New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BA000036	1 =	0 (0.000)	73 (0.490)	62/496	5.1	100%	coding (1/1575 nt)	Cgl0001	ATPase involved in DNA replication initiation
	?	BA000036	= 3309401	0 (0.000)					intergenic (‑653/–)	Cgl3099/–	Ribosomal protein L34/–
Rejected: Coverage evenness skew score above cutoff.

TCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATA‑‑‑‑‑‑‑‑‑‑‑‑  >  BA000036/3309154‑3309401                                                                                                                                                                                                                                                        |             tCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATag             <  1:994091/249‑2 (MQ=255) tCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATag             <  2:994090/249‑2 (MQ=255)        gTAGTGCGCTATCCTGTGGATAAACGTTTTGGGGTAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGATATTCGATGTGAATCGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGTGGCATTTTGCCATGCATTTTAGCTTCTCCGCCACGCCTCATCCACGGCTGAATAAAATTATTTATCGATAGTTTCGCCACAGGTAGGTACCTAACATagcaagccn      >  2:994092/1‑241 (MQ=255)         tAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccnn     >  1:994093/1‑240 (MQ=255)         tAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAAGTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccag     >  2:994094/1‑240 (MQ=255)           gTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccagaa   <  1:994095/249‑12 (MQ=255)            tGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccagaac  >  1:994097/1‑237 (MQ=255)            tGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTAGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccagaac  <  1:994096/249‑13 (MQ=255)                                                                                                                                                                                                                                                        |             TCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATA‑‑‑‑‑‑‑‑‑‑‑‑  >  BA000036/3309154‑3309401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.