| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,075,379 | +G | intergenic (+21/+234) | ymdF → / ← rutG | general stress protein/pyrimidine utilization transport protein G |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,075,379 | 1 | . | G | 99.1% | 1499.8 / 4.2 | 435 | intergenic (+21/+234) | ymdF/rutG | general stress protein/pyrimidine utilization transport protein G |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base G (154/276); total (155/280) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 444 total aligned reads displayed.
CAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAACCGGGCTAATCAATGACG‑AA‑T‑CATTTTTG‑CTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTG > NZ_CP025268/1075240‑1075510 | cAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑t > 2:146410/1‑140 (MQ=255)cAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑t < 1:5799636/140‑1 (MQ=255) aaGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑tgca < 1:9092027/140‑4 (MQ=255) gCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCCGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGACAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑tgcatt > 1:8029486/1‑135 (MQ=255) gCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑tgcatt > 1:5339786/1‑135 (MQ=255) cAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCAttt < 1:9253869/140‑1 (MQ=255) cAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCAttt < 1:4658788/140‑1 (MQ=255) ggTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCAttttt > 1:2759646/1‑140 (MQ=255) ggTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGc < 1:8678283/140‑1 (MQ=255) gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCa < 1:160724/140‑1 (MQ=255) gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCa > 2:8058588/1‑140 (MQ=255) gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCa > 1:7328410/1‑140 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc < 2:8919826/140‑1 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc > 1:673602/1‑140 (MQ=255) gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAcc > 2:8480628/1‑140 (MQ=255) aTTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAACAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCATAAAGCCATCAccgcc > 2:5543838/1‑140 (MQ=255) tCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGt < 2:3775168/140‑1 (MQ=255) tCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGt < 2:8261324/140‑1 (MQ=255) tCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGt < 1:4778297/140‑1 (MQ=255) aGAATGACCCGCAGCGCGCATCTGAAGCAGGTGAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAc > 1:6166596/1‑140 (MQ=255) aGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAc > 2:6261229/1‑140 (MQ=255) gAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAcc < 2:2972999/140‑1 (MQ=255) gAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTAcc < 1:4215530/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:8852553/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:5669521/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:1954198/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:931862/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 1:4546916/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:3637182/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:5232895/140‑1 (MQ=255) aTGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCg < 2:7449279/140‑1 (MQ=255) aCCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtg > 2:5776516/1‑140 (MQ=255) aCCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGGGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtg > 2:3911563/1‑140 (MQ=255) ccGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCggtggt < 2:3626065/140‑1 (MQ=255) gCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTg < 1:6965813/140‑1 (MQ=255) gcgcgcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATa < 1:1107243/140‑1 (MQ=255) gcgcgcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATa < 2:7753619/140‑1 (MQ=255) cgcATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtg > 1:3220573/1‑140 (MQ=255) cATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGACACTGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAAA‑G‑CAATTTAGTCTGAAGCTCGTCAAAAAGCCATCACCGCCGCTTACCCGCTGGTTGATACtgat > 2:1230571/1‑140 (MQ=255) tCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtgatga < 2:4682605/140‑1 (MQ=255) tCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtgatga < 1:394097/140‑1 (MQ=255) cTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGAc < 1:1820377/140‑1 (MQ=255) aaGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACaaa > 1:8408423/1‑140 (MQ=255) aGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAAt < 1:1245153/140‑1 (MQ=255) cAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGt > 1:3870301/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 1:776970/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTaa > 2:7674258/1‑140 (MQ=255) ggTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTATGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATTTaa > 2:6529352/1‑140 (MQ=255) gTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAg < 1:6909152/140‑1 (MQ=255) gTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAg < 2:9152511/140‑1 (MQ=255) tAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGc > 2:4419429/1‑140 (MQ=255) tAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGc > 1:3730811/1‑140 (MQ=255) tAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGc < 2:306296/140‑1 (MQ=255) tAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGATAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGc < 2:3861700/140‑1 (MQ=255) aaaaaaGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGTCAAATGTAAGCt > 2:9409312/1‑140 (MQ=255) ggtggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTg < 1:2663344/140‑1 (MQ=255) ggtggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTg < 1:7702644/140‑1 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AATT‑CATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGAt < 2:7912919/140‑1 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACtgatg > 2:7174273/1‑119 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGAt > 2:2730892/1‑140 (MQ=255) tggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGAt > 1:4305369/1‑140 (MQ=255) ggtAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATg > 1:2207939/1‑140 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTCGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 2:2506177/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGCCG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 2:2198088/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:2353479/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:5362189/140‑1 (MQ=255) tAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATgcg < 1:5255217/140‑1 (MQ=255) gagCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGa < 2:8801344/140‑1 (MQ=255) agCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGAt < 2:5876151/140‑1 (MQ=255) aGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACACATGTAAGCTTGCCTGATGCGCGATGCt > 1:655021/1‑140 (MQ=255) aGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCt > 2:2044054/1‑140 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATTCTGATGACAAATGTAAGCTTGCCTGATGCGCGATGGTTATCAgg < 1:6308667/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGGCAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg < 1:8909038/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg < 2:4898319/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg < 1:2025655/140‑1 (MQ=255) gCAAAAGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAgg < 2:3537113/140‑1 (MQ=255) aaGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTa < 1:2539956/140‑1 (MQ=255) aGCGACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTAc < 2:5999925/140‑1 (MQ=255) cGACCACTAGCCGGGCTAATCAATGACG‑AC‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTTATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCa < 2:6897286/140‑1 (MQ=255) gACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCag < 2:9273599/140‑1 (MQ=255) gACAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCag < 2:4067774/140‑1 (MQ=255) cAACTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCagaa < 1:8255884/140‑1 (MQ=255) aCTAGCCGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCagaaga < 1:1404172/140‑1 (MQ=255) caagccGGGCTAATCCATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTGATCCGGCCTACCAGACGAt < 2:5038530/136‑1 (MQ=255) gccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGc > 1:6454840/2‑140 (MQ=255) gccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGc > 1:7205556/2‑140 (MQ=255) ccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 1:7517645/140‑1 (MQ=255) ccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 1:987903/140‑1 (MQ=255) ccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 2:6686901/140‑1 (MQ=255) ccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 2:5339786/140‑1 (MQ=255) ccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 2:4218311/140‑1 (MQ=255) ccGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCa < 1:5048241/140‑1 (MQ=255) cGGGCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCaa > 1:1002573/1‑140 (MQ=255) gCTAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatat > 2:3346595/1‑140 (MQ=255) gCTAATCAATGACG‑AA‑TGCATTTGTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatat > 2:5742128/1‑140 (MQ=255) tAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatatat < 1:3528282/140‑1 (MQ=255) tAATCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAatatat < 2:135848/140‑1 (MQ=255) aaTCAATGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATAtt > 1:3024218/1‑140 (MQ=255) aaTGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAAt < 2:6401920/140‑1 (MQ=255) aaTGACG‑AA‑TGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAAt < 1:3565450/140‑1 (MQ=255) | CAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAACCGGGCTAATCAATGACG‑AA‑T‑CATTTTTG‑CTGTAGCTCGTCAAAAAGCCATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTG > NZ_CP025268/1075240‑1075510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |