BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,038,386	T→C	L475P (CTG→CCG)	appC →	putative third cytochrome oxidase subunit I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,038,386	0	T	C	100.0%	814.1 / NA	236	L475P (CTG→CCG)	appC	putative third cytochrome oxidase subunit I
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (119/117); total (119/117)

Only 100 of 238 total aligned reads displayed.

AGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGC  >  NC_000913/1038296‑1038475

aGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGa                                                                                         >  1:4996920/1‑93 (MQ=255)

 gTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGAt                                                                                        <  1:2506084/93‑1 (MQ=255)

   ttGGTCGTCAGCCGTGGGCGATACAGGACATCTTGCCGACATACTCAGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCa                                                                                      >  1:4098930/1‑93 (MQ=255)

    tGGGCGGCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCAt                                                                                     <  1:18978/93‑1 (MQ=255)

     ggTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATg                                                                                    <  1:3775510/93‑1 (MQ=255)

     ggTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCATTCTCACCGATCATg                                                                                    >  2:3971798/1‑93 (MQ=255)

       tcgtcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGAt                                                                                  <  2:4904024/93‑1 (MQ=255)

          tcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGt                                                                               >  1:4663018/1‑93 (MQ=255)

          tcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGt                                                                               <  1:4675739/93‑1 (MQ=255)

          tcAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGt                                                                               <  2:4419321/93‑1 (MQ=255)

           cAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTa                                                                              >  1:2450487/1‑93 (MQ=255)

            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             >  2:3081128/1‑93 (MQ=255)

            aGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAg                                                                             <  2:2397953/93‑1 (MQ=255)

             gCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAgg                                                                            <  2:2674197/93‑1 (MQ=255)

             gCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAgg                                                                            <  2:5092822/93‑1 (MQ=255)

               cGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGc                                                                          >  1:2793578/1‑93 (MQ=255)

               cGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGc                                                                          <  2:4808745/93‑1 (MQ=255)

                 tGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCtt                                                                        <  2:5509518/93‑1 (MQ=255)

                 tGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCtt                                                                        >  2:3013781/1‑93 (MQ=255)

                   ggCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTa                                                                      >  2:1733268/1‑93 (MQ=255)

                      gATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTacac                                                                   <  2:4340703/93‑1 (MQ=255)

                      gATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTacac                                                                   >  1:2941935/1‑93 (MQ=255)

                       aTACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAcc                                                                  <  2:3502720/93‑1 (MQ=255)

                        tACAGGACATCTTACCGACATACTCCGCGCATTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 <  1:1954529/93‑1 (MQ=255)

                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 <  2:5251487/93‑1 (MQ=255)

                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 >  1:4530872/1‑93 (MQ=255)

                        tACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACAccc                                                                 >  2:202984/1‑93 (MQ=255)

                         aCAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCt                                                                <  1:1539643/93‑1 (MQ=255)

                         aCAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCt                                                                >  2:2261804/1‑93 (MQ=255)

                          cAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTg                                                               <  2:3223413/93‑1 (MQ=255)

                           aGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGt                                                              <  1:5356526/93‑1 (MQ=255)

                           aGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGt                                                              >  2:2650624/1‑93 (MQ=255)

                           aGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGt                                                              >  2:4130434/1‑93 (MQ=255)

                            ggACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGtt                                                             >  2:712513/1‑93 (MQ=255)

                            ggACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGtt                                                             >  2:2789350/1‑93 (MQ=255)

                            ggACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGtt                                                             <  2:6212805/93‑1 (MQ=255)

                             gACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGGAGGGCTTTACACTCTGTTc                                                            >  1:5902437/1‑93 (MQ=255)

                              aCATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCt                                                           >  1:4865491/1‑93 (MQ=255)

                                aTCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTa                                                         >  2:1460994/1‑93 (MQ=255)

                                 tCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTaa                                                        <  1:4170733/93‑1 (MQ=255)

                                 tCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTaa                                                        >  1:3520801/1‑93 (MQ=255)

                                   ttACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATc                                                      >  1:4398004/1‑93 (MQ=255)

                                    tACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCg                                                     >  2:5857078/1‑93 (MQ=255)

                                     aCCGACATCCTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGc                                                    <  1:158882/93‑1 (MQ=255)

                                     aCCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGc                                                    >  1:6271711/1‑93 (MQ=255)

                                      ccGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGcc                                                   <  2:6289662/93‑1 (MQ=255)

                                        gACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGa                                                 <  2:5794090/93‑1 (MQ=255)

                                            tACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTc                                             >  2:782718/1‑93 (MQ=255)

                                            tACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTc                                             <  2:1322891/93‑1 (MQ=255)

                                            tACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTc                                             >  1:1327360/1‑93 (MQ=255)

                                              cTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTa                                           >  1:907658/1‑93 (MQ=255)

                                              cTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTa                                           <  2:1157564/93‑1 (MQ=255)

                                              cTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGAGCTTTACACCCTGTTCTTAATCGCCGACGTCTa                                           >  1:2084952/1‑93 (MQ=255)

                                               tCCGCGCACTCCGCTTTAAACACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAc                                          >  2:2594601/1‑93 (MQ=255)

                                                ccGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAcc                                         >  2:2314372/1‑93 (MQ=255)

                                                ccGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAcc                                         <  1:1133842/93‑1 (MQ=255)

                                                ccGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAcc                                         <  1:1297012/93‑1 (MQ=255)

                                                ccGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTAcc                                         <  1:5191709/93‑1 (MQ=255)

                                                   cgcACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGa                                      <  2:1995407/93‑1 (MQ=255)

                                                     cACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATg                                    <  1:2413801/93‑1 (MQ=255)

                                                      aCTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGc                                   <  1:2853493/93‑1 (MQ=255)

                                                       cTCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCa                                  >  2:1423408/1‑93 (MQ=255)

                                                        tCCGCTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAg                                 >  1:4793590/1‑93 (MQ=255)

                                                            cTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAat                             >  2:1794795/1‑93 (MQ=255)

                                                            cTTTAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAat                             <  1:2148908/93‑1 (MQ=255)

                                                             tttAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAATTCTACCTGATGCAGAAata                            <  1:6287376/93‑1 (MQ=255)

                                                              ttAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAatat                           <  1:3355873/93‑1 (MQ=255)

                                                              ttAACCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAatat                           >  1:651307/1‑93 (MQ=255)

                                                                aaCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGc                         <  1:548588/93‑1 (MQ=255)

                                                                aaCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGc                         >  1:4451424/1‑93 (MQ=255)

                                                                 aCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGcc                        >  1:1045433/1‑93 (MQ=255)

                                                                 aCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGcc                        <  2:3527083/93‑1 (MQ=255)

                                                                 aCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGcc                        >  2:5188963/1‑93 (MQ=255)

                                                                 aCCACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGcc                        <  1:726110/93‑1 (MQ=255)

                                                                  ccACAGGACAACTGGCTTTCTCACCGATCATGCTCGTAGGGCTTTACACCCTGTTCTTAATCGCCCAAGACTCGCTGATGCAGAAATATGccc                       >  1:5691416/1‑93 (MQ=255)

                                                                  ccACAGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGccc                       <  1:2099780/93‑1 (MQ=255)

                                                                   cacaGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCg                      >  2:5654944/1‑93 (MQ=255)

                                                                      aGGACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCt                   <  2:539785/93‑1 (MQ=255)

                                                                        gACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgg                 <  1:2276827/93‑1 (MQ=255)

                                                                        gACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgg                 >  1:3285887/1‑93 (MQ=255)

                                                                        gACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgg                 <  1:2580902/93‑1 (MQ=255)

                                                                        gACAACTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTgg                 <  2:1370764/93‑1 (MQ=255)

                                                                           aaCTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGc              >  2:6394744/1‑93 (MQ=255)

                                                                            aCTGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGcc             >  1:5530500/1‑93 (MQ=255)

                                                                              tGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGa           <  1:3117212/93‑1 (MQ=255)

                                                                              tGGCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGa           >  1:4959362/1‑93 (MQ=255)

                                                                               ggCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAg          <  1:2740039/93‑1 (MQ=255)

                                                                                gCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgc         <  2:3723184/93‑1 (MQ=255)

                                                                                gCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgc         >  2:3096852/1‑93 (MQ=255)

                                                                                gCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgc         <  1:1151611/93‑1 (MQ=255)

                                                                                gCTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgc         <  1:1218944/93‑1 (MQ=255)

                                                                                 cTTTCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgcg        <  1:618628/93‑1 (MQ=255)

                                                                                  tttCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgcgc       <  1:3970397/93‑1 (MQ=255)

                                                                                  tttCTCACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAgcgc       >  2:1231596/1‑93 (MQ=255)

                                                                                     ctcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGAt    <  1:5801324/93‑1 (MQ=255)

                                                                                     ctcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGAt    <  1:1691363/93‑1 (MQ=255)

                                                                                      tcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATg   >  1:5753698/1‑93 (MQ=255)

                                                                                      tcACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATg   >  2:3799680/1‑93 (MQ=255)

                                                                                       cACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGc  <  1:1820751/93‑1 (MQ=255)

                                                                                       cACCGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGc  <  1:799154/93‑1 (MQ=255)

AGTTTGGTCGTCAGCCGTGGGCGATACAGGACATCTTACCGACATACTCCGCGCACTCCGCTTTAACCACAGGACAACTGGCTTTCTCACTGATCATGATCGTAGGGCTTTACACCCTGTTCTTAATCGCCGAAGTCTACCTGATGCAGAAATATGCCCGTCTGGGGCCGAGCGCGATGC  >  NC_000913/1038296‑1038475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`