BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,494,555	T→C	intergenic (+41/‑85)	nirD → / → nirC	nitrite reductase (NAD(P)H) subunit/Nitrite transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,494,555	0	T	C	100.0%	776.1 / NA	222	intergenic (+41/‑85)	nirD/nirC	nitrite reductase (NAD(P)H) subunit/Nitrite transporter
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (43/179); total (43/179)

Only 100 of 227 total aligned reads displayed.

AACATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGTCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTT  >  NC_000913/3494465‑3494644

aaCATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGccc                                                                                         <  1:5147330/93‑1 (MQ=255)

 aCATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCt                                                                                        <  2:5537290/93‑1 (MQ=255)

 aCATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCACAATGCCTCCCCTTTTTGCATGGCCCt                                                                                        >  1:1008026/1‑93 (MQ=255)

  cATTAGGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTg                                                                                       <  1:5112652/93‑1 (MQ=255)

  cATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTg                                                                                       <  1:5307703/93‑1 (MQ=255)

  cATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTg                                                                                       <  2:108094/93‑1 (MQ=255)

      aCGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGtaat                                                                                   >  1:5341144/1‑93 (MQ=255)

      aCGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGtaat                                                                                   <  1:3160907/93‑1 (MQ=255)

      aCGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGtaat                                                                                   <  1:5826969/93‑1 (MQ=255)

        gAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGtaataa                                                                                 >  1:5492992/1‑93 (MQ=255)

            cgcgAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACAGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCtt                                                                             <  1:5224721/93‑1 (MQ=255)

             gcgAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTc                                                                            <  1:1237902/93‑1 (MQ=255)

              cgAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCg                                                                           <  1:4158136/93‑1 (MQ=255)

                 gTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGta                                                                        >  2:1427311/1‑93 (MQ=255)

                 gTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGta                                                                        >  1:5864226/1‑93 (MQ=255)

                 gTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGta                                                                        <  2:766532/93‑1 (MQ=255)

                  tGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGtat                                                                       <  1:6370078/93‑1 (MQ=255)

                   gAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGtata                                                                      >  1:6192820/1‑93 (MQ=255)

                   gAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGtata                                                                      <  2:2573749/93‑1 (MQ=255)

                   gAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGtata                                                                      <  2:4586467/93‑1 (MQ=255)

                    aaaGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTatat                                                                     <  2:1591121/93‑1 (MQ=255)

                     aaGACTGCGTGGTGCAGCTGCGCTGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATAtt                                                                    <  1:2781782/93‑1 (MQ=255)

                      aGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTg                                                                   <  1:6228145/93‑1 (MQ=255)

                       gACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGc                                                                  <  2:358842/93‑1 (MQ=255)

                       gACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGc                                                                  <  2:418516/93‑1 (MQ=255)

                       gACGGCGTGGGGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGc                                                                  >  1:1824389/1‑93 (MQ=255)

                        gcGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCa                                                                 <  2:2746018/92‑1 (MQ=255)

                         cGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAg                                                                <  1:1222276/93‑1 (MQ=255)

                         cGGCGTAGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAg                                                                <  2:5369458/93‑1 (MQ=255)

                          ggCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAgg                                                               >  1:2382578/1‑93 (MQ=255)

                           gCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGa                                                              >  2:866081/1‑93 (MQ=255)

                           gCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGa                                                              <  1:3759599/93‑1 (MQ=255)

                            cGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGAc                                                             <  2:4944565/93‑1 (MQ=255)

                            cGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGAc                                                             <  1:2606681/93‑1 (MQ=255)

                            cGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGAc                                                             <  2:3459589/93‑1 (MQ=255)

                             gtggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACa                                                            <  2:5841090/93‑1 (MQ=255)

                              tggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAt                                                           <  1:4561339/93‑1 (MQ=255)

                              tggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAt                                                           <  1:3067455/93‑1 (MQ=255)

                               ggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAtt                                                          <  2:4500798/93‑1 (MQ=255)

                               ggtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAtt                                                          <  1:3113926/93‑1 (MQ=255)

                                gtgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAttt                                                         <  2:1926403/93‑1 (MQ=255)

                                 tgCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAtttt                                                        <  2:3804055/93‑1 (MQ=255)

                                  tcAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAttttt                                                       <  2:1519902/92‑1 (MQ=255)

                                  gCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAttttt                                                       <  2:595901/93‑1 (MQ=255)

                                   cAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACAtttttt                                                      <  2:5720744/93‑1 (MQ=255)

                                     gCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTaa                                                    <  1:221953/93‑1 (MQ=255)

                                     gCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTaa                                                    >  2:1391027/1‑93 (MQ=255)

                                      cTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTaaa                                                   <  2:2516059/93‑1 (MQ=255)

                                       tGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAAc                                                  >  1:675615/1‑93 (MQ=255)

