| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,855,625 | +C | intergenic (+116/‑50) | sppA → / → ansA | signal peptide peptidase SppA/asparaginase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,855,621 | 1 | . | C | 97.8% | 1891.0 / 29.0 | 554 | intergenic (+112/‑54) | sppA/ansA | signal peptide peptidase SppA/asparaginase |
| Reads supporting (aligned to +/- strand): ref base . (1/11); new base C (208/334); total (209/345) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.61e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 586 total aligned reads displayed.
TTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑T‑CC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTG > NZ_CP025268/1855482‑1855755 | tGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACAATATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑T‑c > 2:597538/1‑140 (MQ=255) cagACCTGCGCCAACCTGCGTTAAGTCTTGGACTGAGTGGCCGACAGCTCGTCGGCCACATGATATATTACGGCGACGAATCCACTTCCCCCTGTTTCGCCCCATAGTTCCTTCTCCGCATAGTATCAGGTGCGC‑T‑cc‑cc < 2:196059/138‑1 (MQ=255) cTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑T‑cc‑cc < 2:3218683/140‑1 (MQ=255) cTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑T‑cc‑cc < 1:5101023/140‑1 (MQ=255) gACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTTGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCTCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑T‑cc‑ccct < 2:233087/140‑3 (MQ=255) gACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCCTAGTATCAGGTGCGC‑T‑cc‑cccg > 2:8174733/1‑138 (MQ=255) gACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑T‑cc‑ccct > 1:5929718/1‑138 (MQ=255) ccagcgcCAACATGCGATAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCGTCCCGCTGTTTCGCCCCATATTTACTTATCCGCATAGGATCAGGTGCGC‑T‑cc‑ccctgc < 2:4069148/137‑5 (MQ=255) tGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCt < 1:1030052/140‑1 (MQ=255) tGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCt < 1:8318501/140‑1 (MQ=255) tGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCt < 1:5166496/140‑1 (MQ=255) tGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCt < 1:4415004/140‑1 (MQ=255) tGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCt < 1:1461371/140‑1 (MQ=255) tGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTAGACTAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCt < 2:8979018/140‑1 (MQ=255) tGCGCCAACATGCGTTAAGTCGTGTACTGAGTGGCCGACAGATCGTCGGCCACATTCTTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCt < 1:4086255/140‑1 (MQ=255) gcgcCAACATGCGTGAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTc < 1:7813146/140‑1 (MQ=255) cgcCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCa > 1:8775364/1‑140 (MQ=255) gcCAACATGCGTTAAGTCTTGTACTGAGTGGCCGAAAGATCGTCGGACACATTATTTTTTACGACGCCGACTCCACTTCCCCCATTTTCGCCCCATATTTCCTTATCCCCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCAc < 2:2588920/140‑1 (MQ=255) aCATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGtat > 1:8853194/1‑140 (MQ=255) cATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGCATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGtata < 1:2438181/140‑1 (MQ=255) cATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGtata < 1:5732761/140‑1 (MQ=255) cGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACt > 1:3591083/1‑140 (MQ=255) aaGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATCTTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTTTATACTTTTg < 2:3751038/140‑1 (MQ=255) aaGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCGTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTg < 1:1895645/140‑1 (MQ=255) gTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGct > 2:1149727/1‑140 (MQ=255) tCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCGGCCTCACGTATATACTTTTGctc > 1:7958720/1‑140 (MQ=255) tGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCttt < 2:2940703/140‑1 (MQ=255) tGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCttt < 1:8530618/140‑1 (MQ=255) gTACTGAGTGGCCGACAGATCGTCGGCCACATTTTTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTAGCCCCCAATTTCCTTATCCGCATATTATAATGTGCGA‑T‑CCACCTGCCTAACGTATATACTTTTGCTCTTTc > 2:6722304/1‑140 (MQ=255) gTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTc > 1:4778406/1‑140 (MQ=255) cTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGat < 2:8494336/140‑1 (MQ=255) tGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGata < 2:8260175/140‑1 (MQ=255) tGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGata < 1:3962322/140‑1 (MQ=255) tGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGata < 2:7281272/140‑1 (MQ=255) tGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTAGATACTTTTGCTCTTTCGata < 2:3589440/140‑1 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 2:27739/1‑140 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 1:6416082/1‑140 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 1:3094293/1‑140 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 1:2199978/1‑140 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 2:7807645/1‑140 (MQ=255) aGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGGATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtc > 2:5232002/1‑140 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:3094293/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:649945/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:4227218/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:8922453/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATGGCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:2225522/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAAGCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 2:1738516/140‑1 (MQ=255) ggCCGACAGATCGTCGGCCACATTATTTATTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcatt < 1:998200/140‑1 (MQ=255) ccGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcattca > 1:2731891/1‑140 (MQ=255) ccGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATAtcattca > 1:3745641/1‑140 (MQ=255) aTCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCt < 1:1143893/99‑1 (MQ=255) aTCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCatatcaat > 2:4386690/1‑140 (MQ=255) cgtcgGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGtata > 2:1705258/1‑105 (MQ=255) cgtcgGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGtata < 1:1705258/105‑1 (MQ=255) ccACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCa < 1:6997734/140‑1 (MQ=255) acaTTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCTCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTCTATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCaaa > 2:9469030/1‑140 (MQ=255) aCGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAAttt > 1:2840001/1‑140 (MQ=255) tCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACg < 2:1556052/140‑1 (MQ=255) tCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACg < 1:7521997/140‑1 (MQ=255) gacgaATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGtt < 2:396901/140‑1 (MQ=255) gacgaATCCTCGTCCAGCTGTTTCGACGCATATTTCCTTATCCGCATAGTATCAGTGGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCTTTCATCTCAATATCATGCAAATGAAATCAATTTACGtt < 2:7140874/140‑1 (MQ=255) tCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTac < 2:7991663/140‑1 (MQ=255) tCCTCTTCCCGCTGTTTCGCCCCATATTTCCGTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTac < 1:7205653/140‑1 (MQ=255) cGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACAcgggcggg < 1:8958917/140‑1 (MQ=255) gCTGTTTCGCCCCATATGTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACCCGGGCGGGa < 2:204345/140‑1 (MQ=255) gTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCa > 2:5704461/1‑140 (MQ=255) gTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCa < 1:3387208/140‑1 (MQ=255) gCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACATTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCggg < 2:5870324/140‑1 (MQ=255) gCCCCATATTTCCTTATCCGCATAGTAACAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCggg > 2:5471097/1‑140 (MQ=255) gCCCCATATTTCCTTATCCGCATAGGATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCggg < 1:4911341/140‑1 (MQ=255) cATATTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCAGCGGGATGc > 1:4541850/1‑140 (MQ=255) atatTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCa < 2:5561341/140‑1 (MQ=255) tatTTCCTTATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAg > 1:6118930/1‑140 (MQ=255) ttATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCg < 1:864955/140‑1 (MQ=255) tATCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGa > 2:9202398/1‑140 (MQ=255) ctCCGCACACTATCAGGTGCGC‑TCCC‑CCTGCCACACGTAGATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGACTACACGGTCGGGACCATCGGGATGCAGAGTTCCGAg < 2:6961300/139‑1 (MQ=255) aTCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAg < 2:8723400/140‑1 (MQ=255) aTCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAg < 2:4192890/140‑1 (MQ=255) aTCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAg < 1:9368040/140‑1 (MQ=255) tCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGc > 2:1288842/1‑140 (MQ=255) tCCGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGc > 2:4166367/1‑140 (MQ=255) ccGCATAGTATCAGGTGCGCGC‑CC‑CCTGCCTCACGGAGATACTTTTGCTCTGTCGATATCTTTCATATCAATATCATGCAAAAGAAATCAATTTACGTGGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCa < 2:4552594/140‑1 (MQ=255) ccGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCa < 1:1358518/140‑1 (MQ=255) ccGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCa < 1:7380725/140‑1 (MQ=255) ccGCATAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCa < 2:7572895/140‑1 (MQ=255) aTAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCCTTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGt > 1:2955843/1‑140 (MQ=255) aTAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGt > 2:7404539/1‑140 (MQ=255) aTAGTATCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTAGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGt > 2:4856658/1‑140 (MQ=255) ctATCAGGTGCGC‑TCCC‑CCTGCCTCACCTATATACTTTTGCACTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTtat < 1:6310521/139‑1 (MQ=255) aTCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCCTATCAATATCAGGCACATGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTtatat > 1:1733252/1‑140 (MQ=255) tCAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATCTCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCCTCGGGATGCAGCGGTCCGAGCAGGGTtttata > 1:9223898/1‑140 (MQ=255) cAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATAc < 2:364790/140‑1 (MQ=255) cAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATAc < 1:684799/140‑1 (MQ=255) cAGGTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATAc > 1:4988923/1‑140 (MQ=255) ggTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCg > 1:5423042/1‑140 (MQ=255) ggTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCg > 2:2191769/1‑140 (MQ=255) ggTGCGC‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAANATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCg > 1:5595596/1‑140 (MQ=255) gcgc‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGgtg > 2:6316044/1‑140 (MQ=255) gcgc‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGgtg > 2:6087947/1‑140 (MQ=255) gcgc‑TCCC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGgtg > 1:5358589/1‑140 (MQ=255) | TTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGC‑T‑CC‑CCTGCCTCACGTATATACTTTTGCTCTTTCGATATCATTCATATCAATATCATGCAAAAGAAATCAATTTACGTTGCCTACACGGGCGGGACCATCGGGATGCAGCGTTCCGAGCAGGGTTATATACCGGTG > NZ_CP025268/1855482‑1855755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |