BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,881,483	Δ1 bp	intergenic (‑126/‑482)	dnaA ← / → rpmH	DnaA/50S ribosomal subunit protein L34

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,881,483	0	G	.	100.0%	1104.1 / NA	234	intergenic (‑126/‑482)	dnaA/rpmH	DnaA/50S ribosomal subunit protein L34
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (91/143); total (91/143)

Only 100 of 236 total aligned reads displayed.

GGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTT  >  NC_000913/3881395‑3881569

 gCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGa                                                                                  <  2:2821866/93‑1 (MQ=255)

   tGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc                                                                                >  1:1000455/1‑93 (MQ=255)

   tGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc                                                                                <  1:4316925/93‑1 (MQ=255)

   tGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc                                                                                >  2:2051569/1‑93 (MQ=255)

    gAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATcc                                                                               <  1:6208794/93‑1 (MQ=255)

    gAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATcc                                                                               >  2:6010061/1‑93 (MQ=255)

    gAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATcc                                                                               <  2:2448541/93‑1 (MQ=255)

     aaaCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCt                                                                              >  1:6318809/1‑93 (MQ=255)

     aaaCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCt                                                                              <  1:1566462/93‑1 (MQ=255)

      aaCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTg                                                                             >  2:1036225/1‑93 (MQ=255)

       aCATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACGGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGc                                                                            <  1:4057202/93‑1 (MQ=255)

        cATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCa                                                                           >  2:4735598/1‑93 (MQ=255)

        cATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCa                                                                           <  1:815792/93‑1 (MQ=255)

         aTTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaa                                                                          >  1:2765338/1‑93 (MQ=255)

         aTTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGATTATATGCCCGA‑TAAAGATACTGCaa                                                                          >  1:2961911/1‑93 (MQ=255)

            cATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc                                                                       <  1:2225034/93‑1 (MQ=255)

            cATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc                                                                       >  1:4140993/1‑93 (MQ=255)

            cATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc                                                                       <  1:2721460/93‑1 (MQ=255)

              tGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGa                                                                     <  2:5798467/93‑1 (MQ=255)

              tGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGa                                                                     <  1:6442825/93‑1 (MQ=255)

               taTTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt                                                                    <  1:967049/92‑1 (MQ=255)

               gATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt                                                                    <  1:4495626/93‑1 (MQ=255)

                aTTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATc                                                                   <  2:5245431/93‑1 (MQ=255)

                aTTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATc                                                                   <  1:3891925/93‑1 (MQ=255)

                 ttgttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg                                                                  <  1:3707909/93‑1 (MQ=255)

                  tgttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCgg                                                                 <  2:4122500/93‑1 (MQ=255)

                    ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGa                                                               <  1:5133115/93‑1 (MQ=255)

                      gACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGAcc                                                             <  2:4016445/93‑1 (MQ=255)

                      gACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGAcc                                                             >  2:870619/1‑93 (MQ=255)

                        cgtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcgc                                                           >  2:4661140/1‑93 (MQ=255)

                         gtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcgcg                                                          >  1:4714321/1‑93 (MQ=255)

                          tacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCgg                                                         >  1:5319672/1‑93 (MQ=255)

                           acgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGa                                                        >  2:6295086/1‑93 (MQ=255)

                             gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATc                                                      >  2:5533049/1‑93 (MQ=255)

                             gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATc                                                      <  1:2618048/93‑1 (MQ=255)

                               cGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCAt                                                    >  2:544188/1‑93 (MQ=255)

                                gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCTA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa                                                   <  1:1080226/93‑1 (MQ=255)

                                gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa                                                   >  1:2359111/1‑93 (MQ=255)

                                 aaaaGCCCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAg                                                  <  2:1872653/93‑1 (MQ=255)

                                 aaaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAg                                                  >  1:1738904/1‑93 (MQ=255)

                                  aaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGc                                                 >  2:6279734/1‑93 (MQ=255)

                                  aaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGc                                                 >  2:536380/1‑93 (MQ=255)

                                  aaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGc                                                 >  2:1782214/1‑93 (MQ=255)

                                   aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGcc                                                <  1:5589481/93‑1 (MQ=255)

                                   aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGcc                                                >  2:1642035/1‑93 (MQ=255)

                                   aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGcc                                                <  2:257841/93‑1 (MQ=255)

                                   aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGcc                                                <  1:3075286/93‑1 (MQ=255)

                                   aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGcc                                                >  2:1258498/1‑93 (MQ=255)

                                     gACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTa                                              >  2:6473259/1‑93 (MQ=255)

                                     gACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTa                                              >  1:2231003/1‑93 (MQ=255)

                                      aCCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaa                                             <  1:3494291/93‑1 (MQ=255)

                                      aCCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaa                                             <  1:4012667/93‑1 (MQ=255)

                                        ccTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc                                           <  2:1535625/93‑1 (MQ=255)

                                        ccTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc                                           <  1:4412505/93‑1 (MQ=255)

                                         cTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt                                          >  2:5042269/1‑93 (MQ=255)

                                         cTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt                                          <  1:1584311/93‑1 (MQ=255)

                                         cTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt                                          <  1:4867929/93‑1 (MQ=255)

                                          tGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTg                                         >  2:1979485/1‑93 (MQ=255)

                                           gCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgc                                        <  1:2417432/93‑1 (MQ=255)

                                            cTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcg                                       >  2:3548795/1‑93 (MQ=255)

                                               gAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCaa                                    <  1:99623/93‑1 (MQ=255)

                                               gAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCaa                                    >  2:2885481/1‑93 (MQ=255)

                                                aGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAag                                   <  1:1893401/93‑1 (MQ=255)

                                                 gggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAaga                                  <  1:1047308/93‑1 (MQ=255)

                                                  ggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGCATCATAGCCTAAACTGCGCAagag                                 <  1:6225077/93‑1 (MQ=255)

                                                    tGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt                               <  2:750998/93‑1 (MQ=255)

                                                     gACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtc                              <  2:2293627/93‑1 (MQ=255)

                                                     gACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtc                              <  1:383971/93‑1 (MQ=255)

                                                      gcGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct                             <  2:3686271/92‑1 (MQ=255)

                                                      aCGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct                             >  1:5696144/1‑93 (MQ=255)

                                                      aCGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct                             <  1:1704307/93‑1 (MQ=255)

                                                       cGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtctt                            >  2:131233/1‑93 (MQ=255)

                                                        gCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttc                           <  2:3102776/93‑1 (MQ=255)

                                                         cACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct                          <  2:1469560/93‑1 (MQ=255)

                                                            gAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGtt                       <  2:3769145/93‑1 (MQ=255)

                                                              aCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtc                     <  2:3383164/93‑1 (MQ=255)

                                                                cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtctc                   <  1:1303528/93‑1 (MQ=255)

                                                                cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtctc                   <  2:5383728/93‑1 (MQ=255)

                                                                cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtctc                   <  1:5366305/93‑1 (MQ=255)

                                                                cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtctc                   >  1:3538143/1‑93 (MQ=255)

                                                                cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtctc                   <  2:3912625/93‑1 (MQ=255)

                                                                 gCTGTCTGCTGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTca                  <  2:565657/93‑1 (MQ=255)

                                                                 gCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTca                  >  2:3172694/1‑93 (MQ=255)

                                                                  cTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTcac                 <  1:847179/93‑1 (MQ=255)

                                                                   tGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTcaca                <  1:6263634/93‑1 (MQ=255)

                                                                   tGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTcaca                >  2:3573075/1‑93 (MQ=255)

                                                                   tGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTcaca                <  2:5915805/93‑1 (MQ=255)

                                                                   tGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTcaca                <  2:1354362/93‑1 (MQ=255)

                                                                     tCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGa              <  2:4393464/93‑1 (MQ=255)

                                                                       tGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGAtt            <  1:3206400/93‑1 (MQ=255)

                                                                         cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGAtttt          <  2:3503509/93‑1 (MQ=255)

                                                                         cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGAtttt          <  1:4962439/93‑1 (MQ=255)

                                                                           gTTATATGCCCGA‑TCAAGATCCTGCAAAGCGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTcc        <  2:2177414/93‑1 (MQ=255)

                                                                           gTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTcc        >  1:1962425/1‑93 (MQ=255)

                                                                            ttATATGCCGGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTccc       <  1:6097852/93‑1 (MQ=255)

                                                                             tataTGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCg      >  1:5852378/1‑93 (MQ=255)

                                                                              atatGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGa     >  2:5126480/1‑93 (MQ=255)

                                                                               tatGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTGAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGAt    <  2:3432749/93‑1 (MQ=255)

                                                                               tatGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGAt    >  1:5105335/1‑93 (MQ=255)

                                                                                 tGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGAttt  <  1:4891106/93‑1 (MQ=255)

GGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTT  >  NC_000913/3881395‑3881569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`