BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,001,717	+C	coding (86/903 nt)	rarD ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,001,717	1	.	C	100.0%	701.2 / NA	208	T29R (ACG→AGG)	rarD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (89/119); total (89/119)

Only 100 of 237 total aligned reads displayed.

TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACG‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATT  >  NC_000913/4001625‑4001803

tGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACg                                                                                         <  2:769867/93‑1 (MQ=255)

 gCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACgc                                                                                        >  2:3719086/1‑92 (MQ=255)

  cTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACgct                                                                                       <  1:2334993/93‑3 (MQ=255)

   tcatcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTTAAGTACgctg                                                                                      >  1:5571483/1‑90 (MQ=255)

   tcatcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGCAGTACgctg                                                                                      >  1:2697908/1‑90 (MQ=255)

   tcatcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAAATTGAAGTACgctg                                                                                      >  1:4502285/1‑90 (MQ=255)

    catcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTTAAGTACgctgg                                                                                     >  1:2244818/1‑89 (MQ=255)

       caGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGgcgc                                                                                  <  1:668225/93‑1 (MQ=255)

           accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCtata                                                                              >  2:1529801/1‑93 (MQ=255)

            ccaccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAc                                                                             <  1:4074664/93‑1 (MQ=255)

             caccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAcc                                                                            >  1:2511515/1‑93 (MQ=255)

             caccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGCAGTAAATCAACTTGAAGTACGCTGGCGCTATAcc                                                                            >  2:3280661/1‑93 (MQ=255)

              accaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAAATTGAAGTACGCTGGCGCTATAccc                                                                           >  1:5315777/1‑93 (MQ=255)

              accaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATAAACTTGAAGTACGCTGGCGCTATAccc                                                                           >  2:1130891/1‑93 (MQ=255)

               ccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAcccc                                                                          <  2:4581840/93‑1 (MQ=255)

                 aTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTTAAGTACGCTTGCGCTATAAACCaa                                                                        >  1:3986185/1‑93 (MQ=255)

                 aTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaa                                                                        <  2:1782113/93‑1 (MQ=255)

                   aaaGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCATGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaat                                                                      <  2:4521770/93‑1 (MQ=255)

                   aaaGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaat                                                                      >  2:4649552/1‑93 (MQ=255)

                    aaGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATTAAATTTAAGGACGCTGGCGCTATACCCCcaata                                                                     >  1:1292443/1‑93 (MQ=255)

                    aaGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaata                                                                     >  1:4227844/1‑93 (MQ=255)

                     aGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataa                                                                    >  1:1852290/1‑93 (MQ=255)

                     aGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataa                                                                    >  2:1238685/1‑93 (MQ=255)

                     aGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataa                                                                    >  2:3637254/1‑93 (MQ=255)

                         aaaaGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataaaata                                                                >  1:4332770/1‑93 (MQ=255)

                         aaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataaaata                                                                >  2:5313152/1‑93 (MQ=255)

                          aaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCCaataaaataa                                                               >  1:1109869/1‑93 (MQ=255)

                            cGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGc                                                             >  2:2760008/1‑93 (MQ=255)

                             gACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTTGCGCTATACCCCAAATAAAATAAGCg                                                            >  2:235718/1‑93 (MQ=255)

                             gACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCg                                                            <  2:2821078/93‑1 (MQ=255)

                             gACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCg                                                            <  2:6202890/93‑1 (MQ=255)

                              aCCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGGAAGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCgg                                                           >  1:2866687/1‑93 (MQ=255)

                              aCCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCgg                                                           >  1:2935924/1‑93 (MQ=255)

                                cAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCggga                                                         >  1:2130998/1‑91 (MQ=255)

                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCaa                                                        <  2:2493796/93‑1 (MQ=255)

                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCaa                                                        <  1:344248/93‑1 (MQ=255)

                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTGAAGTAGGCTGGCGCTATACCCCCAATAAAATAAGAGACaa                                                        >  2:2895775/1‑93 (MQ=255)

                                  gATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAag                                                       >  2:2768634/1‑93 (MQ=255)

                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTTGCGCTATACCCCAAATAAAATAAGCCGCAaga                                                      >  2:6423293/1‑93 (MQ=255)

                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                      >  2:5902706/1‑93 (MQ=255)

                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                      <  2:1318858/93‑1 (MQ=255)

                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                      <  1:3546099/93‑1 (MQ=255)

                                    tCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAagag                                                     >  2:5647640/1‑93 (MQ=255)

                                     cACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGGAagagg                                                    >  1:1664362/1‑92 (MQ=255)

                                     cACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGc                                                    >  2:1085492/1‑93 (MQ=255)

                                     cACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGc                                                    <  1:2801830/93‑1 (MQ=255)

