BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	562,546	A→G	intergenic (+4/‑7)	sfmH → / → sfmF	involved in fimbrial asembly/putative fimbrial‑like protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	562,546	0	A	G	100.0%	833.3 / NA	241	intergenic (+4/‑7)	sfmH/sfmF	involved in fimbrial asembly/putative fimbrial‑like protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (102/139); total (102/139)

Only 100 of 246 total aligned reads displayed.

CGCGCCTGGCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTACGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGAACGATTAA  >  NC_000913/562456‑562635

  cgcCTGGCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCTGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGga                                                                                       <  1:299307/93‑1 (MQ=255)

  cgcCTGGCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGga                                                                                       <  1:50578/93‑1 (MQ=255)

   gcCTGGCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGgag                                                                                      <  1:5408357/93‑1 (MQ=255)

    ccTGGCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGgaga                                                                                     >  2:2144282/1‑93 (MQ=255)

      tGGCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAAt                                                                                   <  2:4150919/93‑1 (MQ=255)

       ggCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATg                                                                                  <  2:745052/93‑1 (MQ=255)

       ggCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATg                                                                                  >  1:1555551/1‑93 (MQ=255)

        gCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATga                                                                                 <  2:950565/93‑1 (MQ=255)

        gCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATga                                                                                 <  2:4951714/93‑1 (MQ=255)

          cTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATgaga                                                                               <  2:4349864/93‑1 (MQ=255)

           tATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGagaa                                                                              >  2:3609703/1‑93 (MQ=255)

           tATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGagaa                                                                              >  1:1146851/1‑93 (MQ=255)

            aTCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGagaag                                                                             <  1:336960/93‑1 (MQ=255)

             tCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGagaaga                                                                            <  1:5739220/93‑1 (MQ=255)

             tCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGagaaga                                                                            <  1:5992328/93‑1 (MQ=255)

              cAGTATTACCGCGCAATAACCGACCGAAGGGCCGGTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAagag                                                                           <  2:2187207/93‑1 (MQ=255)

                gTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTa                                                                         >  2:2599792/1‑93 (MQ=255)

                  aTTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTAct                                                                       >  1:4536525/1‑93 (MQ=255)

                     aCCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCtt                                                                    <  2:4776325/93‑1 (MQ=255)

                      ccGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCttt                                                                   <  1:342267/93‑1 (MQ=255)

                      ccGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCttt                                                                   >  2:599911/1‑93 (MQ=255)

                       cGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTa                                                                  <  1:6460974/93‑1 (MQ=255)

                       cGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTa                                                                  <  1:2848943/93‑1 (MQ=255)

                        ggTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAg                                                                 <  1:2579106/93‑1 (MQ=255)

                        ggTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAg                                                                 <  2:3493749/93‑1 (MQ=255)

                        ggTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGACGATTATCAATAAGGTGCGGAGAATGAGAAGAGTACTCTTTAg                                                                 >  1:3823069/1‑93 (MQ=255)

                          tCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCt                                                               <  1:2164494/93‑1 (MQ=255)

                           cAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTg                                                              >  1:656218/1‑93 (MQ=255)

                           cAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTg                                                              <  1:1320176/93‑1 (MQ=255)

                           cAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTg                                                              >  2:4650992/1‑93 (MQ=255)

                            aaaaaCCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGt                                                             >  2:1970005/1‑93 (MQ=255)

                               aagcgaccgaAGGGCCGTTTAGCGCGCTGGTGTATTTACGCGTCGATTATCAATGAGGTGCGAAGAATGAGAAGAGTACTCTTTAGCTGTTTc                                                          <  2:5025332/90‑1 (MQ=255)

                               aaCCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTc                                                          <  2:2824585/93‑1 (MQ=255)

                               aaCCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTc                                                          >  1:1478049/1‑93 (MQ=255)

                               aaCCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTc                                                          >  1:4835676/1‑93 (MQ=255)

                               aaCCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTc                                                          <  2:4174634/93‑1 (MQ=255)

                                 ccgaccgaAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTg                                                        <  2:1318336/93‑1 (MQ=255)

                                  cgaccgaAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGc                                                       >  1:2658622/1‑93 (MQ=255)

                                  cgaccgaAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGc                                                       <  1:3910026/93‑1 (MQ=255)

                                   gaccgaAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCg                                                      <  2:5709719/93‑1 (MQ=255)

                                   gaccgaAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCg                                                      <  2:720679/93‑1 (MQ=255)

                                   gaccgaAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCg                                                      >  2:3823377/1‑93 (MQ=255)

                                   gaccgaAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCg                                                      >  2:1707659/1‑93 (MQ=255)

                                   gaccgaAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCg                                                      >  1:481957/1‑93 (MQ=255)

                                      cgaAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGc                                                   >  2:5956683/1‑93 (MQ=255)

                                        aaGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTGGCGGTTTCTCCGGCCtc                                                 >  1:104968/1‑92 (MQ=255)

                                        aaGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTa                                                 >  2:5203171/1‑93 (MQ=255)

                                         aGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTAc                                                <  1:1669053/93‑1 (MQ=255)

                                          gggCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACt                                               >  2:5975897/1‑93 (MQ=255)

                                           ggCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGCAGAGTACTCTTTAGCTGTTTCTGCGGGCTACtg                                              >  1:4514491/1‑93 (MQ=255)

                                              cGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTgg                                           >  2:2732965/1‑93 (MQ=255)

                                               gTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGa                                          <  1:2130838/93‑1 (MQ=255)

                                                   aGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTc                                      <  1:4300510/93‑1 (MQ=255)

                                                     cgcgcTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCa                                    <  1:625659/93‑1 (MQ=255)

                                                      gcgcTGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAg                                   <  1:1011147/93‑1 (MQ=255)

                                                          tGGGGTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGa                               <  2:1016581/93‑1 (MQ=255)

                                                           ggggTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGAt                              >  1:5505353/1‑93 (MQ=255)

                                                            gggTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATg                             <  2:4325378/93‑1 (MQ=255)

                                                            gggTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATg                             >  1:6218918/1‑93 (MQ=255)

                                                            gggTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATg                             <  2:3723252/93‑1 (MQ=255)

                                                            gggTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATg                             >  2:3408634/1‑93 (MQ=255)

                                                             ggTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATgg                            >  2:1034365/1‑93 (MQ=255)

                                                             ggTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATgg                            <  2:1185735/93‑1 (MQ=255)

                                                              gTATTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATggg                           >  2:3343300/1‑93 (MQ=255)

                                                                aTTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCa                         >  1:1789417/1‑93 (MQ=255)

                                                                aTTTACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCa                         <  1:2211207/93‑1 (MQ=255)

                                                                 tttACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAg                        <  2:2012292/93‑1 (MQ=255)

                                                                 tttACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAg                        <  1:3704313/93‑1 (MQ=255)

                                                                  ttACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGt                       <  1:4211267/93‑1 (MQ=255)

                                                                  ttACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGt                       <  2:4538709/93‑1 (MQ=255)

                                                                   tACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGtt                      <  2:2405323/93‑1 (MQ=255)

                                                                   tACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGtt                      <  2:6280585/93‑1 (MQ=255)

                                                                   tACGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGtt                      >  1:2048950/1‑93 (MQ=255)

                                                                    aCGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTg                     <  1:5355380/93‑1 (MQ=255)

                                                                    aCGCGTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTg                     >  2:241185/1‑93 (MQ=255)

                                                                       cgTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGaac                  >  1:2517011/1‑91 (MQ=255)

                                                                       cgTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGAcc                  <  2:2476560/93‑1 (MQ=255)

                                                                        gTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGAccc                 >  1:6046366/1‑93 (MQ=255)

                                                                        gTCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGAccc                 <  2:5271553/93‑1 (MQ=255)

                                                                         tCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCt                <  2:6436937/93‑1 (MQ=255)

                                                                         tCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCt                <  2:424251/93‑1 (MQ=255)

                                                                         tCGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCt                <  1:793313/93‑1 (MQ=255)

                                                                          cGATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCtt               <  2:2540530/93‑1 (MQ=255)

                                                                           gATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCttt              <  2:4005648/93‑1 (MQ=255)

                                                                           gATTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCttt              <  2:546158/93‑1 (MQ=255)

                                                                            aTTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTa             <  1:3108728/93‑1 (MQ=255)

                                                                            aTTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTa             <  2:1810479/93‑1 (MQ=255)

                                                                            aTTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTa             <  2:5807938/93‑1 (MQ=255)

                                                                            aTTATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTa             <  2:2980774/93‑1 (MQ=255)

                                                                             ttATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAg            >  1:5639709/1‑93 (MQ=255)

                                                                              tATCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAgg           <  2:6093281/93‑1 (MQ=255)

                                                                                tCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGaa         >  1:1338028/1‑93 (MQ=255)

                                                                                tCAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGaa         >  2:548926/1‑93 (MQ=255)

                                                                                 cAATGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGAAc        <  1:4923863/93‑1 (MQ=255)

                                                                                   aTGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGAACGa      >  2:297680/1‑93 (MQ=255)

                                                                                    tGAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGAACGAt     <  1:5761944/93‑1 (MQ=255)

                                                                                     gAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGAACGAtt    >  1:168013/1‑93 (MQ=255)

                                                                                     gAGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGAACGAtt    <  2:94274/93‑1 (MQ=255)

                                                                                      aGGTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGAACGATTa   >  2:5623438/1‑93 (MQ=255)

                                                                                       ggTGCGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGAACGATTaa  >  2:175730/1‑93 (MQ=255)

CGCGCCTGGCCTATCAGTATTACCGGTCAAAAACCGACCGAAGGGCCGTTTAGCGCGCTGGGGTATTTACGCGTCGATTATCAATGAGGTACGGAGAATGAGAAGAGTACTCTTTAGCTGTTTCTGCGGGCTACTGTGGAGTTCCAGTGGATGGGCAGTTGACCCTTTAGGAACGATTAA  >  NC_000913/562456‑562635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`