BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,621,612	T→C	intergenic (+199/‑397)	yhhH → / → yhhI	hypothetical protein/putative receptor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,621,612	0	T	C	100.0%	542.8 / NA	163	intergenic (+199/‑397)	yhhH/yhhI	hypothetical protein/putative receptor
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/52); total (111/52)

Only 100 of 166 total aligned reads displayed.

CAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCAATTGAAT  >  NC_000913/3621522‑3621701

cAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCtg                                                                                         >  2:398687/1‑93 (MQ=18)

 aaaTACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCtga                                                                                        >  1:2685241/1‑93 (MQ=21)

    tacatacCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCtgatga                                                                                     >  2:5938969/1‑93 (MQ=21)

        tacCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGc                                                                                 <  1:817853/93‑1 (MQ=255)

         acCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCa                                                                                >  1:3892505/1‑93 (MQ=255)

             gaaaagaaaGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTc                                                                            >  1:3456056/1‑93 (MQ=255)

             gaaaagaaaGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTc                                                                            >  2:4165157/1‑93 (MQ=255)

                aagaaagGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCtt                                                                         <  1:4827453/93‑1 (MQ=37)

                 agaaagGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTg                                                                        <  1:1576213/93‑1 (MQ=37)

                   aaagGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGaa                                                                      >  2:1854387/1‑93 (MQ=255)

                   aaagGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGaa                                                                      >  2:6362060/1‑93 (MQ=255)

                    aagGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGaaa                                                                     >  1:5377802/1‑93 (MQ=37)

                     agGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGaaaa                                                                    >  2:6364030/1‑93 (MQ=37)

                      ggCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATTGCAATTCCTTGAAAAg                                                                   >  1:4841447/1‑93 (MQ=255)

                      ggCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAg                                                                   >  1:1739917/1‑93 (MQ=37)

                      ggCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAg                                                                   >  2:902241/1‑93 (MQ=255)

                       gCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAgg                                                                  >  1:2357606/1‑93 (MQ=255)

                          aGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGAtt                                                               >  1:2947138/1‑93 (MQ=37)

                           gTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGAttt                                                              >  2:3671660/1‑93 (MQ=255)

                           gTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGAttt                                                              >  1:1877567/1‑93 (MQ=255)

                           gTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGAttt                                                              >  2:4968878/1‑93 (MQ=255)

                            tAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTc                                                             <  2:3918378/93‑1 (MQ=255)

                              aaGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCAt                                                           >  1:4033761/1‑93 (MQ=255)

                              aaGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCAt                                                           >  2:2884221/1‑93 (MQ=255)

                               agagTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATc                                                          >  2:4401644/1‑93 (MQ=255)

                               agagTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATc                                                          >  1:2387845/1‑93 (MQ=255)

                               agagTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATc                                                          >  2:912460/1‑93 (MQ=255)

                               agagTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATc                                                          <  1:1476895/93‑1 (MQ=255)

                                gagTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCt                                                         >  2:6214414/1‑93 (MQ=255)

                                 agTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTg                                                        <  1:2033507/93‑1 (MQ=37)

                                 agTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTg                                                        >  1:4012317/1‑93 (MQ=255)

                                  gTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGc                                                       >  2:3475953/1‑93 (MQ=255)

                                  gTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGc                                                       >  1:1873729/1‑93 (MQ=37)

                                   tATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGcc                                                      >  2:3009121/1‑93 (MQ=255)

                                     tGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCag                                                    >  2:5686288/1‑93 (MQ=255)

                                      ggTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCaga                                                   >  1:6111081/1‑93 (MQ=255)

                                       gTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCagag                                                  <  1:4391205/93‑1 (MQ=255)

                                          tatataATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGAGCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTAt                                               <  2:3836225/93‑1 (MQ=255)

                                            tataATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTa                                             >  2:4998270/1‑93 (MQ=255)

                                            tataATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTa                                             >  1:5844422/1‑93 (MQ=255)

                                             ataataAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTAc                                            >  1:4630749/1‑93 (MQ=255)

                                              taataaATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACa                                           >  2:76101/1‑93 (MQ=255)

                                              taataaATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACa                                           >  2:2512348/1‑93 (MQ=255)

                                                 taaATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGtt                                        <  1:6129706/93‑1 (MQ=255)

                                                  aaaTGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTa                                       >  1:2306835/1‑93 (MQ=25)

                                                   aaTGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTaa                                      >  1:213847/1‑93 (MQ=21)

                                                    aTGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAag                                     >  1:4931733/1‑93 (MQ=18)

                                                     tGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAaga                                    <  1:4412362/93‑1 (MQ=21)

                                                     tGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAaga                                    >  1:3075527/1‑93 (MQ=21)

                                                     tGTAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAaga                                    <  1:3266480/93‑1 (MQ=21)

                                                       tAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAgg                                  >  1:5942544/1‑93 (MQ=21)

                                                       tAAGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAgg                                  >  2:108142/1‑93 (MQ=21)

                                                        aaGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAggg                                 <  2:2614479/93‑1 (MQ=21)

                                                         aGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAgggg                                >  1:3583764/1‑93 (MQ=25)

                                                         aGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAgggg                                <  1:1485059/93‑1 (MQ=25)

                                                         aGAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAgggg                                >  1:4997970/1‑93 (MQ=255)

                                                          gAAACTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAggggg                               >  1:5138799/1‑93 (MQ=255)

                                                           aaaCTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAgggggg                              >  2:5835288/1‑93 (MQ=255)

                                                            aaCTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGc                             >  2:2528128/1‑93 (MQ=255)

                                                             aCTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTa                                             >  1:3649599/1‑76 (MQ=19)

                                                             aCTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTa                                             <  2:3649599/76‑1 (MQ=19)

                                                             aCTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCa                            >  1:6080630/1‑93 (MQ=255)

                                                              cTAAATGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCaa                           <  2:174797/93‑1 (MQ=255)

                                                                aaaTGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGa                         >  1:883070/1‑93 (MQ=37)

                                                                aaaTGATGATGAATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGa                         >  1:1594429/1‑93 (MQ=255)

                                                                   tgatgatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGc                      <  1:2953313/93‑1 (MQ=255)

                                                                   tgatgatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGc                      <  2:5278221/93‑1 (MQ=255)

                                                                   tgatgatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGc                      <  1:6165114/93‑1 (MQ=37)

                                                                    gatgatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGGATTACAGTTAAGAGGGGGGCAAGACGCt                     >  1:683399/1‑93 (MQ=255)

                                                                      tgatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGt                   >  1:193581/1‑93 (MQ=255)

                                                                      tgatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGt                   <  1:1705316/93‑1 (MQ=255)

                                                                       gatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGtt                  >  2:948247/1‑93 (MQ=255)

                                                                       gatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGtt                  >  1:271064/1‑93 (MQ=37)

                                                                       gatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGtt                  >  1:6441316/1‑93 (MQ=37)

                                                                       gatgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGtt                  <  1:4758841/93‑1 (MQ=37)

                                                                         tgaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAg                >  1:304121/1‑93 (MQ=255)

                                                                          gaATTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGa               >  1:1232200/1‑93 (MQ=255)

                                                                           aaTTATTTCGCTTACCTGATGATCGCAATTCCTTGGAAAGGATTTCATCTCCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGAt              <  2:152523/93‑1 (MQ=255)

                                                                           aaTTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGATGGGGGCAAGACGCTGTTAGAt              >  2:3020253/1‑93 (MQ=255)

                                                                           aaTTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGAt              >  1:3015779/1‑93 (MQ=255)

                                                                           aaTTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGAt              <  1:4243664/93‑1 (MQ=37)

                                                                           aaTTATTTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGAt              <  2:4701426/93‑1 (MQ=255)

                                                                            attattTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGAtt             >  1:5547038/1‑93 (MQ=255)

                                                                             ttattTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTg            >  2:2214624/1‑93 (MQ=255)

                                                                             ttattTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTg            >  2:1123770/1‑93 (MQ=255)

                                                                              tattTCGGTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTgg           >  1:6358196/1‑93 (MQ=255)

                                                                              tattTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTgg           >  2:5490172/1‑93 (MQ=255)

                                                                              tattTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTgg           >  1:260260/1‑93 (MQ=255)

                                                                               attTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGc          >  1:5811115/1‑93 (MQ=37)

                                                                               attTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGc          >  1:6131482/1‑93 (MQ=255)

                                                                               attTCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGc          <  1:2792970/93‑1 (MQ=255)

                                                                                tttCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCa         >  2:2387997/1‑93 (MQ=255)

                                                                                tttCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCa         <  1:6293238/93‑1 (MQ=255)

                                                                                tttCGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCa         <  1:3807058/93‑1 (MQ=255)

                                                                                   cGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCAAtt      <  2:4802636/93‑1 (MQ=255)

                                                                                   cGCTTACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCAAtt      <  2:2111365/93‑1 (MQ=255)

                                                                                      ttACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCAATTGaa   >  1:1083220/1‑93 (MQ=255)

                                                                                      ttACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCAATTGaa   >  1:390392/1‑93 (MQ=255)

                                                                                      ttACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCAATTGaa   >  2:5340877/1‑93 (MQ=255)

                                                                                       tACCTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCAATTGAAt  >  1:5282653/1‑93 (MQ=255)

CAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGGGGCAAGACGCTGTTAGATTGGCAATTGAAT  >  NC_000913/3621522‑3621701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`