mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 42 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | = 643955 | 274 (0.820) | 79 (0.340) | 30/350 | 8.5 | 28.7% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | AP012306 | 644386 = | 201 (0.860) | intergenic (+1/‑432) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | AP012306 | 832093 = | 271 (0.810) | 10 (0.030) | 10/484 | 20.2 | 3.6% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/conserved protein |
| ? | AP012306 | 832135 = | 267 (0.830) | coding (14/1233 nt) | ycaQ | conserved protein | |||||
| * | ? | AP012306 | = 1902225 | 300 (0.900) | 10 (0.030) | 9/486 | 20.8 | 3.3% | intergenic (‑2061/+2478) | yfaQ/yfaT | predicted protein/predicted protein |
| ? | AP012306 | = 1902226 | 292 (0.900) | intergenic (‑2062/+2477) | yfaQ/yfaT | predicted protein/predicted protein | |||||
| * | ? | AP012306 | 3838727 = | 312 (0.930) | 8 (0.020) | 8/482 | 21.4 | 2.7% | coding (351/732 nt) | rlmB | 23S rRNA (Gm2251)‑methyltransferase |
| ? | AP012306 | 3838810 = | 270 (0.840) | coding (434/732 nt) | rlmB | 23S rRNA (Gm2251)‑methyltransferase | |||||
| * | ? | AP012306 | = 3738727 | 339 (1.010) | 9 (0.030) | 8/486 | 21.5 | 2.6% | coding (1356/1533 nt) | alsA | fused D‑allose transporter subunits |
| ? | AP012306 | = 3738751 | 336 (1.040) | coding (1332/1533 nt) | alsA | fused D‑allose transporter subunits | |||||
| * | ? | AP012306 | 1798113 = | 333 (1.000) | 8 (0.020) | 8/490 | 21.6 | 2.4% | coding (905/933 nt) | pbpG | D‑alanyl‑D‑alanine endopeptidase |
| ? | AP012306 | 1798130 = | 316 (0.970) | coding (888/933 nt) | pbpG | D‑alanyl‑D‑alanine endopeptidase | |||||
| * | ? | AP012306 | 1943896 = | 333 (1.000) | 8 (0.030) | 7/476 | 21.9 | 2.4% | coding (10/267 nt) | pmrD | polymyxin resistance protein B |
| ? | AP012306 | 1943987 = | 344 (1.090) | intergenic (‑82/+28) | pmrD/menE | polymyxin resistance protein B/o‑succinylbenzoate‑CoA ligase | |||||
| * | ? | AP012306 | = 2251521 | 415 (1.240) | 7 (0.020) | 7/484 | 22.1 | 1.8% | coding (1231/1800 nt) | lepA | GTP binding membrane protein |
| ? | AP012306 | = 2251574 | 370 (1.150) | coding (1178/1800 nt) | lepA | GTP binding membrane protein | |||||
| * | ? | AP012306 | = 2192910 | 279 (0.840) | 7 (0.020) | 7/484 | 22.1 | 2.5% | coding (43/2313 nt) | pbpC | fused transglycosylase/transpeptidase |
| ? | AP012306 | = 2192922 | 277 (0.860) | coding (31/2313 nt) | pbpC | fused transglycosylase/transpeptidase | |||||
| * | ? | AP012306 | = 1626180 | 240 (0.720) | 8 (0.020) | 7/486 | 22.1 | 3.3% | intergenic (‑58/‑217) | ruvA/yebB | component of RuvABC resolvasome, regulatory subunit/predicted protein |
| ? | AP012306 | = 1626182 | 239 (0.740) | intergenic (‑60/‑215) | ruvA/yebB | component of RuvABC resolvasome, regulatory subunit/predicted protein | |||||