New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | BA000036 | 1 = | 0 (0.000) | 83 (0.470) | 68/496 | 6.9 | 100% | coding (1/1575 nt) | Cgl0001 | ATPase involved in DNA replication initiation |
? | BA000036 | = 3309401 | 0 (0.000) | intergenic (‑653/–) | Cgl3099/– | Ribosomal protein L34/– | |||||
Rejected: Coverage evenness skew score above cutoff. |
‑‑‑‑‑GTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCATG > BA000036/1‑249 | acatagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTgc > 2:34/6‑249 (MQ=255) catagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGACGATCTCACAACTTTGAGACAGCAAGCGGACAGTGGCTTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGACTACGCCGTGCTGTCCACCCTCAACCCGATGGCAAAAAATGACGTTGACAACGGTTTGGACCATGCTTTGACCCGTGTGTTGTCGCTgcg > 2:135/5‑249 (MQ=255) gTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCATg < 2:1179909/249‑1 (MQ=255) | ‑‑‑‑‑GTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCATG > BA000036/1‑249 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |