| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,879,869 | (C)5→6 | pseudogene (521/821 nt) | nimR ← | DNA‑binding transcriptional regulator NimR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,879,864 | 1 | . | C | 97.2% | 1596.5 / 33.1 | 475 | pseudogene (526/821 nt) | nimR | DNA‑binding transcriptional regulator NimR |
| Reads supporting (aligned to +/- strand): ref base . (8/5); new base C (228/231); total (238/237) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 538 total aligned reads displayed.
GCCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGG > NZ_CP025268/1879725‑1879997 | ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAATAAGCCAGCCCATTGCCCCAATG‑c > 2:3141155/1‑140 (MQ=255) ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 2:932756/1‑140 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cc < 1:1375188/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cc < 1:7206370/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cc < 1:9275123/140‑1 (MQ=255) tacACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccc > 2:8518991/3‑140 (MQ=255) cACTAATCCCTGAAGTGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccccc > 1:4803637/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTCTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccccc > 2:3430744/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccccc > 2:1946351/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccccc > 2:5778708/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑cccccc > 2:5221528/1‑139 (MQ=255) aTCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCg > 2:1645040/1‑140 (MQ=255) tCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGa > 2:1107666/1‑140 (MQ=255) cccTGAAGCGCCATAATCAGCTGTAACTGCGGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGAc < 1:3247910/140‑1 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAgg > 1:7360120/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAgg > 1:5907912/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAgg > 2:6574814/1‑140 (MQ=255) gAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGc > 2:197645/1‑140 (MQ=255) aaGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGcc < 2:752334/140‑1 (MQ=255) cgcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCtt > 2:8962554/1‑140 (MQ=255) gcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCttt < 2:5496504/140‑1 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTc > 1:5683343/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTc > 2:470935/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTc > 1:1695166/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTc > 1:1969460/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTc > 2:4217888/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTc > 2:7329850/1‑140 (MQ=255) tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAACAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGcc < 2:7749094/140‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCca < 1:8220093/140‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCca < 1:5817016/140‑1 (MQ=255) tCAGCTGTCACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACGATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑CCTCGACAGGCCCTTTCGCcatc < 2:2931984/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCCACCCCGTCTCTTGTACTATCAGTCGGGCAAGAGTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCcatc < 1:6612667/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCcatc < 2:8182425/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCcatc < 2:8818500/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCcatc < 1:4608486/140‑1 (MQ=255) aGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCcatcat < 2:4102139/140‑1 (MQ=255) cTGTACCAGCAGACGCCACTGGCGAACACCCACCCCCGGCTCTTTTACTATCAGTCTGGCAAGCTTGCGTTCTCTCATCGCTACAAAGCCAGCCCATTGCCCCATTG‑CCCCCGACTCGACAGGCCCTTTCGCCATCAtct < 2:8755158/140‑1 (MQ=255) cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCAtct > 1:3063479/1‑140 (MQ=255) cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCAtct > 2:3866138/1‑140 (MQ=255) tAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTcca > 1:2132019/1‑140 (MQ=255) aCTGCTGACGCCACTGGCGAAAACACAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCATAAATGCCAGCCCATTGCCCCAATGCCCCCC‑AATCGACAGGCCCTGTCGCCAGCTTCTccaca > 1:9189010/1‑139 (MQ=255) gctgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTACGCCATCATCTCCACCATc > 2:6035319/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 1:3936704/1‑140 (MQ=255) gCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCgg < 1:1029984/140‑1 (MQ=255) aCTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtt < 2:2701778/140‑1 (MQ=255) aCTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtt > 1:808409/1‑140 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt > 1:5127838/1‑140 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt > 1:5051877/1‑140 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt > 2:5451194/1‑140 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAttgt > 2:4995654/1‑138 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtgtt > 1:6164661/1‑140 (MQ=255) cGACAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 1:9498058/140‑1 (MQ=255) cGAAAACTCCCCCCCGTCTCTTGTACTCTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 1:8342373/140‑1 (MQ=255) aCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATgag < 1:2875686/140‑1 (MQ=255) aaCCCCGTCTCTTTTACTCTCAGTCGGGCAAGATTGCGTTCACTCATCGCCAAACAGCCAGCCCATTGCCCCAAGGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGTATGagaaga < 2:1505948/140‑1 (MQ=255) aaCCCCGTCTCTTTTACTAACAGTCGGGCAAGATAGCGTTCACACATAGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACAAACGTGCGGATTTTATGATGagaaga < 2:6335282/140‑1 (MQ=255) cGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACgg > 1:7437815/1‑140 (MQ=255) gTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCCTCGTGCGGATTTTAGGATGAGAAGAAACggg < 1:5485756/140‑1 (MQ=255) gTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACggg < 1:3721135/140‑1 (MQ=255) gTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACggg > 1:1496020/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:2174263/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc > 2:6726441/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 1:3386911/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGAGGAGAAGAAACGGGc > 2:253896/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGGGCGGATTATAGGCTGAGAAGAAACGGGc > 2:9204396/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTGTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 1:2254421/140‑1 (MQ=255) tctcTTGTACTCTCAGTCGGGCAAGATTGCGTTCACACATCGCAAAAAAGCCAGCCCAGTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 2:8081376/140‑1 (MQ=255) ctctTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCa > 1:52165/1‑140 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc < 2:4394800/140‑1 (MQ=255) aCTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAg < 1:6241397/140‑1 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCAtctc > 2:8623124/1‑91 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgt > 1:2486540/1‑140 (MQ=255) tCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCACAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAGTTTAGGATGAGAAGAAACGGGCCGGTGCAGCtgt > 1:533572/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAATGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:8008561/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 2:3550579/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:4352071/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:1785845/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTGTAGGATGTGAAGAAACGGGCCGGTGCAGCtgtgg > 1:4468948/1‑138 (MQ=255) tCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgtt > 2:449474/1‑140 (MQ=255) ggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTtgtg < 1:9367932/140‑1 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 1:412667/140‑1 (MQ=255) tagccttCACTCATCGCTAAAACGCCAGCCCGTGGCCCCTATGCCCCCC‑CCGCGACAGGCCCTTTCGCAAACCTCTCCACCATAGTGCGGAGTTTAGGATGAGAAGAAACTGGCAGGTGCAGCTGTTGTTGTTGctgctg < 2:7025714/135‑1 (MQ=255) cGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAgg > 1:8630683/1‑140 (MQ=255) gTTCACTCATCGCAAAATAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAGTGTAGGATGAGAAGTGACGGGCAGGTGGAGCTGTTGTTGTGGCGGCTGAggg > 2:6116574/1‑140 (MQ=255) tgcACTCAGCGCAAAAATGCCAGCCCAGTGCCCCAATGCCCCCC‑ACTCGACTGGCCCTTGCGCCTTCATCGCCCCCTGCGTGGGGATTTTAGGATGAGACGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa < 2:3631501/138‑1 (MQ=255) tCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAg < 2:1348925/140‑1 (MQ=255) cACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGt < 1:1171485/140‑1 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGAGAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 2:8302669/140‑1 (MQ=255) aaaaaaGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACa < 2:3263070/140‑1 (MQ=255) aaaaaaGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACa < 1:7669576/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:8950280/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:1582702/140‑1 (MQ=255) ccagccCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTg > 1:8480213/1‑140 (MQ=255) ccagccCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTg > 1:7594543/1‑140 (MQ=255) cagccCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGa > 1:6441986/1‑140 (MQ=255) gccCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAAt > 1:2756583/1‑140 (MQ=255) gccCATTGCCCCAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAAt > 1:7135564/1‑140 (MQ=255) ccccAATGCCCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc < 1:66832/140‑1 (MQ=255) ccccAATGCCCCCC‑ACTCGACAGGCCCTTACGCCATCCTCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc < 1:3585065/140‑1 (MQ=255) ccccAAGGCCCCCC‑ACTCGCCAGGCCCTGTCGCCATCATCTCCACCCTCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCCTCAAACAGGACCTGAATTAAACTGc < 2:7816338/140‑1 (MQ=255) | GCCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CCCCC‑ACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGG > NZ_CP025268/1879725‑1879997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |