New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BA000036	1 =	0 (0.000)	102 (0.510)	85/496	5.0	100%	coding (1/1575 nt)	Cgl0001	ATPase involved in DNA replication initiation
	?	BA000036	= 3309401	0 (0.000)					intergenic (‑653/–)	Cgl3099/–	Ribosomal protein L34/–
Rejected: Coverage evenness skew score above cutoff.

‑‑‑‑‑GTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCAT  >  BA000036/1‑248      |                                                                                                                                                                                                                                                        acatagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTgc      >  2:13/6‑249 (MQ=255)  catagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTgcg     >  1:118/5‑249 (MQ=255)     agTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTGACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCAt  <  1:1262816/248‑1 (MQ=255)     agTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCAt  <  1:1262861/248‑1 (MQ=255)      |                                                                                                                                                                                                                                                        ‑‑‑‑‑GTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCAT  >  BA000036/1‑248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.