| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,548 | 1 bp→GG | intergenic (‑117/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,547 | 1 | . | G | 92.5% | 510.9 / 33.6 | 160 | intergenic (‑116/‑745) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (10/2); new base G (75/73); total (85/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.59e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.41e-03 | |||||||||||
| * | NC_000913 | 3,957,548 | 0 | T | G | 99.4% | 545.9 / NA | 160 | intergenic (‑117/‑744) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (85/74); minor base C (0/1); total (85/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 163 total aligned reads displayed.
AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957471‑3957626 ||| aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑T‑ccc < 1:4084224/93‑2 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑T‑ccctca > 2:5770856/1‑89 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑T‑ccctca > 1:5068426/1‑89 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑T‑ccctca > 2:779203/1‑89 (MQ=255) taTCCGCAGATGCTAACTTAATTGTCAGTCAGGGAGTGGCTGATACATATATGGAAAAAGCCCGAAAAATCCGC‑G‑‑CTTCGCAGG‑TCCCTCAAg < 2:3470757/92‑1 (MQ=255) aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAgg > 1:4166514/1‑93 (MQ=255) tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAggg < 2:397218/93‑1 (MQ=255) ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAgggg < 1:6026670/93‑1 (MQ=255) cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGga < 2:2136648/93‑1 (MQ=255) cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGga < 1:775692/93‑1 (MQ=255) cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgaga < 1:3892346/93‑1 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgagga > 2:2445627/1‑91 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaa > 1:5111037/1‑93 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCCAGGGgagga > 2:2604226/1‑91 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAggggggga > 2:1538530/1‑89 (MQ=255) gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaaa > 1:4393914/1‑93 (MQ=255) gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATTGGAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGAC‑CCTCAAGGGGAGaaa > 1:1166106/1‑93 (MQ=255) aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaaaa > 2:5020479/1‑93 (MQ=255) gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACt > 1:3017804/1‑93 (MQ=255) gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACt > 1:4294278/1‑93 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt > 1:1639109/1‑93 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt < 1:825080/93‑1 (MQ=255) tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTa < 2:2187801/93‑1 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCCAGGGGAGGAAACTTAg > 1:514303/1‑93 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCCAGGGGAGAAAACTTAg > 2:132061/1‑93 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg > 1:1849484/1‑93 (MQ=255) aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg < 1:685222/93‑1 (MQ=255) aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg < 2:4110545/93‑1 (MQ=255) aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg > 2:5331970/1‑93 (MQ=255) cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGGAAACTTAggg > 1:5908735/1‑93 (MQ=255) cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAggg < 2:5619305/93‑1 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCCAGGGGAGAAAACTTAGGGcc > 2:1970630/1‑93 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc > 2:4962416/1‑93 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc < 1:3690437/93‑1 (MQ=255) aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCct > 2:5155373/1‑93 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc > 2:1977139/1‑93 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc > 2:5200122/1‑93 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 1:3876923/93‑1 (MQ=255) ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctct < 1:4651790/93‑1 (MQ=255) tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa > 1:3511754/1‑93 (MQ=255) tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa > 2:575637/1‑93 (MQ=255) gtcagtcgGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt < 2:3545410/93‑1 (MQ=255) tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg < 2:4185181/93‑1 (MQ=255) cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 1:474921/93‑1 (MQ=255) agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 1:378992/1‑93 (MQ=255) agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 2:2639225/1‑93 (MQ=255) agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 2:6329185/1‑93 (MQ=255) gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:579687/93‑1 (MQ=255) gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 2:5172568/1‑93 (MQ=255) gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 2:5323247/1‑93 (MQ=255) gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:4103869/93‑1 (MQ=255) gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 2:1364245/1‑93 (MQ=255) gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:5404287/93‑1 (MQ=255) tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt < 1:3275527/93‑1 (MQ=255) agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:1319164/1‑93 (MQ=255) agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 2:4016867/1‑93 (MQ=255) gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:5896571/1‑93 (MQ=255) aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGATACAAAg < 2:934872/93‑1 (MQ=255) aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg > 2:5669224/1‑93 (MQ=255) gTGGCTGGTACATATATGGCAAAAGCGAGGAAAATCC‑G‑GGTT‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 1:3465299/93‑1 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGTAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGTGCCTCTATGGGCTACAAAGTc < 2:3801826/93‑1 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTCCAAAGTc < 2:3252400/93‑1 (MQ=255) tGGCGGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 1:2343987/93‑1 (MQ=255) cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:341292/93‑1 (MQ=255) cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:5384875/93‑1 (MQ=255) cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:1915603/93‑1 (MQ=255) tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa > 1:6438646/1‑93 (MQ=255) ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:2336390/93‑1 (MQ=255) ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:1013719/93‑1 (MQ=255) ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:4715321/93‑1 (MQ=255) ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt > 2:3270577/1‑93 (MQ=255) gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 1:1358784/93‑1 (MQ=255) aCATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 2:6035863/93‑1 (MQ=255) aCATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg > 2:2995095/1‑93 (MQ=255) cATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 2:6151084/93‑1 (MQ=255) tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa < 2:3593355/93‑1 (MQ=255) tatatGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:3746387/1‑93 (MQ=255) atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:709481/93‑1 (MQ=255) atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 1:4075797/93‑1 (MQ=255) atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt > 2:572437/1‑93 (MQ=255) atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 1:3039702/93‑1 (MQ=255) tatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:2637307/93‑1 (MQ=255) tatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:451837/93‑1 (MQ=255) atGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg < 2:5821227/93‑1 (MQ=255) atGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg < 1:1583076/93‑1 (MQ=255) atGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg < 2:4920529/93‑1 (MQ=255) tGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 2:2527709/93‑1 (MQ=255) ggCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt < 2:6299508/93‑1 (MQ=255) ggCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt > 2:3080812/1‑93 (MQ=255) gCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta > 2:4028089/1‑93 (MQ=255) cAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 2:1011353/1‑93 (MQ=255) cAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 2:644613/1‑93 (MQ=255) aaaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt < 1:4021774/93‑1 (MQ=255) aaaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 1:3665878/1‑93 (MQ=255) aaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt < 1:2025517/93‑1 (MQ=255) aGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:579905/93‑1 (MQ=255) gCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 1:2590033/1‑93 (MQ=255) gCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 2:6025981/1‑93 (MQ=255) cccGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:428894/93‑1 (MQ=255) ccGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:6126204/1‑93 (MQ=255) ||| AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957471‑3957626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |