BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,661,087	T→C	L1015P (CTG→CCG)	yhiV →	putative transport system permease protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,661,087	0	T	C	100.0%	962.6 / NA	273	L1015P (CTG→CCG)	yhiV	putative transport system permease protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (114/159); total (114/159)

Only 100 of 278 total aligned reads displayed.

TGCCGCTGGTTATCAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCTGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTAAGG  >  NC_000913/3660997‑3661176

   cGCTGGTTATCAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCaa                                                                                      <  2:2007176/93‑1 (MQ=255)

    gCTGGTTATCAGTCATGGCGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGACGCAACAGCGCCGGCCAt                                                                                     >  1:72253/1‑93 (MQ=255)

     cTGGTTATCAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAAtt                                                                                    <  2:3758316/93‑1 (MQ=255)

        gTTATCAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTAc                                                                                 <  1:4121470/93‑1 (MQ=255)

          tATCAGTCATGGTGCCGGTTCCGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTGTGCCGCAACAGTGCCGGCAATTTACtt                                                                               <  2:5665308/93‑1 (MQ=255)

           aTCAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTc                                                                              <  2:1496249/93‑1 (MQ=255)

             cAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCgc                                                                            <  1:6003395/93‑2 (MQ=255)

             cAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGt                                                                            >  1:4188840/1‑93 (MQ=255)

             cAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGt                                                                            <  1:1864669/93‑1 (MQ=255)

             cAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGt                                                                            <  2:5316839/93‑1 (MQ=255)

              aGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGtt                                                                           <  1:3109336/93‑1 (MQ=255)

                tCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTcc                                                                         <  2:3871801/93‑1 (MQ=255)

                    ggTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTc                                                                     <  1:5835798/93‑1 (MQ=255)

                     gTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCt                                                                    >  2:1572657/1‑93 (MQ=255)

                     gTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCt                                                                    <  1:1022943/93‑1 (MQ=255)

                      tGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCtt                                                                   <  1:6375697/93‑1 (MQ=255)

                      tGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCtt                                                                   >  1:4712590/1‑93 (MQ=255)

                      tGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCtt                                                                   >  2:1789051/1‑93 (MQ=255)

                       gCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCttt                                                                  <  1:5304948/93‑1 (MQ=255)

                       gCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCttt                                                                  <  1:175124/93‑1 (MQ=255)

                        ccGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCtttt                                                                 <  1:1146477/93‑1 (MQ=255)

                         cGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCttttt                                                                <  1:925955/93‑1 (MQ=255)

                           gTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCg                                                              >  1:5737166/1‑93 (MQ=255)

                           gTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCg                                                              <  2:5515205/93‑1 (MQ=255)

                           gTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCg                                                              <  2:1281054/93‑1 (MQ=255)

                            ttCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGt                                                             <  2:5018782/93‑1 (MQ=255)

                              cTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTg                                                           <  2:4232704/93‑1 (MQ=255)

                               tGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGt                                                          <  2:3288477/93‑1 (MQ=255)

                               tGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGt                                                          <  2:2400743/93‑1 (MQ=255)

                                ggCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTa                                                         <  2:1885870/93‑1 (MQ=255)

                                ggCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTa                                                         <  1:3420367/93‑1 (MQ=255)

                                   gcgcAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTg                                                      >  1:2269157/1‑93 (MQ=255)

                                    cgcAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTgg                                                     >  1:2024057/1‑93 (MQ=255)

                                       aaaaCGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAAc                                                  >  2:4124058/1‑93 (MQ=255)

                                       aaaaCGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAAc                                                  >  2:374713/1‑93 (MQ=255)

                                        aaaCGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAAct                                                 >  2:3948850/1‑92 (MQ=255)

                                            gcgGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACAtctc                                             <  1:824491/93‑1 (MQ=255)

                                            gcgGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACAtctc                                             <  2:4858752/93‑1 (MQ=255)

                                            gcgGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACAtctc                                             <  2:6136066/93‑1 (MQ=255)

                                            ccgGTAGGTACCGGCGTGATGGGCCGGATGTTTGCCGCAACAGTGCCGGCAATTTCCTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACAtctc                                             <  1:1679382/92‑1 (MQ=255)

                                             cgGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATctct                                            >  1:1029151/1‑93 (MQ=255)

                                              ggtaggtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCtt                                           <  2:3046427/93‑1 (MQ=255)

                                              ggtaggtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCtt                                           <  1:110746/93‑1 (MQ=255)

                                              ggtaggtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCtt                                           <  1:7487/93‑1 (MQ=255)

                                               gtaggtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCttt                                          <  1:24494/93‑1 (MQ=255)

                                                 aggtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGc                                        <  2:2641431/93‑1 (MQ=255)

                                                  ggtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGcc                                       >  2:1597330/1‑93 (MQ=255)

                                                  ggtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGcc                                       <  1:1973211/93‑1 (MQ=255)

                                                  ggtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGcc                                       <  2:4711804/93‑1 (MQ=255)

