| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,091 | 1 | . | C | 93.7% | 362.6 / 23.2 | 142 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (1/8); new base C (10/123); total (11/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
| * | NC_000913 | 3,957,091 | 2 | . | C | 93.7% | 363.6 / 23.2 | 142 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (1/8); new base C (10/123); total (11/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 | |||||||||||
Only 100 of 158 total aligned reads displayed.
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957000‑3957173 || tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑c < 2:3286395/93‑1 (MQ=255) gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑GCCCCCCCCCC‑‑A‑‑cccc > 2:5077826/1‑90 (MQ=255) gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑ccgt < 1:3349452/93‑4 (MQ=255) gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑c‑cct < 2:1184061/93‑1 (MQ=255) ggtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑cctctc > 1:858430/1‑91 (MQ=255) ggtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑cctctc < 2:3494109/93‑3 (MQ=255) ggtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑cctctc < 2:610770/93‑3 (MQ=255) ggtagagaAGAAACTGCGCGACTATATGACAGATATGAAACGTATTGCTGTTGCGTGTTAAGTGCGCGCTGATG‑CCCTCGCCCCG‑‑A‑‑C‑cctctc < 2:2820609/93‑3 (MQ=37) taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑cctctccc < 2:5852981/93‑5 (MQ=255) gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCcaca < 2:4117146/93‑1 (MQ=38) gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCcaca < 1:4224652/93‑1 (MQ=38) gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCcaca < 2:3856588/93‑1 (MQ=38) taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAGGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACag < 1:2387100/93‑1 (MQ=37) aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCcacacg > 2:2073569/1‑91 (MQ=37) aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCCCTCCCCC‑‑A‑‑C‑ACCCCcccacccc > 1:386143/1‑89 (MQ=255) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACaggg < 1:2990561/93‑1 (MQ=37) aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggaga < 2:2604224/93‑1 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagag < 2:3153435/93‑1 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagag < 1:1636071/93‑1 (MQ=37) cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagagg < 1:354695/93‑1 (MQ=25) tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagaggg < 1:6093181/93‑1 (MQ=25) tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagaggg < 1:5449868/93‑1 (MQ=25) tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagaggg < 2:4080743/93‑1 (MQ=25) gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCGCCC‑‑C‑TCTCCCACagggagaggga < 1:129307/93‑1 (MQ=25) cgcgGCTATATGACAGATAGGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagagggag < 2:1195481/93‑1 (MQ=25) gctgCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAgggagagggaga < 1:1005045/90‑1 (MQ=21) gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAgggagagggaga < 2:3815556/93‑1 (MQ=25) cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGaa < 2:1727305/93‑1 (MQ=25) ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGaaa < 2:5410557/93‑1 (MQ=25) gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGGGCGCGCTGATGCCCCTGTCACGG‑‑A‑‑CGTCTCCCACCCGGAGAGGGGGaaca > 1:2089165/1‑91 (MQ=255) cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAac > 1:3247110/1‑93 (MQ=21) cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAac < 1:1351145/93‑1 (MQ=21) atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAacac < 1:4174166/93‑1 (MQ=21) tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACt < 2:2831649/93‑1 (MQ=21) tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACt < 1:2623633/93‑1 (MQ=21) atGACAGATATGAAACGTATTGCTGTTGCGGGTTACGTGCGCGCTGATG‑CCCTCGCCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTc < 2:4552696/93‑1 (MQ=21) tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCa < 1:4823172/93‑1 (MQ=21) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCaa < 1:1783949/93‑1 (MQ=21) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCaa < 1:1013524/93‑1 (MQ=21) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCaa < 1:1454246/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑g < 2:622719/93‑1 (MQ=21) cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑gg > 2:3191891/1‑92 (MQ=21) cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑gg < 1:2237195/93‑2 (MQ=21) cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCACG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑gg < 2:4658949/93‑2 (MQ=21) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑ggcc < 2:5481310/93‑4 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑ggcct < 2:1523584/93‑5 (MQ=21) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtc < 1:3153491/93‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtc < 1:3935850/93‑1 (MQ=18) gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtctc < 1:6083213/93‑1 (MQ=18) gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtctc < 2:1923959/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtctca < 1:2069487/93‑2 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTcc < 2:4411706/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTg < 1:5338660/93‑1 (MQ=18) cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTgg < 1:5554151/93‑1 (MQ=18) cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTgg < 2:6374374/93‑1 (MQ=21) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGga < 2:254129/93‑1 (MQ=18) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGga < 1:4455735/93‑1 (MQ=18) aTTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGgaga < 2:2040703/93‑1 (MQ=18) gCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAgg < 1:363040/93‑1 (MQ=18) tGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGcc < 2:1050033/93‑1 (MQ=18) gTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCt < 1:4627217/93‑1 (MQ=18) ttGCGGGTTAAGTGCGCGCTAATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCtt < 2:213704/93‑1 (MQ=18) tGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTg < 2:2910210/93‑1 (MQ=18) tGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTg < 2:3887439/93‑1 (MQ=18) gCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:4099594/93‑1 (MQ=18) cGGGTTAAGTGCGCGCTGATG‑CCCTCCCCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCt < 2:5291380/93‑1 (MQ=18) cGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCt < 2:2130620/93‑1 (MQ=18) cGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCt < 1:1302114/93‑1 (MQ=18) cGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCC‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCt > 2:1003920/1‑93 (MQ=18) gggTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTa < 2:6110777/93‑1 (MQ=18) ggTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 2:3128559/93‑1 (MQ=18) gTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 1:1165686/93‑1 (MQ=18) ttAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:2583127/93‑1 (MQ=18) tAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:6138053/93‑1 (MQ=18) tAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:3732241/93‑1 (MQ=18) aaGTGCGCGCTGATG‑CCCTCGCCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:2692296/93‑1 (MQ=18) aaGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACGCTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:4512314/93‑1 (MQ=18) aGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:5691133/93‑1 (MQ=18) aGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:2604575/93‑1 (MQ=18) gTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 1:3979240/93‑1 (MQ=18) gcgcgcTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:3262793/93‑1 (MQ=21) gcTGATG‑CCGTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:1044885/93‑1 (MQ=21) gcTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:83492/93‑1 (MQ=21) cTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:6451767/93‑1 (MQ=21) tGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 1:1848148/93‑1 (MQ=25) cgATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 2:3119394/92‑1 (MQ=25) gATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:555552/93‑1 (MQ=25) aTG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCa < 2:6324766/93‑1 (MQ=25) tG‑CCCTCACCCCGCCC‑‑C‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 1:3453432/93‑1 (MQ=25) tG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 2:760353/93‑1 (MQ=25) g‑CCCTCACCCCG‑‑ACCC‑TCTACCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc > 2:5520604/1‑93 (MQ=25) cccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:500823/93‑1 (MQ=25) cccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTCCTCCTGGAGAACGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:2821905/93‑1 (MQ=21) ccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:5280271/93‑1 (MQ=25) ccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:5104223/93‑1 (MQ=25) ccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:2698188/93‑1 (MQ=25) tCACCCCG‑‑ACGC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTGGCGGTACAGCACCTTaa < 2:3182267/93‑1 (MQ=37) tCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 1:6225475/1‑93 (MQ=37) tCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACAATCAAGGCCTTCTCCTGGAGAAAGCCTTGCTATTAGTTTCGGTACAGCACCTTaa > 2:5642319/1‑93 (MQ=25) cACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:2853495/93‑1 (MQ=37) || TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957000‑3957173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |