‑1 (MQ=255)

                                          cgcgGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGGCATTTTTTAAACtt                                                <  1:5994788/93‑1 (MQ=255)

                                          cgcgGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACtt                                                <  1:7616621/93‑1 (MQ=255)

                                           gcgGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACttt                                               <  2:5654875/93‑1 (MQ=255)

                                           gcgGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACttt                                               <  2:6003071/93‑1 (MQ=255)

                                           ccagTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACttt                                               <  2:8630300/90‑1 (MQ=255)

                                            ggtttAATGTTTTAACGGGAGGCGAAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACtttt                                              <  2:3118967/90‑1 (MQ=255)

                                            cgGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACtttt                                              >  2:2873405/1‑93 (MQ=255)

                                             ggTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACttttt                                             >  2:3747899/1‑93 (MQ=255)

                                              gTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTg                                            >  1:5865618/1‑93 (MQ=255)

                                              gTTAATGTTTTAACGGGAGGCGCAATGCCCCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTg                                            >  1:545778/1‑93 (MQ=255)

                                              gTTAATGTTTTAACGGGAGGCGCAATGCCCCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTg                                            <  2:6045764/93‑1 (MQ=255)

                                               ttAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGt                                           <  1:1772314/93‑1 (MQ=255)

                                                 aaTGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGttt                                         <  1:7506719/93‑1 (MQ=255)

                                                  aTGTTTTAACGGGAGGCTCAATGCCTCACCGTTTTGCATGGCCCGGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGtttt                                        <  1:8637965/93‑1 (MQ=255)

                                                  aTGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGtttt                                        <  2:489853/93‑1 (MQ=255)

                                                   tGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTT‑CATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAt                                      <  2:1963534/93‑1 (MQ=255)

                                                    gTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAt                                      <  2:2661996/93‑1 (MQ=255)

                                                        tAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAttttt                                  <  2:3667710/93‑1 (MQ=255)

                                                         aaCGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAtttttt                                 <  1:1179530/93‑1 (MQ=255)

                                                            gggAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtt                              <  2:4664511/93‑1 (MQ=255)

                                                            gggAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtt                              <  2:4699606/93‑1 (MQ=255)

                                                            gggAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtt                              <  1:6808322/93‑1 (MQ=255)

                                                              gAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtttt                            <  1:7923403/93‑1 (MQ=255)

                                                              gAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtttt                            <  1:3354793/93‑1 (MQ=255)

                                                              gAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtttt                            >  1:1422413/1‑93 (MQ=255)

                                                               aGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGttttt                           <  2:6553353/93‑1 (MQ=255)

                                                               aGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGttttt                           <  1:2864685/93‑1 (MQ=255)

                                                                 gcgcAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGGCATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAt                         <  1:3495474/93‑1 (MQ=255)

                                                                 gcgcAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAt                         <  1:4239487/93‑1 (MQ=255)

                                                                 gcgcAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAt                         <  1:3949308/93‑1 (MQ=255)

                                                                   gcAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAttt                       >  2:3349175/1‑93 (MQ=255)

                                                                    cAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAtttt                      <  1:6381487/93‑1 (MQ=255)

                                                                          cTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAg                >  2:7988091/1‑93 (MQ=255)

                                                                          cTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAg                <  1:7017386/93‑1 (MQ=255)

                                                                           tCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGGCATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAgg               <  2:7544481/93‑1 (MQ=255)

                                                                           tCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAgg               <  2:5044235/93‑1 (MQ=255)

                                                                           tCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAgg               <  2:4432552/93‑1 (MQ=255)

                                                                            ccccTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGa              <  2:7222541/93‑1 (MQ=255)

                                                                            ccccTTTTTGCATGGCCCTGTAATAATCTTAGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGa              <  1:6074391/93‑1 (MQ=255)

                                                                             cccTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGAt             >  1:2627074/1‑93 (MQ=255)

                                                                             cccTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGAt             <  2:2190398/93‑1 (MQ=255)

                                                                                 ttttGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATc         <  1:4315681/93‑1 (MQ=255)

                                                                                  tttGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCa        <  2:5583077/93‑1 (MQ=255)

                                                                                     gCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt     <  1:8167134/93‑1 (MQ=255)

                                                                                        tGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGtt  >  2:7307138/1‑93 (MQ=255)

AAACATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGTCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTT  >  NC_000913/3494464‑3494644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`