                                        gcgcGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACt                                                 <  2:3398634/93‑1 (MQ=255)

                                          gcgGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACttt                                               <  1:5971800/93‑1 (MQ=255)

                                           cgGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACtttt                                              <  1:3777148/93‑1 (MQ=255)

                                             gTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTg                                            >  2:859105/1‑93 (MQ=255)

                                              ttAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGt                                           <  2:5650249/93‑1 (MQ=255)

                                               tAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGtt                                          <  2:3815435/93‑1 (MQ=255)

                                               tAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGtt                                          <  2:5424637/93‑1 (MQ=255)

                                               tAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGtt                                          <  1:6094179/93‑1 (MQ=255)

                                               tAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGtt                                          <  1:3277403/93‑1 (MQ=255)

                                               tAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGGATATTGCAGGACATTTTTTAAACTTTTTGtt                                          <  1:1328163/93‑1 (MQ=255)

                                                aaTGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGttt                                         <  2:2854461/93‑1 (MQ=255)

                                                aaTGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGttt                                         <  2:4412957/93‑1 (MQ=255)

                                                 aTGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGtttt                                        <  1:782045/93‑1 (MQ=255)

                                                  tGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTa                                       <  2:5307294/93‑1 (MQ=255)

                                                  tGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTa                                       <  2:2983729/93‑1 (MQ=255)

                                                   gTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAt                                      <  1:5431183/93‑1 (MQ=255)

                                                   gTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAt                                      <  1:1689141/93‑1 (MQ=255)

                                                    ttttAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAtt                                     <  1:4340409/93‑1 (MQ=255)

                                                    ttttAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAtt                                     <  1:4007110/93‑1 (MQ=255)

                                                       tAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAttttt                                  <  2:5341626/93‑1 (MQ=255)

                                                        aaCGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAtttttt                                 >  1:1609021/1‑93 (MQ=255)

                                                        aaCGGGAGGCCAAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTAtttttt                                 <  1:4456202/93‑1 (MQ=255)

                                                          cGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGt                               <  1:4097445/93‑1 (MQ=255)

                                                          cGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGt                               <  2:3078614/93‑1 (MQ=255)

                                                          cGGGAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGt                               <  1:4927702/93‑1 (MQ=255)

                                                           gggAGGCGCACTGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtt                              <  2:6464751/93‑1 (MQ=255)

                                                           gggAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtt                              <  2:1142715/93‑1 (MQ=255)

                                                           gggAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtt                              <  2:94881/93‑1 (MQ=255)

                                                            ggAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGttt                             <  2:2142046/93‑1 (MQ=255)

                                                             gAGGCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGtttt                            <  1:4361547/93‑1 (MQ=255)

                                                               ggCGCAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTa                          <  1:2659538/93‑1 (MQ=255)

                                                                  gtaaTCCCTACCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAttt                       <  1:3924/91‑1 (MQ=255)

                                                                   cAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAtttt                      <  1:2922827/93‑1 (MQ=255)

                                                                   cAATGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAtttt                      <  1:146624/93‑1 (MQ=255)

                                                                    aaTGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAttttt                     <  1:2046691/93‑1 (MQ=255)

                                                                     aTGCCTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAtttttt                    >  1:147759/1‑93 (MQ=255)

                                                                        ccTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTaaa                 <  1:4740556/93‑1 (MQ=255)

                                                                         cTCCCCTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAg                <  2:1296759/93‑1 (MQ=255)

                                                                            cccTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGAt             <  1:4775239/93‑1 (MQ=255)

                                                                             ccTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATa            <  1:4296043/93‑1 (MQ=255)

                                                                              cTTTTTGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATaa           >  1:4184102/1‑93 (MQ=255)

                                                                               tttttGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAAt          <  2:6219730/93‑1 (MQ=255)

                                                                               tttttGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTAATTTTTAAAGGATAAt          <  2:3219636/93‑1 (MQ=255)

                                                                                   tGCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCaaa      <  1:1908175/93‑1 (MQ=255)

                                                                                    gCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt     <  2:6419962/93‑1 (MQ=255)

                                                                                    gCATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAAt     <  1:2057628/93‑1 (MQ=255)

                                                                                     cATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATg    <  2:4996484/93‑1 (MQ=255)

                                                                                     cATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATg    >  2:4428593/1‑93 (MQ=255)

                                                                                     cATGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATg    >  1:2456003/1‑93 (MQ=255)

                                                                                      aTGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGt   <  2:1845689/93‑1 (MQ=255)

                                                                                       tGGCCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGtt  <  2:2430293/93‑1 (MQ=255)

AACATTACGAAGCGCGAGTGAAAGACGGCGTGGTGCAGCTGCGCGGTTAATGTTTTAACGGGAGGCGCAATGCCTCCCCTTTTTGCATGGTCCTGTAATAATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTT  >  NC_000913/3494465‑3494644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`