BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	522,693	T→C	L70P (CTG→CCG)	rhsD →	RhsD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	522,693	0	T	C	100.0%	701.3 / NA	204	L70P (CTG→CCG)	rhsD	RhsD
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (121/83); total (121/83)

Only 100 of 224 total aligned reads displayed.

GGGCGGGATGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAGCGCCTT  >  NC_000913/522604‑522782

gggcgggATGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCgccgcc                                                                                        >  2:5276548/1‑93 (MQ=255)

 ggcgggATGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCccgccgccg                                                                                       >  1:2048586/1‑93 (MQ=255)

    gggATGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTc                                                                                    <  1:135616/93‑1 (MQ=255)

     ggATGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCa                                                                                   >  1:4912300/1‑93 (MQ=255)

     ggATGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCa                                                                                   >  2:2950667/1‑93 (MQ=255)

     ggATGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCa                                                                                   >  1:675312/1‑93 (MQ=255)

      gATGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCAt                                                                                  >  1:3019581/1‑93 (MQ=255)

        tGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATtc                                                                                >  1:3795685/1‑93 (MQ=255)

        tGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATtc                                                                                <  1:2221118/93‑1 (MQ=255)

          ccTTCGGGCACCCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATtctc                                                                              <  1:313617/92‑1 (MQ=255)

          aCTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATtctc                                                                              >  2:4797185/1‑93 (MQ=255)

           cTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATtctct                                                                             >  1:932089/1‑93 (MQ=255)

           cTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATtctct                                                                             >  1:5689979/1‑93 (MQ=255)

            ttCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATtctctc                                                                            <  2:3472932/93‑1 (MQ=255)

              cGGCCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTccc                                                                          <  1:3095289/93‑1 (MQ=255)

               gggCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCg                                                                         >  2:1914851/1‑93 (MQ=255)

                ggCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGc                                                                        >  2:82914/1‑93 (MQ=255)

                  cAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCAc                                                                      <  1:5218890/93‑1 (MQ=255)

                  cAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCAc                                                                      >  2:5617353/1‑93 (MQ=255)

                  cAACCCGATAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCAc                                                                      <  1:469367/93‑1 (MQ=255)

                   aaCCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCAcc                                                                     >  2:4398202/1‑93 (MQ=255)

                   aaCCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCAcc                                                                     >  2:321210/1‑93 (MQ=255)

                   aaCCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCAcc                                                                     <  2:5721314/93‑1 (MQ=255)

                    aCCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCt                                                                    >  1:745474/1‑93 (MQ=255)

                     cccGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTa                                                                   >  1:2128379/1‑93 (MQ=255)

                     cccGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTa                                                                   <  1:1613412/93‑1 (MQ=255)

                     cccGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTa                                                                   >  2:4766284/1‑93 (MQ=255)

                      ccGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTAc                                                                  >  2:3452170/1‑93 (MQ=255)

                        gggaaaTCCCCGGCTGGGGGCGAAGGTGCTGCCCGGCGAGCCGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTAcag                                                                <  1:3050647/90‑1 (MQ=21)

                         gTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTAcagc                                                               <  1:3863824/93‑1 (MQ=255)

                         gTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTAcagc                                                               >  2:3547746/1‑93 (MQ=255)

                            aaTCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACagcagc                                                            <  1:4565556/93‑1 (MQ=255)

                            aaTCCGCTCCTGGGGGCGAAGGTGCTGCCCGGCGAAACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACagcagc                                                            <  1:6432549/93‑1 (MQ=255)

                             aTCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCt                                                           <  2:2213587/93‑1 (MQ=255)

                              tCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTa                                                          <  2:1839941/93‑1 (MQ=255)

                              tCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTa                                                          >  1:1040076/1‑93 (MQ=255)

                               ccGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTAc                                                         <  1:4195660/93‑1 (MQ=255)

                                cGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTAcc                                                        >  2:3046695/1‑93 (MQ=255)

                                 gctgctGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCg                                                       >  2:2149125/1‑93 (MQ=255)

                                 gctgctGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCg                                                       >  1:3930565/1‑93 (MQ=255)

                                      tgGGGGCGAAGGTGCTGCCCGGTGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGa                                                  >  2:2145184/1‑93 (MQ=255)

                                       gggggCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGaa                                                 >  1:1410748/1‑93 (MQ=255)

                                        ggggCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAg                                                >  2:4072404/1‑93 (MQ=255)

                                        ggggCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAg                                                <  1:5485964/93‑1 (MQ=255)

                                         gggCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGa                                               <  1:2755214/93‑1 (MQ=255)

                                         gggCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGa                                               <  1:3196235/93‑1 (MQ=255)

                                          ggCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGAc                                              >  1:4994194/1‑93 (MQ=255)

                                           gCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACg                                             >  1:604919/1‑93 (MQ=255)

                                            ggAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGc                                            <  2:6277300/92‑1 (MQ=255)

                                            cGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGc                                            >  1:5996149/1‑93 (MQ=255)

                                            cGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGc                                            <  1:6217714/93‑1 (MQ=255)

                                             gAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGCAGACGcc                                           >  2:148379/1‑93 (MQ=255)

                                              aaGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCt                                          >  2:2408574/1‑93 (MQ=255)

                                               aGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTg                                         >  1:4045441/1‑93 (MQ=255)

                                               aGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTg                                         >  1:2349410/1‑93 (MQ=255)

                                               aGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTg                                         <  1:5719462/93‑1 (MQ=255)

                                                ggTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGc                                        >  2:4964968/1‑93 (MQ=255)

                                                   gtgtcccGGCGAGACGTACCTTGCGCTGCCCGGCGCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCAcc                                     <  1:4447465/89‑1 (MQ=21)

                                                     tgcCCGGCGAGACGGCCCTTGCGCTCCCCGGCCCGCCGCCGTTCATCCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCgg                                   <  1:3315344/93‑1 (MQ=21)

                                                     tgcCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCgg                                   >  2:2362548/1‑93 (MQ=255)

                                                     tgcCCGGCGAGACGGACCTTGCGCTGCCCGGCACGCCGCCGTGCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCgg                                   <  1:4309828/93‑1 (MQ=255)

                                                      gcCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGt                                  >  1:414301/1‑93 (MQ=255)

                                                        ccGGCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTgg                                >  2:2456843/1‑93 (MQ=255)

                                                         cgccGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTggg                               <  1:1095060/90‑1 (MQ=255)

                                                           gCGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCg                             >  1:3668047/1‑93 (MQ=255)

                                                            cGAGACGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGt                            <  1:3427587/93‑1 (MQ=255)

                                                             gagaCGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGtt                           <  2:2550861/93‑1 (MQ=255)

                                                              agaCGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGttt                          >  2:2738640/1‑93 (MQ=255)

                                                              agaCGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGttt                          <  1:5570706/93‑1 (MQ=255)

                                                               gaCGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGtttt                         <  1:788932/93‑1 (MQ=255)

                                                               gaCGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGtttt                         <  2:86812/93‑1 (MQ=255)

                                                               gaCGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGtttt                         >  2:6461320/1‑93 (MQ=255)

                                                                aCGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTc                        >  2:1147794/1‑93 (MQ=255)

                                                                aCGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTc                        >  2:1398685/1‑93 (MQ=255)

                                                                 cGGCCCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCg                       <  2:6026844/93‑1 (MQ=255)

                                                                 cGGACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCg                       <  2:1523435/93‑1 (MQ=255)

                                                                  ggcccTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCgg                      <  1:5660826/90‑1 (MQ=255)

                                                                   gcccTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGc                     <  2:1198935/91‑1 (MQ=255)

                                                                   gACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGc                     >  2:3379262/1‑93 (MQ=255)

                                                                   gACCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGc                     >  1:5329590/1‑93 (MQ=255)

                                                                    aCCTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGcc                    >  2:2194044/1‑93 (MQ=255)

                                                                     ccTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGccc                   >  1:4939631/1‑93 (MQ=255)

                                                                     ccTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGccc                   <  2:6151470/93‑1 (MQ=255)

                                                                      cTTGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGcccc                  >  1:4058518/1‑93 (MQ=255)

                                                                        tGCGCTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCgg                >  1:5128340/1‑93 (MQ=255)

                                                                          cgcTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCt              >  1:5060571/1‑93 (MQ=255)

                                                                          cgcTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCt              <  2:4196090/93‑1 (MQ=255)

                                                                           gcTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTg             <  1:6087689/93‑1 (MQ=255)

                                                                           gcTGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTg             >  1:5926046/1‑93 (MQ=255)

                                                                             tGCCCGGCCCGCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGa           >  2:4024899/1‑93 (MQ=255)

                                                                               cccggcccgCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGaaa         >  1:2600010/1‑93 (MQ=255)

                                                                                 cggcccgCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAgc       >  2:2485636/1‑93 (MQ=255)

                                                                                 cggcccgCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAgc       <  2:5161302/93‑1 (MQ=255)

                                                                                  ggcccgCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAgcg      >  1:1982371/1‑93 (MQ=255)

                                                                                    cccgCCGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAGCGcc    <  1:4008962/93‑1 (MQ=255)

                                                                                     ccgccgccgTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAGCGCCt   >  1:1322673/1‑93 (MQ=255)

                                                                                     ccgccgccgTTCATACTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCAGTGAGCGTTTTCGGCCCCGGCTGGAAAGCGCCt   <  2:6464300/93‑1 (MQ=25)

                                                                                      cgccgcCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAGCGCCtt  >  2:5332403/1‑93 (MQ=255)

                                                                                      cgccgcCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAGCGCCtt  <  2:3876781/93‑1 (MQ=255)

                                                                                      cgccgcCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAGCGCCtt  >  1:4780169/1‑93 (MQ=255)

GGGCGGGATGACTTCGGGCAACCCGGTAAATCCGCTGCTGGGGGCGAAGGTGCTGCCCGGCGAGACGGACCTTGCGCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGCTACCGGACGAAGACGCCTGCACCGGTGGGCGTTTTCGGCCCCGGCTGGAAAGCGCCTT  >  NC_000913/522604‑522782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`