BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	11,729	T→C	T20A (ACG→GCG)	yaaI ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	11,729	0	T	C	100.0%	676.5 / NA	194	T20A (ACG→GCG)	yaaI	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (84/110); total (84/110)

Only 100 of 198 total aligned reads displayed.

GACAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAGGGGGA  >  NC_000913/11639‑11818

gACAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCgcgc                                                                                         <  1:6319068/93‑1 (MQ=255)

 aCAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCgca                                                                                        >  2:1664595/1‑93 (MQ=255)

  cAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCgcag                                                                                       >  1:5461199/1‑93 (MQ=255)

  cAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCgcag                                                                                       >  2:5844352/1‑93 (MQ=255)

  cAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCgcag                                                                                       >  2:2856212/1‑93 (MQ=255)

    aaCAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCgcagca                                                                                     >  2:2387807/1‑93 (MQ=255)

     aCAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGcagcac                                                                                    >  1:1759924/1‑93 (MQ=255)

     aCAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGcagcac                                                                                    >  1:222188/1‑93 (MQ=255)

     aCAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATCGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGcagcac                                                                                    >  2:1838890/1‑93 (MQ=255)

       aGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGcagcacag                                                                                  >  1:1409567/1‑93 (MQ=255)

        ggAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGcagcacagc                                                                                 >  1:4663629/1‑93 (MQ=255)

        ggAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGcagcacagc                                                                                 >  1:680998/1‑93 (MQ=255)

         gAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGcagcacagca                                                                                >  2:1046342/1‑93 (MQ=255)

           aGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATc                                                                              <  2:3921416/93‑1 (MQ=255)

           aGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATc                                                                              >  1:3464470/1‑93 (MQ=255)

            gTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCa                                                                             >  2:1085367/1‑93 (MQ=255)

             tttCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAg                                                                            <  1:851546/93‑1 (MQ=255)

               tCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGc                                                                          <  2:5626170/93‑1 (MQ=255)

               tCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGc                                                                          >  1:5634148/1‑93 (MQ=255)

                cAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGca                                                                         >  1:5357249/1‑92 (MQ=255)

                  gcgcCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTaa                                                                       >  2:911073/1‑93 (MQ=255)

                  gcgcCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTAAGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTaa                                                                       <  1:29293/93‑1 (MQ=255)

                   cgcCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAAt                                                                      <  1:1996293/93‑1 (MQ=255)

                   cgcCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAAt                                                                      <  2:6144272/93‑1 (MQ=255)

                     ctaGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCg                                                                    >  2:937659/3‑93 (MQ=255)

                      cAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGc                                                                   <  1:4084566/93‑1 (MQ=255)

                       aGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGcc                                                                  >  1:4874916/1‑93 (MQ=255)

                        gATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCa                                                                 >  1:2324546/1‑93 (MQ=255)

                            gTTGGTTTCGTTACGCGGCATTGCAATGGTGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCt                                                             >  2:5071413/1‑93 (MQ=255)

                            gTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCt                                                             <  1:2753245/93‑1 (MQ=255)

                            gTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCt                                                             <  2:6114002/93‑1 (MQ=255)

                            gTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCt                                                             <  2:481374/93‑1 (MQ=255)

                              tGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTgg                                                           <  1:2589863/93‑1 (MQ=255)

                               ggTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGc                                                          <  2:4230877/93‑1 (MQ=255)

                               ggTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGc                                                          <  1:764177/93‑1 (MQ=255)

                               ggTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGc                                                          >  2:3147675/1‑93 (MQ=255)

                               ggTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGc                                                          <  2:81273/93‑1 (MQ=255)

                                 tttCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCgg                                                        >  1:390472/1‑93 (MQ=255)

                                   tCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGaa                                                      >  1:4821912/1‑93 (MQ=255)

                                     gTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAAt                                                    <  2:4345770/93‑1 (MQ=255)

                                     gTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAAt                                                    <  1:2131061/93‑1 (MQ=255)

                                     gTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAAt                                                    >  2:2137427/1‑93 (MQ=255)

                                         cgcgGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTa                                                >  2:5984027/1‑93 (MQ=255)

                                           cgGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTaaa                                              <  1:3160192/93‑1 (MQ=255)

                                            ggCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTaaaa                                             >  2:2864621/1‑93 (MQ=255)

                                             gCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTaaaaa                                            >  1:898458/1‑93 (MQ=255)

                                              cATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAAc                                           <  1:1187082/93‑1 (MQ=255)

                                               aTTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACg                                          >  1:1778681/1‑93 (MQ=255)

                                               aTTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACg                                          <  2:5319926/93‑1 (MQ=255)

                                                ttGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACgg                                         >  1:5532057/1‑93 (MQ=255)

