BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,086,330	T→C	Y247C (TAC→TGC)	ycdQ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,086,330	0	T	C	100.0%	763.8 / NA	220	Y247C (TAC→TGC)	ycdQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (110/110); total (110/110)

Only 100 of 225 total aligned reads displayed.

AGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTG  >  NC_000913/1086240‑1086419

 gTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAc                                                                                        >  2:5091095/1‑93 (MQ=255)

   gCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATTGTCACTGCAGCAAccc                                                                                      >  2:2890846/1‑93 (MQ=255)

   gCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAccc                                                                                      <  1:87664/93‑1 (MQ=255)

   gCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAAccc                                                                                      <  2:63779/93‑1 (MQ=255)

     ccGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCAc                                                                                    <  2:176206/93‑1 (MQ=255)

      cGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACt                                                                                   <  1:1254931/93‑1 (MQ=255)

      cGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACt                                                                                   <  2:6007671/93‑1 (MQ=255)

         ggCTCGTAAAAAATCGTCCGCTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCt                                                                                <  2:5391112/93‑1 (MQ=255)

           cTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGc                                                                              >  1:416484/1‑93 (MQ=255)

            tCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGcc                                                                             <  2:5838485/93‑1 (MQ=255)

            tCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGcc                                                                             <  2:5931998/93‑1 (MQ=255)

            tCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGcc                                                                             >  1:2279284/1‑93 (MQ=255)

             cggaaaaaaTCTTTCACTGATTCAACTTCAGCTTCCAGCTAATATCAATAGCTTCGGTGATCATATCGTCTCTCCAGCAACCCACTTCGGCCa                                                                            <  1:1898110/90‑1 (MQ=255)

              gTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAg                                                                           >  2:73929/1‑93 (MQ=255)

              gTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAg                                                                           <  2:3663502/93‑1 (MQ=255)

              gTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAg                                                                           <  1:3634534/93‑1 (MQ=255)

                 aaaaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgc                                                                        >  2:117869/1‑93 (MQ=255)

                  aaaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcg                                                                       <  1:780826/93‑1 (MQ=255)

                   aaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcgc                                                                      <  1:4635841/93‑1 (MQ=255)

                   aaaTCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGgcgc                                                                      >  2:6082234/1‑93 (MQ=255)

                      tCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGc                                                                   >  1:2844772/1‑93 (MQ=255)

                      tCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGc                                                                   <  2:4955263/93‑1 (MQ=255)

                        gTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGCGCGCTGcga                                                                 >  2:6149418/1‑93 (MQ=255)

                          ccACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcgacg                                                               >  1:5767835/1‑93 (MQ=255)

                           cACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcgacga                                                              >  1:214818/1‑93 (MQ=255)

                           cACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGcgacga                                                              >  1:3979455/1‑93 (MQ=255)

                              tGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAAt                                                           <  2:4684159/93‑1 (MQ=255)

                               gATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATg                                                          >  1:1514838/1‑93 (MQ=255)

                                aTTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGc                                                         <  2:243373/93‑1 (MQ=255)

                                aTTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGc                                                         <  2:5533711/93‑1 (MQ=255)

                                   cAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGc                                                      <  2:674268/93‑1 (MQ=255)

                                         cAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAac                                                <  2:3351392/93‑1 (MQ=255)

                                          aGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAaca                                               >  1:1373064/1‑93 (MQ=255)

                                          aGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAaca                                               >  1:2662387/1‑93 (MQ=255)

                                           gCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAacac                                              <  1:299021/93‑1 (MQ=255)

                                            cTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACAcc                                             <  1:1182580/93‑1 (MQ=255)

                                             ttCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCg                                            >  1:975465/1‑93 (MQ=255)

                                             ttCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCg                                            <  2:275398/93‑1 (MQ=255)

                                              tCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCgg                                           >  1:3619153/1‑93 (MQ=255)

                                               ccAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGa                                          >  1:3138026/1‑93 (MQ=255)

                                               ccAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGa                                          >  1:3191202/1‑93 (MQ=255)

                                                cAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGaa                                         <  1:4441995/93‑1 (MQ=255)

                                                 aGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGaaa                                        >  1:4998836/1‑93 (MQ=255)

                                                  gCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAAc                                       >  2:5752434/1‑93 (MQ=255)

                                                  gCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAAc                                       <  2:1439298/93‑1 (MQ=255)

                                                   cTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACg                                      >  2:156263/1‑93 (MQ=255)

                                                     aatatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACgga                                    >  2:4398609/1‑92 (MQ=255)

                                                     aatatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGt                                    <  1:3668629/93‑1 (MQ=255)

                                                     aatatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGt                                    <  2:109557/93‑1 (MQ=255)

                                                      atatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTa                                   >  1:3361238/1‑93 (MQ=255)

                                                       tatcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTaa                                  >  2:3617959/1‑93 (MQ=255)

                                                        atcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGTCAATAACACCGGAAACGGTaaa                                 <  1:3175122/93‑1 (MQ=255)

                                                        atcaatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTaaa                                 >  1:3554142/1‑93 (MQ=255)

                                                          caatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATa                               <  1:4833513/93‑1 (MQ=255)

                                                          caatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATa                               <  1:1477584/93‑1 (MQ=255)

                                                           aatatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATAc                              >  1:4486416/1‑93 (MQ=255)

                                                            atatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACg                             >  1:1332295/1‑93 (MQ=255)

                                                            atatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACg                             >  2:4774286/1‑93 (MQ=255)

                                                            atatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACg                             >  1:5055866/1‑93 (MQ=255)

                                                             tatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGt                            >  1:5461405/1‑93 (MQ=255)

                                                             tatcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGt                            >  1:6434538/1‑93 (MQ=255)

                                                              atcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGtt                           >  2:1328064/1‑93 (MQ=255)

                                                              atcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGtt                           <  1:6190191/93‑1 (MQ=255)

                                                               tcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGttt                          >  1:2590800/1‑93 (MQ=255)

                                                               tcTTCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGttt                          >  1:3428779/1‑93 (MQ=255)

                                                                 ttCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTcc                        <  2:4410711/93‑1 (MQ=255)

                                                                 ttCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTcc                        >  1:4876325/1‑93 (MQ=255)

                                                                  tCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCa                       <  1:6056868/93‑1 (MQ=255)

                                                                  tCGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCa                       >  2:3774871/1‑93 (MQ=255)

                                                                   cGGTGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCAt                      <  2:251516/93‑1 (MQ=255)

                                                                      tGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGa                   >  2:2111187/1‑93 (MQ=255)

                                                                      tGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGa                   >  2:3460193/1‑93 (MQ=255)

                                                                      tGATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGa                   <  2:5370731/93‑1 (MQ=255)

                                                                       gATCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGAt                  <  1:1605150/93‑1 (MQ=255)

                                                                        aTCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATa                 <  1:4552824/93‑1 (MQ=255)

                                                                        aTCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATa                 >  2:4338156/1‑93 (MQ=255)

                                                                        aTCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATa                 <  2:1794682/93‑1 (MQ=255)

                                                                         tCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAc                >  1:626914/1‑93 (MQ=255)

                                                                         tCATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATAc                >  2:4744512/1‑93 (MQ=255)

                                                                          cATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACg               <  2:891488/93‑1 (MQ=255)

                                                                          cATATCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACg               <  2:1925851/93‑1 (MQ=255)

                                                                           atatCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGc              >  2:3506713/1‑93 (MQ=255)

                                                                           atatCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGc              <  1:5731705/93‑1 (MQ=255)

                                                                            tatCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCt             <  2:6442967/93‑1 (MQ=255)

                                                                            tatCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCt             >  1:3236561/1‑93 (MQ=255)

                                                                             atCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTg            <  2:3917753/93‑1 (MQ=255)

                                                                             atCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTg            >  1:4708985/1‑93 (MQ=255)

                                                                              tCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTgg           >  1:5399252/1‑93 (MQ=255)

                                                                              tCGTCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTgg           >  1:111734/1‑93 (MQ=255)

                                                                               cGTCACTCCAGCAACCCCCTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTggg          <  1:4291844/93‑1 (MQ=255)

                                                                                 tCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGtt        <  1:6160209/93‑1 (MQ=255)

                                                                                 tCACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGtt        >  2:4870461/1‑93 (MQ=255)

                                                                                  cACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTc       >  2:4609285/1‑93 (MQ=255)

                                                                                  cACTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTc       <  1:1078694/93‑1 (MQ=255)

                                                                                    cTCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGc     >  1:1781252/1‑93 (MQ=255)

                                                                                     tCCAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCt    >  2:3275031/1‑93 (MQ=255)

                                                                                      ccAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGTCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCtt   <  2:1306344/93‑1 (MQ=255)

                                                                                      ccAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGGAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCtt   >  2:2281754/1‑93 (MQ=255)

                                                                                      ccAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCtt   >  2:2835789/1‑93 (MQ=255)

                                                                                       cAGCAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTg  <  1:3523452/93‑1 (MQ=255)

AGTGCCCGTGGCTCGTAAAAAATCGTCCACTGATTCAACTGCAGCTTCCAGCTAATATCAATATCTTCGGTGATCATATCGTCACTCCAGTAACCCACTTCTGCCAGGGCGCTGCGACGAAATGCGGCAATAACACCGGAAACGGTAAATACGTTTCCATAGATACGCTGGGTTCGCTTG  >  NC_000913/1086240‑1086419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`