| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 7,926 | Δ1 bp | pseudogene (35/1432 nt) | yaaJ ← | sodium:alanine symporter family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 7,923 | 0 | A | . | 99.3% | 2101.1 / 3.3 | 445 | pseudogene (38/1432 nt) | yaaJ | sodium:alanine symporter family protein |
| Reads supporting (aligned to +/- strand): ref base A (0/3); new base . (150/291); total (150/295) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 509 total aligned reads displayed.
GTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCAAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCG > NZ_CP025268/7784‑8059 | gtgaaaCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACACCTCCGGTGCGAAAAGTGAACCAACACCCGGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCa < 2:1732190/137‑1 (MQ=255)gTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCa < 2:8958837/140‑1 (MQ=255)gTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAAATGCACAAATCCGGTGCGACAAGTGACCCAACAACCTGAGCCGAAGAGCAGGTAAATCATTACCGATCCCCa < 2:4149702/140‑1 (MQ=255) aaCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATAACCGATCCCCaaatg > 1:8799213/1‑138 (MQ=255) aCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagga < 2:6986929/140‑4 (MQ=255) aCCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCaaagga < 1:5381671/140‑4 (MQ=255) cGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCacaggacg < 1:424927/140‑8 (MQ=255) cGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACg < 1:6792955/140‑1 (MQ=255) gCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGc > 2:5011080/1‑140 (MQ=255) ccTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGTCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCAGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCt > 2:4863039/1‑140 (MQ=255) ccTGGCTGTGGATGAAGGCTATTTTTAAGAGTTTTGCCCTTCTGGAGGATGTAGCGAAACTGCACAATTCCGGTGCGACAAGTGAACCAACAACCTGCGCCGGAGAGCTGGTAAATCATTACCGATCCCC‑ATAGGACGCt > 2:1500370/1‑140 (MQ=255) ccTGGCTGGGGCTGAATGCTATTTTTAAGACTGTTGCCCAACTGGCGGATGTCGCGAAACTGCCCCAAGCCGGTGCGAAAGGTGAACCAACAACCTGGGGCGTCGCGCAGGTACATCATTACCGAGCCCC‑CAAGGACGcg > 2:5513743/1‑139 (MQ=255) ttgATGAATGCTATTTTTAAGACTTTTGCCAATCTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGa < 1:3192661/138‑1 (MQ=255) tgGATGAATGCTATTTTTAAGACTTTTGCAAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGa < 2:3961274/140‑1 (MQ=255) gATGAATGCTATTTTTAAGACTTTTGCCACACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCACCAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAg < 2:1350823/140‑1 (MQ=255) aTGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGaa > 1:2039231/1‑140 (MQ=255) tGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGaaa > 2:6838503/1‑140 (MQ=255) tAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgc < 2:8193669/140‑1 (MQ=255) tAAGACTTGTGCCAAACTGGCGGATGTAGCCAACCTGCACAAATCCGGTGCGAACAGTGAACCAACAACCTGCGCCGAAGAGCAGGGAAAACATTACCGATCCCC‑CCCGGACGCTGTGAATGAAGGAGAAAAAATCTGgc < 2:1963873/140‑1 (MQ=255) aaGACTTGTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGACAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgca < 1:2587817/140‑1 (MQ=255) cTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcatgca < 1:1084549/140‑1 (MQ=255) cTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcatgca < 1:2220220/140‑1 (MQ=255) cTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcatgca < 1:2471344/140‑1 (MQ=255) ttttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGgcatgcat > 1:5500394/1‑140 (MQ=255) tttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCata < 1:5921962/140‑1 (MQ=255) ttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCatat > 2:6051272/1‑140 (MQ=255) ttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCatat < 2:926113/140‑1 (MQ=255) ttGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCatat < 1:9181706/140‑1 (MQ=255) tGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATc < 2:5640337/140‑1 (MQ=255) tGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATc < 2:9137120/140‑1 (MQ=255) gCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATcc < 1:4073916/140‑1 (MQ=255) gCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTg > 2:2799388/1‑140 (MQ=255) gCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTg > 2:1048223/1‑140 (MQ=255) aGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTcgc < 1:747074/140‑1 (MQ=255) cGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGa < 2:3021063/140‑1 (MQ=255) aaCTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGa < 2:3800972/140‑1 (MQ=255) gCACAACTCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACttt < 1:6943233/140‑1 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑ACAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 2:3465135/140‑1 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc > 2:4563653/1‑140 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 2:8465858/140‑1 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 1:6260103/140‑1 (MQ=255) cacaAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc > 1:3652158/1‑140 (MQ=255) cacaAAGCCGGTGCGAAAAGTGAACCAACCACCTTCGCCGAAGCTCAGGTAAATCATTACCGATCCCC‑AAAGGCCGCTGATAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 2:2041273/140‑1 (MQ=255) aTCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCtgtg > 2:4273028/1‑140 (MQ=255) ccGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTa < 1:9278488/140‑1 (MQ=255) cGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTac > 1:8910612/1‑139 (MQ=255) aaGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCa < 2:7817869/140‑1 (MQ=255) aGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCCTTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCaa < 1:842414/140‑1 (MQ=255) gTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAAt < 2:5401259/140‑1 (MQ=255) gAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTg > 1:4548745/1‑140 (MQ=255) gAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTg > 1:1425539/1‑140 (MQ=255) ccAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGatt < 2:4703136/140‑1 (MQ=255) aacaacCTGCGCCGAAGAGCAGGTAAATCCTGACCGAGCCCC‑CCAGGACGCTGTTAATGAAGGAGAAAACATCTGGCATGCATATCCCTCTGATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaa < 2:2111578/140‑1 (MQ=255) aacaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaa < 2:7952511/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCCTGCATATCCCTCTTAGTGCCGGTCGCGAAGACTTTCCTGTGTAAACGTTACCAATTGTTTaag < 2:7126739/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag < 1:6434680/140‑1 (MQ=255) acaacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaag < 1:6136303/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTCTTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 2:93608/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:5011080/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:6541028/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:4746677/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:7841033/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:8211835/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:8986568/140‑1 (MQ=255) caacCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaaga < 1:3515193/140‑1 (MQ=255) cccTGCGCCGCAGCGCAGGTAAATCATTACCGAGCCCC‑ACAGGCCGCGGTTCCTGAAGGAGAAAATATCGGGCATGCATATCCCTCTGATTGCCGGTCGCGATGACGTTCCGGTGTAAACGTTGCCAAGGGGGTaagaag > 2:2322548/2‑140 (MQ=255) gcgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtata < 1:4707856/140‑1 (MQ=255) gcgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtata < 1:2311380/140‑1 (MQ=255) cgcCGAAGAGCAGGTACATCATTACCGATCCCC‑AAAGGACGCTGTTCCGGAAGGAGAACAACTCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatat > 2:6495404/1‑140 (MQ=255) cgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc < 2:8019300/105‑1 (MQ=255) cgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTc > 1:8019300/1‑105 (MQ=255) cgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatat > 1:5959318/1‑140 (MQ=255) cgcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatat > 2:1279344/1‑140 (MQ=255) gcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAATGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGAGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatata < 2:9024906/140‑1 (MQ=255) gcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatata > 2:8283470/1‑140 (MQ=255) gcCGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGtatata < 2:2418607/140‑1 (MQ=255) cGAAGAGCAGGTACCGCCTTACCGAACCCC‑ACAGGACCCTGTTAATGAACGAGAATAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACg < 2:6750593/140‑1 (MQ=255) cGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACg < 2:7566871/140‑1 (MQ=255) cGAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACg < 1:4376580/140‑1 (MQ=255) gAAGTGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGTAGGAGAAAAAATCTGGCATGCATATACCTCTTATTGCCGGTCGCGATGACTTTCCTTTGTAAACGTTACCAATTGTGTAAGAAGTATATACGc > 2:2897575/1‑140 (MQ=255) gAAGAGCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGc > 2:5769019/1‑140 (MQ=255) atcAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAATGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATTACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACg < 2:1207207/138‑1 (MQ=255) agCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACg < 1:6100357/140‑1 (MQ=255) agCAGGTAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACg < 2:1000079/140‑1 (MQ=255) tAAATCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAATCGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTAc < 1:1239372/140‑1 (MQ=255) tCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGa > 2:261550/1‑140 (MQ=255) tCATTACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTAATTGa > 2:3296285/1‑140 (MQ=255) tACCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTaa > 1:2845674/1‑109 (MQ=255) aCCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTCCTTGATAACt > 1:414778/1‑140 (MQ=255) aCCGATCCCC‑AAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACt > 2:4438941/1‑140 (MQ=255) atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTg > 1:3916620/3‑140 (MQ=255) atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTg > 1:3099870/3‑140 (MQ=255) atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTg > 2:6253590/3‑140 (MQ=255) atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTg > 2:7343579/3‑140 (MQ=255) atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTg > 1:7268303/3‑140 (MQ=255) atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTg > 1:5677793/3‑140 (MQ=255) atccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGAGAACTTCTg > 1:8309642/3‑140 (MQ=255) tccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGc > 1:762051/2‑140 (MQ=255) ccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCg < 1:7066348/140‑1 (MQ=255) ccccAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCg < 1:1558241/140‑1 (MQ=255) | GTTAAACCGCCTGGCTGTGGATGAATGCTATTTTTAAGACTTTTGCCAAACTGGCGGATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAGCAGGTAAATCATTACCGATCCCCAAAAGGACGCTGTTAATGAAGGAGAAAAAATCTGGCATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGTTTAAGAAGTATATACGCTACGAGGTACTTGATAACTTCTGCG > NZ_CP025268/7784‑8059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |