BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,154,920	C→T	P192S (CCG→TCG)	tmk →	thymidylate kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,154,920	0	C	T	100.0%	743.7 / NA	193	P192S (CCG→TCG)	tmk	thymidylate kinase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (99/94); total (99/94)

Only 100 of 200 total aligned reads displayed.

GAATCTTTCGATTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGCCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACGAC  >  NC_000913/1154830‑1155009

gAATCTTTCGATTTCTTTAATCGCACGCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCg                                                                                         >  1:1157445/1‑93 (MQ=255)

   tCTTTCGATTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTg                                                                                      >  2:5948983/1‑93 (MQ=255)

     tttCGATTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGa                                                                                    <  1:5820180/93‑1 (MQ=255)

     tttCGATTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGa                                                                                    >  2:3987748/1‑93 (MQ=255)

      ttCGATTTCTTTAATCGCGCCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAg                                                                                   <  2:421680/93‑1 (MQ=255)

      ttCGATTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAg                                                                                   <  2:2148414/93‑1 (MQ=255)

      ttCGATTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAg                                                                                   <  1:4442134/93‑1 (MQ=255)

       tCGATTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAgg                                                                                  >  1:949022/1‑93 (MQ=255)

         gATTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGcc                                                                                >  1:3295324/1‑93 (MQ=255)

          aTTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCg                                                                               <  2:4497701/93‑1 (MQ=255)

          aTTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCg                                                                               >  1:674953/1‑93 (MQ=255)

          aTTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCg                                                                               >  1:2439737/1‑93 (MQ=255)

          aTTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCg                                                                               >  1:354314/1‑93 (MQ=255)

           tttCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGt                                                                              <  1:2111420/93‑1 (MQ=255)

           tttCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGt                                                                              >  1:1139270/1‑93 (MQ=255)

             tCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTga                                                                            <  2:752850/93‑1 (MQ=255)

                 tAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTgatgga                                                                        <  2:15189/93‑1 (MQ=255)

                    tCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGc                                                                     <  2:1150170/93‑1 (MQ=255)

                      gCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCaa                                                                   >  1:2252395/1‑93 (MQ=255)

                       cACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAAt                                                                  <  2:620749/93‑1 (MQ=255)

                       cACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAAt                                                                  >  2:5243581/1‑93 (MQ=255)

                        aCCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATc                                                                 >  2:4977346/1‑93 (MQ=255)

                         cccGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATcc                                                                <  1:5233214/93‑1 (MQ=255)

                           cgcgCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGc                                                              >  2:4886150/1‑93 (MQ=255)

                             cgcCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCAc                                                            <  1:3960864/93‑1 (MQ=255)

                              gcCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACt                                                           <  2:5132285/93‑1 (MQ=255)

                               cccGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTa                                                          <  2:4244696/93‑1 (MQ=255)

                                ccGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTAc                                                         <  2:5999749/93‑1 (MQ=255)

                                ccGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTAc                                                         >  2:6389249/1‑93 (MQ=255)

                                 cGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTAcc                                                        >  2:1394345/1‑93 (MQ=255)

                                  gCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCg                                                       >  1:1579833/1‑93 (MQ=255)

                                    tATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTg                                                     <  2:3249756/93‑1 (MQ=255)

                                     aTCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGa                                                    >  2:5001934/1‑93 (MQ=255)

                                         ggAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCa                                                >  1:6138515/1‑93 (MQ=255)

                                          gAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGAccccc                                               <  1:2095919/93‑3 (MQ=255)

                                          gAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCAc                                               >  1:704133/1‑93 (MQ=255)

                                          gAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCAc                                               <  1:4791207/93‑1 (MQ=255)

                                          gAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCAc                                               <  2:5319607/93‑1 (MQ=255)

                                           aaCTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACt                                              <  2:1548826/93‑1 (MQ=255)

                                           aaCTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACt                                              >  2:2851455/1‑93 (MQ=255)

                                           aaCTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACt                                              >  2:1962968/1‑93 (MQ=255)

                                            aCTGGCAGCTCAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTg                                             <  1:879789/93‑1 (MQ=255)

                                            aCTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTg                                             <  2:3140090/93‑1 (MQ=255)

                                             cTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTgg                                            >  1:4206755/1‑93 (MQ=255)

                                               ggCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGt                                          <  1:5206938/93‑1 (MQ=255)

                                                gcagcaCAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTg                                         <  1:5420862/93‑1 (MQ=255)

                                                 cagcaCAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGa                                        <  2:5019918/93‑1 (MQ=255)

                                                  agcaCAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGaa                                       <  1:2851455/93‑1 (MQ=255)

                                                  agcaCAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGaa                                       <  2:2340175/93‑1 (MQ=255)

                                                  agcaCAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGaa                                       <  1:4432721/93‑1 (MQ=255)

                                                   gcaCAAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAg                                      >  1:4784714/1‑93 (MQ=255)

                                                     acaAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGa                                    >  2:2386194/1‑93 (MQ=255)

                                                     acaAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGa                                    >  2:4775075/1‑93 (MQ=255)

                                                     acaAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGa                                    <  1:5374938/93‑1 (MQ=255)

                                                     acaAGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGa                                    >  2:5688618/1‑93 (MQ=255)

                                                     acaAGATAAAAGCATTCATACCATGGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGa                                    <  1:1385161/93‑1 (MQ=255)

                                                       aaGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGt                                  <  1:6458375/93‑1 (MQ=255)

                                                       aaGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCCCACTACCGTGACCCACTGGGTGAAGGAGt                                  <  2:725480/93‑1 (MQ=255)

                                                        aGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGtt                                 <  1:781997/93‑1 (MQ=255)

                                                        aGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGtt                                 <  1:3490657/93‑1 (MQ=255)

                                                        aGATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGtt                                 >  2:5565151/1‑93 (MQ=255)

                                                         gATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTg                                <  1:391539/93‑1 (MQ=255)

                                                         gATAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTg                                >  2:5781382/1‑93 (MQ=255)

                                                           tAAAAGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGa                              <  1:2277046/93‑1 (MQ=255)

                                                            aaaaGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGAc                             >  2:3628021/1‑93 (MQ=255)

                                                            aaaaGCATTCATACCATTGATGACACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGAc                             >  1:1824406/1‑93 (MQ=255)

                                                              aaGCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGc                           <  2:1026714/93‑1 (MQ=255)

                                                                gCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCAt                         <  2:3828311/93‑1 (MQ=255)

                                                                gCATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCAt                         <  2:5162717/93‑1 (MQ=255)

                                                                 cATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATg                        <  1:4679698/93‑1 (MQ=255)

                                                                 cATTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACGACCGTGACCCACTGGGTGAAGGAGTTGGACGCATg                        <  1:5833346/93‑1 (MQ=255)

                                                                  aTTCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATga                       >  2:3578903/1‑93 (MQ=255)

                                                                    tCATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATgaca                     <  1:4052413/93‑3 (MQ=255)

                                                                     cATACCATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGAt                    <  1:5868249/93‑1 (MQ=255)

                                                                         ccATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTa                <  2:1764353/93‑1 (MQ=255)

                                                                         ccATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTa                <  1:3649683/93‑1 (MQ=255)

                                                                         ccATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTa                >  1:6122035/1‑93 (MQ=255)

                                                                          cATTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTAt               <  2:4357117/93‑1 (MQ=255)

                                                                           aTTGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATc              >  1:4295615/1‑93 (MQ=255)

                                                                            ttGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATcc             >  2:544262/1‑93 (MQ=255)

                                                                             tGATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCa            >  2:6037774/1‑93 (MQ=255)

                                                                              gATGCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCAt           <  2:2526849/93‑1 (MQ=255)

                                                                                 gCCACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGt        <  1:1689013/93‑1 (MQ=255)

                                                                                 gCCACCAAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGt        <  1:5519818/93‑1 (MQ=255)

                                                                                   cACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTa      <  1:1109531/93‑1 (MQ=255)

                                                                                   cACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTa      <  2:1822159/93‑1 (MQ=255)

                                                                                   cACCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTa      <  1:3218682/93‑1 (MQ=255)

                                                                                    aCCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTAc     >  2:4422095/1‑93 (MQ=255)

                                                                                    aCCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTAc     >  2:3430259/1‑93 (MQ=255)

                                                                                    aCCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTAc     >  1:5479643/1‑93 (MQ=255)

                                                                                    aCCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTAc     <  1:4357227/93‑1 (MQ=255)

                                                                                    aCCCAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTAc     >  2:973843/1‑93 (MQ=255)

                                                                                     cccAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACg    >  2:4323649/1‑93 (MQ=255)

                                                                                     cccAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACg    >  2:3551196/1‑93 (MQ=255)

                                                                                     cccAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACg    <  1:5699851/93‑1 (MQ=255)

                                                                                      ccAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACGa   >  2:2287979/1‑93 (MQ=255)

                                                                                      ccAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACGa   >  2:1129251/1‑93 (MQ=255)

                                                                                       cAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACGAc  >  1:970240/1‑93 (MQ=255)

                                                                                       cAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACGAc  >  1:4919592/1‑93 (MQ=255)

                                                                                       cAGTCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACGAc  >  1:1027136/1‑93 (MQ=255)

GAATCTTTCGATTTCTTTAATCGCACCCGCGCCCGCTATCTGGAACTGGCAGCACAAGATAAAAGCATTCATACCATTGATGCCACCCAGCCGCTGGAGGCCGTGATGGATGCAATCCGCACTACCGTGACCCACTGGGTGAAGGAGTTGGACGCATGAGATGGTATCCATGGTTACGAC  >  NC_000913/1154830‑1155009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`