BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,001	A→G	noncoding (36/132 nt)	CXP41_RS06835 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,001	0	A	G	100.0%	698.1 / NA	255	noncoding (36/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (98/157); total (98/157)

Only 100 of 255 total aligned reads displayed.

TGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCG  >  NZ_CP025268/1292866‑1293133

tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                  <  1:6951718/140‑1 (MQ=255)

tGCGGATTCGCTTGAGATTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGa                                                                                                                                  <  1:5765179/140‑1 (MQ=14)

tGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGAGGGAAGGATTAATCTTCGCTTCGCGCATCGCCCTTCGGGACGTTGCCTGGGGCAACGGTCTCTCGCTGTCGCTCGAATCGAACCTTAGTCGa                                                                                                                                  >  1:5362553/1‑140 (MQ=11)

 gctgATTCGTTTGAGAATTCCGGTGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                 <  2:313787/137‑1 (MQ=255)

  cGGATTCGTTTGAGAATTCCGGGGCTTTTGTATGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGAGGCAACGCTCTCTCGCTGACGCTCGAGCCGATGCTTAGTAGAAg                                                                                                                                >  2:3234226/1‑140 (MQ=14)

  cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCACACTCGCAGCCCCTCGAGCCGAACCTTAGTCCAAg                                                                                                                                >  1:4102874/1‑140 (MQ=14)

  cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGCCGAACATTAGTCGAAg                                                                                                                                >  2:7211354/1‑140 (MQ=255)

  cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                                                <  2:26769/140‑1 (MQ=255)

  cGGATTCGTTTGAGAATTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGGCGAACCTTTGTCGAAg                                                                                                                                >  2:8054510/1‑140 (MQ=11)

       gcgtttGAGAATTCCGGGCCTTTTGCAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCGtct                                                                                                                           <  2:6849945/136‑1 (MQ=14)

          tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                        <  1:4387862/139‑1 (MQ=255)

           ttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATc                                                                                                                       <  1:3734761/140‑1 (MQ=255)

            tGAGAATTCCGGGGCTTTTGAAAGTGATGGCGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATcc                                                                                                                      <  2:2940327/140‑1 (MQ=255)

               gtaTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                   <  2:4954733/138‑1 (MQ=255)

                   tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                  >  2:8976995/1‑121 (MQ=38)

                   tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                  >  2:6431579/1‑121 (MQ=38)

                   tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                  <  1:8976995/121‑1 (MQ=38)

                    tcttttcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                              <  2:5209190/134‑1 (MQ=12)

                      ggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGAGTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                                            <  1:6140405/140‑1 (MQ=21)

                         gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  1:7771615/140‑1 (MQ=18)

                         gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  2:3683873/140‑1 (MQ=18)

                         gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  2:1466472/140‑1 (MQ=18)

                         gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  2:2078813/140‑1 (MQ=18)

                         gCTTATGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  2:7530533/140‑1 (MQ=16)

                           ttttGACAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  1:1423148/140‑1 (MQ=17)

                           ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  1:8588815/140‑1 (MQ=17)

                           ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  1:9458802/140‑1 (MQ=17)

                                     gATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAtttga                                                                                             <  1:684430/140‑3 (MQ=11)

                                       tggtggtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCa                                                                                                                         >  1:8290121/1‑110 (MQ=17)

                                                    aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGGTTCTCATCCTTCCCCGCTTGGGCAGAAGATTTAAAAGCGGATACGTTgt                                                                              >  2:6209054/1‑139 (MQ=11)

                                                    aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTgg                                                                              >  2:8661050/1‑140 (MQ=255)

                                                     ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                                             <  1:5193347/140‑1 (MQ=255)

                                                      gATTACTCAGCTCTGCGAGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                            <  2:1052505/140‑1 (MQ=11)

                                                      gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                            <  2:1772880/140‑1 (MQ=255)

                                                      gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                            <  1:3363459/140‑1 (MQ=255)

                                                      gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                            <  1:8054510/140‑1 (MQ=255)

                                                       aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGACGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGaa                                                                           <  1:6429818/140‑1 (MQ=255)

                                                       aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGaa                                                                           <  1:8865647/140‑1 (MQ=11)

                                                       aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCACCGCATGGGCAGAATATTTAATTGCGGATTCTTTGGGaa                                                                           >  2:7057853/1‑140 (MQ=11)

                                                               gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCTAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                                   <  1:1680349/140‑1 (MQ=14)

                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGCAACGCTCTCTCGCTGGCGCGCGGGTCGAACCGTGGTGGTAGCGTCTCATCCTTACCCGCAGGGGCAGGATATTTAATTGGGGGTTGGGTGGGGAGttgcgggg                                                                  >  1:6623236/1‑134 (MQ=2)

                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCATGGGCCGAATATTAAATTTCGGATTCGATGGGAATTTCAGGGa                                                                  >  2:7268931/1‑140 (MQ=11)

                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAt                                                                                                                        >  2:1648228/1‑86 (MQ=11)

                                                                cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGACGCGCGAGCCGAACCGTAGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCCGAATATTTGATTGCGGATTCGGTGGGGAGTTCAGGGa                                                                  >  1:4164438/1‑140 (MQ=11)

                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGCATAATTAATTGCGGAGTCGTTGGGCAGTTCAGGGACtttt                                                             >  2:232958/1‑140 (MQ=11)

                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTGAATGGCGGTTTCGGTGGGAAGTTCAGGGACgttg                                                             >  2:3595274/1‑139 (MQ=11)

                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                             >  2:6597003/1‑140 (MQ=255)

                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGTAGCTTCTCATCCTTCCCCGCTTGGGCAGAATTTTTTATTGCGGATTGGTTTGGAAGTTCAGGGTCtttg                                                             >  2:1354396/1‑139 (MQ=11)

                                                                     cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGGCGCTCAAGTCGAACCGTGGTCGAAGCTTCTAATCCATCCCCGCATGGGCAGAATATTTAATTGGGGATTCGTTGGGGAGTTAAGGGGCgttt                                                             >  1:9341425/1‑140 (MQ=11)

                                                                      gcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTg                                                            <  1:5819221/140‑1 (MQ=14)

                                                                        gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                          <  2:6760942/140‑1 (MQ=14)

                                                                        gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                          <  1:7211354/140‑1 (MQ=255)

                                                                         cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                                         <  2:6511296/140‑1 (MQ=255)

                                                                          ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAg                                                        <  2:4164438/140‑1 (MQ=255)

                                                                          ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCGTCTCATCCTTCCCCGCATGGGCAGAATATTTCAGTGAGGATTCGTTGGGACGTTCAGGGACGTGTGAAAg                                                        >  2:7932649/1‑140 (MQ=11)

                                                                          ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCATCCCCGCAAGGGCAGAAGATTTAATTGCGGCTTCGGTGGGAAGTTCAGGGACTTTTGAAAg                                                        >  2:4745877/1‑140 (MQ=14)

                                                                             gaccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCGAGTCGATCCTTGGTCGAAGCTTATCATCCTTCCCCGCATGGGCAGATTATTTAATTGCGGATTCGTTTGGAAGTTCAGGGACTTTTGAAAGTGa                                                     <  2:9388425/138‑1 (MQ=11)

                                                                             gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCTCTGGCGCTCGAGTCGTACATTGGTCGATGCTTCTCATCCTTCCCCGCTTGGGCAGAATTTTTAATTTCGGATTCGTTGGTTAGTTCAGGGACTTTTGAAAGTGA                                                     <  2:8556898‑M1/140‑1 (MQ=255)

                                                                             gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                                     <  1:8735249‑M1/140‑1 (MQ=255)

                                                                             gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                                     <  1:3180044‑M1/140‑1 (MQ=255)

                                                                             gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCATGTGCAGAATATTTAATTGCGGATTCGTTGGGTATTTCAGGGACTTTTGAAAGTGA                                                     <  2:8901192‑M1/140‑1 (MQ=255)

                                                                              cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT                                                    <  2:5621276‑M1/140‑1 (MQ=255)

                                                                               ccgtCGGGTCGTTGCCTGCGTCTTCGCTCTCTCTCTGGCGATCTAGTCGAACCGTGGTCGTAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTTATTTCGGATTCGTTTGGAAGTTCTGGGAATTTTGTAAGTGAtg                                                   <  2:5926603/137‑1 (MQ=2)

                                                                               ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                                   <  1:8544569‑M1/140‑1 (MQ=255)

                                                                               ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                                   <  2:4884362‑M1/140‑1 (MQ=255)

                                                                                  tCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCGTCTCATCCTTCCCCGCAGGGGCCGACTATTTAATTGCGGAGTCGGTGGGAAGGTCAGGGACGTTTGACAGTGAggggg                                                >  2:5402327/1‑138 (MQ=11)

                                                                                          ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                        <  1:4720829‑M1/140‑1 (MQ=255)

                                                                                          gtgCCGGCGGCAACGCTCTCTCGCGGGCGCTCGAGTCGAACCTTGGTCGAAGCGTCTCATCCTTCCCCGCCTGGGCAGAATTTTTAATTGCGGAGTCGTTGGGAATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                        <  2:8833925‑M1/139‑1 (MQ=255)

                                                                                               tGCGGCAACGCTCTCTCGCTTGCGCTCGAGTCGAACCTTTGTCGAAGCTTCTCAACCTTCCCCGAATGGGCAGAAAATTTAATTGCGGAATCGTTGGTACGTAAACGGACTTTTGTAAGAGAGTGTGGAGGGGGAAGGag                                   >  2:1536941/1‑139 (MQ=2)

                                                                                                   gCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga                               <  2:9145485‑M1/140‑4 (MQ=255)

                                                                                                   gCAACGCACACTCGCTGCCGCACGAGACGAACCTTGGTCGAAGCTTCTCATCCTACCCCTCATTGCAAGAATTTTTATTTGCGTTTTATTTTGTCAGTTCTTGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAttcga                               <  2:7114454/140‑4 (MQ=0)

                                                                                                       cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaacct                           >  1:7330712‑M1/1‑133 (MQ=255)

                                                                                                         ctctctCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttc                         >  1:4294583‑M1/1‑131 (MQ=255)

                                                                                                         ctctctCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttc                         >  1:2579102‑M1/1‑131 (MQ=255)

                                                                                                           ctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACGTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcga                       >  2:925104‑M1/1‑129 (MQ=255)

                                                                                                            tctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                          <  1:9284523/104‑1 (MQ=14)

                                                                                                                gCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                        <  1:7543620‑M1/118‑1 (MQ=255)

                                                                                                                gCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                        >  2:7543620‑M1/1‑118 (MQ=255)

                                                                                                                   ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatg               >  2:3005205‑M1/3‑121 (MQ=255)

                                                                                                                   ggcgcTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACATTTGAAAGTGATGGTGGGGGGGGAAGGATTcgaaccttcgaagtcgatg               >  1:6561452‑M1/3‑121 (MQ=255)

                                                                                                                   gACGCTCGCGCCGAACGTTTGTGGTAGCTTCTGATCCGTCCCCGCATGGGCATACTACTTTATTGCGGAGTCGCTAGAGAGTTCAGGTACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTc               <  1:4883274/140‑1 (MQ=2)

                                                                                                                    aCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTGGAGAGTTCAGGGACTGTGGATTGTGATGGTGGTGGGGGTCGGATTACTCAGCGCTGCGCGCTTCg              >  2:6221011/1‑140 (MQ=11)

                                                                                                                     cGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac             <  1:1354343‑M1/140‑22 (MQ=255)

                                                                                                                     cGCTCGAGTCGCACCGTGGGCGACGCTTCTCATCCGTCCCCGCAAGGGCAGAATAGTTAATTGCGGAGTCGATGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac             <  2:6052311‑M1/140‑22 (MQ=255)

                                                                                                                     cGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac             <  2:3891437‑M1/140‑22 (MQ=255)

                                                                                                                      gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGACAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacg            >  1:1753590‑M1/1‑118 (MQ=255)

                                                                                                                      gCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTGAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTTAAAGTGATGGTGGTGGGGGAAGGTTTcgaaccttcgaagtcgatgacg            >  1:5103007‑M1/1‑118 (MQ=255)

                                                                                                                       cTCGAGTCGAACCTTTGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg           <  1:1037520‑M1/140‑24 (MQ=255)

                                                                                                                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGTAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg           <  1:8934771‑M1/140‑24 (MQ=255)

                                                                                                                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg           <  1:917088‑M1/140‑24 (MQ=255)

                                                                                                                       cTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg           <  1:5402327‑M1/140‑24 (MQ=255)

                                                                                                                       cTCGAGACGACCCTTGGTCTACGCTTCTCATCGTTCCCCGCATGGGCATAATATTTAATTGCGGATTCGTTGGTCAGTTCAGGGCCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacgg           <  1:7966566‑M1/140‑24 (MQ=255)

                                                                                                                        tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATAcgaaccttcgaagtcgatgacggc          >  2:4388213‑M1/1‑116 (MQ=255)

                                                                                                                        tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAGTTAATAGCGGGTTCGTTGGGAAGTTCAGGGTCTTTTGAATGTGATGTTGGGGGGGGAAGGATTcgcaccttcgaagtcgaggtcggc          >  1:2214674‑M1/1‑116 (MQ=255)

                                                                                                                         ctagtcgaaccTTGGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccatcgaagtcgatgacggca         <  1:2015427‑M1/135‑26 (MQ=255)

                                                                                                                         caagtcgaaccTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:4649145‑M1/135‑26 (MQ=255)

                                                                                                                         caagtcgaaccTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:2950818‑M1/135‑26 (MQ=255)

                                                                                                                         cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:3130937‑M1/140‑26 (MQ=255)

                                                                                                                         cGAGTCGAACCTTGGACGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:5869736‑M1/140‑26 (MQ=255)

                                                                                                                                aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac  <  2:5162238‑M1/140‑33 (MQ=255)

TGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCG  >  NZ_CP025268/1292866‑1293133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`