BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,534,757	A→G	pseudogene (2037/2037 nt)	CXP41_RS08125 →	RHS repeat protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,534,757	0	A	G	99.7%	1298.3 / NA	379	pseudogene (2037/2037 nt)	CXP41_RS08125	RHS repeat protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (59/319); minor base C (0/1); total (59/320)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 379 total aligned reads displayed.

GTGGCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAAAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGTTGAGATATATCTTTCTGAA  >  NZ_CP025268/1534621‑1534890

  ggCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAATAAAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGc                                                                                                                                   >  2:9023915/1‑140 (MQ=255)

  ggCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCa                                                                                                                                  >  2:4302741/1‑140 (MQ=255)

   gCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCaa                                                                                                                                 <  1:3266158/140‑1 (MQ=255)

             tGCCAAATTTAGAGATGAATGTATTGAAAAATATAACACTTGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCTAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCAtt                                                                                                                       <  2:7876435/140‑1 (MQ=255)

             tGCCAAATGTAGCGATTCATGTATTGAAAAATATAACACTGTGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCAtt                                                                                                                       <  2:8759594/140‑1 (MQ=255)

                 aaaTGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCAtttttt                                                                                                                   <  1:41541/140‑1 (MQ=255)

                    tGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTaa                                                                                                                <  1:4666150/140‑1 (MQ=255)

                     ggaGCGATGCATTAATATAAAAATATAACACCGGTCAACACTTCCGGTTAGAGTGTATAACAGCAGATAATCCTAT‑AAAAGCAAAGCAAGGGAGTTCTGATGCTTCAACTTAATAGACGCAAACTTGTCATTTTTTTAAt                                                                                                               <  2:7970777/138‑1 (MQ=255)

                     gaaGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGTTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAATGGAGTTCAGATGCTTAAAATTATTAGAGGCAAACTTGTCATTTTTTTAAt                                                                                                               <  2:9203823/138‑1 (MQ=255)

                     gTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAAt                                                                                                               <  1:8502544/140‑1 (MQ=255)

                     gTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAAt                                                                                                               <  2:4689862/140‑1 (MQ=255)

                     gTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAAt                                                                                                               <  1:6489501/140‑1 (MQ=255)

                     gTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAAt                                                                                                               <  2:7637861/140‑1 (MQ=255)

                      tAGCGATGCATGTATAGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAAtt                                                                                                              <  1:5717850/140‑1 (MQ=255)

                       aGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTa                                                                                                             <  2:3821813/140‑1 (MQ=255)

                           aTGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                         <  1:5428771/140‑1 (MQ=255)

                           aTGAATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAATCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTTTCATTTTTTTAATTACCCt                                                                                                         <  1:3596735/140‑1 (MQ=255)

                              cATGTATTGACAAATATACCACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AACAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTACTTACCCTTTg                                                                                                      <  2:4934147/140‑1 (MQ=255)

                              cATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                         <  2:483473/137‑1 (MQ=255)

                              cATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCt                                                                                                         >  1:483473/1‑137 (MQ=255)

                              cATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTg                                                                                                      <  2:2206902/140‑1 (MQ=255)

                              cATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTg                                                                                                      <  2:6516668/140‑1 (MQ=255)

                              cATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTg                                                                                                      >  1:9527804/1‑140 (MQ=255)

                              cATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTg                                                                                                      <  1:8025284/140‑1 (MQ=255)

                               aTGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGt                                                                                                     <  1:2521317/140‑1 (MQ=255)

                                 gTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGttt                                                                                                   >  2:6897627/1‑140 (MQ=255)

                                   aTTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTAt                                                                                                 <  1:7704132/140‑1 (MQ=255)

                                   aTTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATGAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTAt                                                                                                 <  2:1959443/140‑1 (MQ=255)

                                    ttGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTAtt                                                                                                <  2:3423270/140‑1 (MQ=255)

                                      gAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCACAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATttg                                                                                              <  2:1886242/140‑1 (MQ=255)

                                      gAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATttg                                                                                              >  1:4930143/1‑140 (MQ=255)

                                      gAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATttg                                                                                              <  1:4302741/140‑1 (MQ=255)

                                         aaaTATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATttgttg                                                                                           <  1:8803876/140‑1 (MQ=255)

                                          aaTATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AATATCAAAGCAAGGGAGTTCAGATGCATCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTtgttgt                                                                                          <  2:2817681/140‑1 (MQ=255)

                                           atatAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTgttgtt                                                                                         <  2:1107515/140‑1 (MQ=255)

                                           atatAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTgttgtt                                                                                         <  2:941073/140‑1 (MQ=255)

                                           atatAACACTGGCCAACTCTTCGGGTTAGATGGTATAACAGCAGAGAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTATTAATTACCCTTTGTTTATTTgttgtt                                                                                         <  2:7332529/140‑1 (MQ=255)

                                           agataACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAACTTATTAGAGGCAAACTTGTCATTTTTTTAAGTACCCTTTGTTTATTTgttgtt                                                                                         <  2:7016976/138‑1 (MQ=255)

                                               aaCACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTAcc                                                                                     <  2:4356986/140‑1 (MQ=255)

                                                  acTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTg                                                                                  <  1:9426678/140‑1 (MQ=255)

                                                    tGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTggg                                                                                <  2:6136928/140‑1 (MQ=255)

                                                      ggCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCGGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGtt                                                                              >  2:5599366/1‑140 (MQ=255)

                                                      ggCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTg                                                                                  >  2:6433120/1‑136 (MQ=255)

                                                      ggCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGtt                                                                              >  1:9116429/1‑140 (MQ=255)

                                                      ggCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGtt                                                                              >  2:841363/1‑140 (MQ=255)

                                                          aCTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAATCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGAt                                                                          <  2:258866/140‑1 (MQ=255)

                                                           ctctTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATa                                                                         <  2:8571351/140‑1 (MQ=255)

                                                            tctTCGGTTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAACCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATaa                                                                        <  2:8276527/140‑1 (MQ=255)

                                                            tctTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATaa                                                                        <  1:7834213/140‑1 (MQ=255)

                                                             ctTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAAc                                                                       <  1:7148767/140‑1 (MQ=255)

                                                             ctTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAAc                                                                       <  2:3302877/140‑1 (MQ=255)

                                                             ctTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAAc                                                                       <  1:1744950/140‑1 (MQ=255)

                                                                 gggTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAAtt                                                                   <  2:6798030/140‑1 (MQ=255)

                                                                   gTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCa                                                                 <  1:3120779/140‑1 (MQ=255)

                                                                      aGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAAt                                                              >  2:1308345/1‑140 (MQ=255)

                                                                       gATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAAtt                                                             <  2:1517436/140‑1 (MQ=255)

                                                                        ttgttataAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCATATGATTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTc                                                            <  1:1162455/136‑1 (MQ=255)

                                                                        aTGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTc                                                            <  1:147163/140‑1 (MQ=255)

                                                                          ggTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTg                                                          <  2:7736026/140‑1 (MQ=255)

                                                                            tataAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGAc                                                        >  1:1288442/1‑140 (MQ=255)

                                                                             ataAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACa                                                       <  2:5234038/140‑1 (MQ=255)

                                                                             ataAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACa                                                       <  2:2950557/140‑1 (MQ=255)

                                                                             ataAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACa                                                       <  2:9124826/140‑1 (MQ=255)

                                                                             ataAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACa                                                       >  1:3813518/1‑140 (MQ=255)

                                                                              taAAAGCAGATAATCCAAT‑ACAAGCAAAGCAAGGGACTTCAGAAGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACAt                                                      <  1:6274865/140‑1 (MQ=255)

                                                                              taAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACAt                                                      <  1:5176991/140‑1 (MQ=255)

                                                                              taAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTGGGGTTTGATAACAATTCAAATTCTGACAt                                                      <  1:4753920/140‑1 (MQ=255)

                                                                                      gATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAAtt                                                                   >  2:2372549/1‑119 (MQ=255)

                                                                                      gATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAAtt                                                                   <  1:2372549/119‑1 (MQ=255)

                                                                                      gATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTAtttt                                              >  1:5912209/1‑140 (MQ=255)

                                                                                      gATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTAtttt                                              >  1:4522550/1‑140 (MQ=255)

                                                                                      gATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTAtttt                                              >  1:7569320/1‑140 (MQ=255)

                                                                                        tAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTTTTTATTTGTTGTTTACCTTGGGTTTGATAAAAATTCAAATTCTGACATCGTATTTTAt                                            <  2:1745869/140‑1 (MQ=255)

                                                                                          aTCCAAT‑AACAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATgg                                          <  1:2745881/140‑1 (MQ=255)

                                                                                             cAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACa                                       <  1:1201197/140‑1 (MQ=255)

                                                                                               aT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATa                                     <  2:3648511/140‑1 (MQ=255)

                                                                                               aT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATa                                     <  1:4028293/140‑1 (MQ=255)

                                                                                                       caaagcaaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATATTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACAcc                              <  1:9194009/140‑1 (MQ=255)

                                                                                                       caaagcaaGGGACTTCAGATGCTACCAACTATGAGAGGCAAACTTGTCAATTTTTTAAGTACCCGTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACAcc                              <  1:8252691/140‑1 (MQ=255)

                                                                                                         aagcaaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCaa                            <  2:5912209/140‑1 (MQ=255)

                                                                                                          agcaaGTGAGTTCAGATGCTTCAAATTATTAGAGGCAACCTTTTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGAAATCGTATTTTATGGACAAAAAACACCaaa                           <  2:865450/140‑1 (MQ=255)

                                                                                                          agcaaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCaaa                           <  2:5037071/140‑1 (MQ=255)

                                                                                                          agcaaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCaaa                           <  1:5990069/140‑1 (MQ=255)

                                                                                                          agcaaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCaaa                           <  1:1911878/140‑1 (MQ=255)

                                                                                                             aaGGGAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAagag                        <  1:2594914/140‑1 (MQ=255)

                                                                                                               gggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCg                      <  1:6791997/140‑1 (MQ=255)

                                                                                                               gggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCg                      <  1:6112683/140‑1 (MQ=255)

                                                                                                               gggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCg                      <  2:7569320/140‑1 (MQ=255)

                                                                                                               gggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCg                      <  1:2117113/140‑1 (MQ=255)

                                                                                                               gggAGTTCAGATGCTTAAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCg                      <  2:8365753/140‑1 (MQ=255)

                                                                                                                ggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCgc                     <  1:6897627/140‑2 (MQ=255)

                                                                                                                ggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                     <  2:230724/140‑1 (MQ=255)

                                                                                                                ggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                     <  1:2293826/140‑1 (MQ=255)

                                                                                                                ggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                     <  1:8657173/140‑1 (MQ=255)

                                                                                                                ggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                     <  2:4071357/140‑1 (MQ=255)

                                                                                                                ggAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGt                     <  2:5412444/140‑1 (MQ=255)

                                                                                                                 gAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCTAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGtt                    <  2:3239366/140‑1 (MQ=255)

                                                                                                                 gAGTTCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGtt                    <  1:2824866/140‑1 (MQ=255)

                                                                                                                    ttCAGATGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGTTgag                 <  2:4522550/140‑1 (MQ=255)

                                                                                                                         aTGCTTCAAATTATTAGAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGtt                    <  2:65988/132‑1 (MQ=255)

GTGGCGATTTTTCTGCCAAATGTAGCGATGCATGTATTGAAAAATATAACACTGGGCAACTCTTCGGGTTAGATGGTATAAAAGCAGATAATCCAAT‑AAAAGCAAAGCAAGGGAGTTCAGATGCTTCAAATTATTAAAGGCAAACTTGTCATTTTTTTAATTACCCTTTGTTTATTTGTTGTTTACCTTGGGTTTGATAACAATTCAAATTCTGACATCGTATTTTATGGACATAAAACACCAAAGAGCGTTGAGATATATCTTTCTGAA  >  NZ_CP025268/1534621‑1534890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`