                                       cgcgATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGa                                                  <  2:5695640/93‑1 (MQ=255)

                                       cgcgATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGa                                                  <  1:6086783/93‑1 (MQ=255)

                                        gcgATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAg                                                 <  1:791580/93‑1 (MQ=255)

                                         cgATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGt                                                >  2:1758716/1‑93 (MQ=255)

                                          gATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAgga                                               >  1:5621412/1‑91 (MQ=255)

                                            tGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAt                                             >  2:297208/1‑93 (MQ=255)

                                             gCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATa                                            <  1:6113743/93‑1 (MQ=255)

                                             gCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATa                                            <  1:889215/93‑1 (MQ=255)

                                               gTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTTAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATaag                                          >  1:3811734/1‑91 (MQ=255)

                                               gTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACg                                          >  2:3273268/1‑93 (MQ=255)

                                                  aGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGccc                                       <  2:2063268/93‑1 (MQ=255)

                                                  aGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGccc                                       <  1:4687865/93‑1 (MQ=255)

                                                  aGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGccc                                       <  2:1404864/93‑1 (MQ=255)

                                                   ggATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCt                                      <  2:3391906/93‑1 (MQ=255)

                                                   ggATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCt                                      <  2:3924470/93‑1 (MQ=255)

                                                   ggATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAATAATACGCCCt                                      >  1:573964/1‑93 (MQ=255)

                                                     aTTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGc                                    <  1:107507/93‑1 (MQ=255)

                                                         cATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcgcg                                >  1:841393/1‑93 (MQ=255)

                                                          aTCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATCAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgt                               <  2:6305359/93‑1 (MQ=255)

                                                          aTCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgt                               <  1:5813957/93‑1 (MQ=255)

                                                           tCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtt                              <  1:1582714/93‑1 (MQ=255)

                                                           tCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtt                              >  2:4784692/1‑93 (MQ=255)

                                                           tCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtt                              <  1:5469392/93‑1 (MQ=255)

                                                             ggcggGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttg                            <  1:5136956/93‑1 (MQ=255)

                                                               cggGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgtt                          <  1:706429/93‑1 (MQ=255)

                                                               cggGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgtt                          <  1:1006902/93‑1 (MQ=255)

                                                                gggCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttgttt                         <  2:1294392/93‑1 (MQ=255)

                                                                 ggCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATCCCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGtttt                        <  2:1868041/93‑1 (MQ=255)

                                                                    aCGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca                     <  1:4826529/93‑1 (MQ=255)

                                                                    aCGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca                     >  1:2099285/1‑93 (MQ=255)

                                                                    aCGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca                     >  2:5126704/1‑93 (MQ=255)

                                                                    aCGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca                     >  1:4908919/1‑93 (MQ=255)

                                                                    aCGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca                     >  1:5259007/1‑93 (MQ=255)

                                                                     cGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcat                    >  1:3239725/1‑93 (MQ=255)

                                                                       tagtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatcc                  <  1:241343/93‑1 (MQ=255)

                                                                         gtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat                <  1:1327457/93‑1 (MQ=255)

                                                                         gtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat                >  1:4565536/1‑93 (MQ=255)

                                                                         gtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat                <  2:4194247/93‑1 (MQ=255)

                                                                         gtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat                >  2:1967580/1‑93 (MQ=255)

                                                                          taAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccatc               >  1:1248442/1‑93 (MQ=255)

                                                                          taAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccatc               <  1:62217/93‑1 (MQ=255)

                                                                           aaaTCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCg              <  1:2540025/93‑1 (MQ=255)

                                                                           aaaTCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCg              >  1:1977997/1‑93 (MQ=255)

                                                                             aTCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCggg            <  2:4981296/93‑1 (MQ=255)

                                                                                aaCTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAt         <  2:1435859/93‑1 (MQ=255)

                                                                                aaCTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAt         <  1:239913/93‑1 (MQ=255)

                                                                                aaCTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAt         <  2:6298092/93‑1 (MQ=255)

                                                                                  cTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATAc       >  2:5396568/1‑93 (MQ=255)

                                                                                   ttGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACt      <  1:5303266/93‑1 (MQ=255)

                                                                                    tGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTc     >  1:4645502/1‑93 (MQ=255)

                                                                                     gAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCa    <  2:2583004/93‑1 (MQ=255)

                                                                                     gAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCa    <  2:3128251/93‑1 (MQ=255)

                                                                                     gAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCa    >  1:1909459/1‑93 (MQ=255)

                                                                                       aGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCAtt  >  1:6426501/1‑93 (MQ=255)

TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACG‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATT  >  NC_000913/4001625‑4001803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`