                                                  ggtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGcc                                       >  2:1242651/1‑93 (MQ=255)

                                                   gtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGccc                                      <  1:5937298/93‑1 (MQ=255)

                                                   gtaCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGccc                                      <  1:3224650/93‑1 (MQ=255)

                                                     aCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGc                                    <  1:1234806/93‑1 (MQ=255)

                                                     aCCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGc                                    <  1:5068017/93‑1 (MQ=255)

                                                      ccGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCt                                   >  2:390031/1‑93 (MQ=255)

                                                       cGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCtt                                  <  2:3158688/93‑1 (MQ=255)

                                                        ggCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGTCTGCttt                                 >  1:499509/1‑93 (MQ=255)

                                                        ggCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCttt                                 <  1:4632375/93‑1 (MQ=255)

                                                        ggCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCttt                                 <  2:1400152/93‑1 (MQ=255)

                                                         gCGTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTa                                >  2:5169924/1‑93 (MQ=255)

                                                           gTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTaaa                              >  1:1399053/1‑93 (MQ=255)

                                                           gTGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTaaa                              <  1:1186940/93‑1 (MQ=255)

                                                            tGATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTaaaa                             <  2:6027040/93‑1 (MQ=255)

                                                             gATGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTaaaaa                            >  1:3314457/1‑93 (MQ=255)

                                                              aTGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTaaaaaa                           <  2:1681095/93‑1 (MQ=255)

                                                               tGGGCGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAg                          <  1:6082015/93‑1 (MQ=255)

                                                                   cGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTa                      <  1:4223051/93‑1 (MQ=255)

                                                                   cGGGATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTa                      >  1:623131/1‑93 (MQ=255)

                                                                    gggATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTaa                     <  2:2782858/93‑1 (MQ=255)

                                                                    gggATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTaa                     <  2:4433829/93‑1 (MQ=255)

                                                                     ggATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAAc                    >  2:1941167/1‑93 (MQ=255)

                                                                     ggATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAAc                    >  1:4520967/1‑93 (MQ=255)

                                                                     ggATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAAc                    >  1:1915691/1‑93 (MQ=255)

                                                                     ggATGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAAc                    >  2:6263972/1‑93 (MQ=255)

                                                                       aTGTTTGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACgt                  <  2:4681015/93‑1 (MQ=255)

                                                                          tttGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTa               <  1:2256525/93‑1 (MQ=255)

                                                                           ttGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTaa              >  2:5451278/1‑93 (MQ=255)

                                                                           ttGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTaa              >  1:2834800/1‑93 (MQ=255)

                                                                           ttGCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTaa              >  1:5228363/1‑93 (MQ=255)

                                                                             gCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAAt            <  2:354742/93‑1 (MQ=255)

                                                                             gCCGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAAt            <  1:4400290/93‑1 (MQ=255)

                                                                              ccGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATg           <  1:3049667/93‑1 (MQ=255)

                                                                               cGCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATga          >  2:6008631/1‑93 (MQ=255)

                                                                                gCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATgag         <  2:3033489/93‑1 (MQ=255)

                                                                                gCAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATgag         >  1:1587247/1‑93 (MQ=255)

                                                                                 cAACAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATgaga        <  2:2930561/93‑1 (MQ=255)

                                                                                  aaCAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGagag       <  1:3583658/93‑1 (MQ=255)

                                                                                  aaCAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGagag       <  1:3924616/93‑1 (MQ=255)

                                                                                   aCAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGt      >  2:4281424/1‑93 (MQ=255)

                                                                                   aCAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGt      >  1:3658137/1‑93 (MQ=255)

                                                                                   aCAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGt      >  1:4029701/1‑93 (MQ=255)

                                                                                   aCAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGt      >  1:1334790/1‑93 (MQ=255)

                                                                                    cAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTa     >  2:6398710/1‑93 (MQ=255)

                                                                                    cAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTa     >  2:2219302/1‑93 (MQ=255)

                                                                                    cAGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTa     >  1:484334/1‑93 (MQ=255)

                                                                                     aGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTaa    <  1:2657803/93‑1 (MQ=255)

                                                                                     aGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTaa    <  2:2334083/93‑1 (MQ=255)

                                                                                     aGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTaa    <  1:3808351/93‑1 (MQ=255)

                                                                                     aGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTaa    <  2:1071618/93‑1 (MQ=255)

                                                                                     aGTGCCGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTaa    <  1:5472172/93‑1 (MQ=255)

TGCCGCTGGTTATCAGTCATGGTGCCGGTTCTGGCGCGCAAAACGCGGTAGGTACCGGCGTGATGGGCGGGATGTTTGCCGCAACAGTGCTGGCAATTTACTTCGTTCCGGTCTTTTTCGTTGTAGTGGAACATCTCTTTGCCCGCTTTAAAAAAGCGTAACGTGTAAATGAGAGTAAGG  >  NC_000913/3660997‑3661176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`