                                                  gCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGAt                                       >  1:6409503/1‑93 (MQ=255)

                                                    aaTGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGAttt                                     <  2:2538121/93‑1 (MQ=255)

                                                     aTGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTc                                    >  1:427567/1‑93 (MQ=255)

                                                     aTGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTc                                    >  2:4680023/1‑93 (MQ=255)

                                                     aTGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTc                                    <  1:4919555/93‑1 (MQ=255)

                                                        gcgcCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATa                                 >  2:5155754/1‑93 (MQ=255)

                                                        gcgcCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATa                                 >  1:2531900/1‑93 (MQ=255)

                                                        gcgcCGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATa                                 >  1:4047798/1‑93 (MQ=255)

                                                           ccGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGCAAAAACGGATTTCATAAgg                              >  2:4056927/1‑93 (MQ=255)

                                                            cGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGa                             <  1:4335864/93‑1 (MQ=255)

                                                            cGAGGAGTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGa                             <  1:4830834/93‑1 (MQ=255)

                                                             gaggagTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGAt                            <  1:5274713/93‑1 (MQ=255)

                                                             gaggagTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGAt                            <  1:5468903/93‑1 (MQ=255)

                                                             gaggagTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGAt                            <  1:62538/93‑1 (MQ=255)

                                                             gaggagTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGAt                            <  2:2997092/93‑1 (MQ=255)

                                                              aggagTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGAtt                           >  2:5441285/1‑93 (MQ=255)

                                                               ggagTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATtc                          <  1:5424482/93‑1 (MQ=255)

                                                                gagTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATtct                         >  1:4427187/1‑93 (MQ=255)

                                                                 agTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATtctc                        >  2:5497981/1‑93 (MQ=255)

                                                                 agTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATtctc                        >  1:5202902/1‑93 (MQ=255)

                                                                 aatttATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATtctc                        <  2:3148859/91‑1 (MQ=255)

                                                                  gTTTATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTctct                       >  1:1863532/1‑93 (MQ=255)

                                                                   tttATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCtt                      >  1:4981304/1‑93 (MQ=255)

                                                                   tttATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCtt                      <  1:5037358/93‑1 (MQ=255)

                                                                   tttATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCtt                      >  2:4747633/1‑93 (MQ=255)

                                                                    ttATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTa                     <  1:5515129/93‑1 (MQ=255)

                                                                     tATGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAg                    <  2:1153784/93‑1 (MQ=255)

                                                                      aTGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGt                   <  2:6353729/93‑1 (MQ=255)

                                                                      aTGGTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGt                   <  1:3212591/93‑1 (MQ=255)

                                                                        ggTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTgg                 <  2:2396589/93‑1 (MQ=255)

                                                                        ggTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTgg                 >  2:6214593/1‑93 (MQ=255)

                                                                         gTCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTggg                <  2:1939090/93‑1 (MQ=255)

                                                                          tCGTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGa               <  2:2703355/93‑1 (MQ=255)

                                                                            gTTTGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAag             <  2:1964177/93‑1 (MQ=255)

                                                                             tttGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAaga            <  2:791462/93‑1 (MQ=255)

                                                                              ttGCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAagag           <  1:5968502/93‑1 (MQ=255)

                                                                                gCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGt         <  1:1283368/93‑1 (MQ=255)

                                                                                gCCTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGt         <  1:3301998/93‑1 (MQ=255)

                                                                                 ccTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTa        <  1:4013632/93‑1 (MQ=255)

                                                                                 ccTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTa        >  2:3211810/1‑93 (MQ=255)

                                                                                 ccTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTa        <  1:1160416/93‑1 (MQ=255)

                                                                                 ccTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGACTTCATAAGGATTCTCTTAGTGGGAAGAGGTa        <  1:3808649/93‑1 (MQ=255)

                                                                                  cTGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAg       >  2:3717158/1‑93 (MQ=255)

                                                                                   tGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAgg      <  1:377373/93‑1 (MQ=255)

                                                                                   tGCGCCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAgg      <  2:1507325/93‑1 (MQ=255)

                                                                                    gcgcCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAggg     <  2:27838/93‑1 (MQ=255)

                                                                                      gcCGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAggggg   <  1:5752771/93‑1 (MQ=255)

                                                                                       ccGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAGGGGGa  <  2:4997736/93‑1 (MQ=255)

                                                                                       ccGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAGGGGGa  <  2:281062/93‑1 (MQ=255)

                                                                                       ccGCGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAGGGGGa  <  1:3722787/93‑1 (MQ=255)

GACAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGATTCTCTTAGTGGGAAGAGGTAGGGGGA  >  NC_000913/11639‑11818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`