| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,690,360 | (C)5→6 | pseudogene (1047/1403 nt) | fumC ← | class II fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,690,355 | 1 | . | C | 97.3% | 2155.5 / 42.9 | 635 | pseudogene (1052/1403 nt) | fumC | class II fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base . (11/6); new base C (303/312); total (316/319) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 676 total aligned reads displayed.
TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAC > NZ_CP025268/1690216‑1690487 | cGCTCACGAGTCCGTTCAATACCCACTGCGCAGTGTTTGTAAAAACTATCCCAGCACTCAGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGAACACCATTGGACGCAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑c‑c < 2:1280831/140‑1 (MQ=255) aCGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑c‑ccccca < 1:8445177/140‑3 (MQ=255) gATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑c‑cccccatg < 1:7520376/140‑5 (MQ=255) aTTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑c‑cccccatgt < 1:1025700/140‑6 (MQ=255) cGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGa < 1:563977/140‑1 (MQ=255) ggTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGAt < 1:4850933/140‑1 (MQ=255) gTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATc > 2:8349166/1‑140 (MQ=255) tCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCATTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGc < 1:3609767/140‑1 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑c‑cccccatg > 1:2145399/1‑124 (MQ=255) ccACTGCGCAGTGTTTGTTAACACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCAcgtcg < 1:8663043/140‑1 (MQ=255) cACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGACATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCAcgtcgt > 2:1447983/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGtt > 1:7261835/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGtt > 1:6444739/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGtt > 2:5271354/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGtt > 1:273012/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGtt > 2:8494134/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTccc > 1:7939232/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTccc > 1:1385860/1‑140 (MQ=255) gcgcAGTGTGTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGCTTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCCCGTCGTTccc > 2:9404668/1‑140 (MQ=255) cgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTcccc > 1:2481000/1‑140 (MQ=255) cAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCAt < 1:6661571/140‑1 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCa > 1:9214295/1‑140 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCa < 1:4221910/140‑1 (MQ=255) gtgtTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCa < 2:4083598/140‑1 (MQ=255) tttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCt < 1:4913341/140‑1 (MQ=255) tgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGa < 1:878839/140‑1 (MQ=255) tgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGa < 2:2737327/140‑1 (MQ=255) gttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAc > 1:7747341/1‑140 (MQ=255) gttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAc > 1:3925189/1‑140 (MQ=255) gttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAc > 1:7005181/1‑140 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 2:2059970/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 1:6019944/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑CACCCCATGTTGATCTCCACGTCGTTCCCCATCACCTGAcag < 2:447832/140‑1 (MQ=255) aaaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 2:8865655/140‑1 (MQ=255) aaaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 1:5768397/140‑1 (MQ=255) atcTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAATACGTTCAGTTCTCAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCAGCACCTGTcagcag > 2:7019182/3‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGTAAATAGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGGTCCCCATCACCTGAcagcag > 2:7998958/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 2:3391946/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 2:6914299/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 2:4307454/1‑140 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag > 2:1825937/1‑140 (MQ=255) tttCCATGCCCTCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCTTTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 1:9336047/140‑1 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 1:2186090/140‑1 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 2:8252990/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 1:6896757/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa > 1:4483085/1‑140 (MQ=255) tCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACAGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCAt > 2:3095837/1‑140 (MQ=255) tGCCATCTGCCAGCAAGCGCACCGATTGCAGGACCTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCCTCACCTGACAGCAGAGCATGGtt > 2:7539430/1‑140 (MQ=255) tGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGtt > 1:1067020/1‑140 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCCCCATTGGACGGCAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATCTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:2897493/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:8620722/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:7162184/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:5166681/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:2225441/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:2539387/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:6416428/140‑1 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 1:469258/140‑1 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 1:190758/140‑1 (MQ=255) tGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCt < 2:9162781/140‑1 (MQ=255) ccAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTca < 1:1256358/140‑1 (MQ=255) cAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcac < 2:356732/140‑1 (MQ=255) cAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcac < 2:2345786/140‑1 (MQ=255) cAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcac < 1:5501863/140‑1 (MQ=255) cAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcac < 1:408969/140‑1 (MQ=255) aGCAAGCGCACGTTTTGCAGTAATTTNTGTTTAACAATTGGACGGACGAGGTTATGTTAAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGNTTAATGCCTcaca < 1:6233018/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:3679547/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:3402430/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:3021275/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:5338822/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:1317435/140‑1 (MQ=255) gCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACATGACAGCAGAGCATGGTTAAAGCCTCacac > 2:5741962/1‑140 (MQ=255) gCAAGCGCACCGAATGCAGGAAATTGTTGATCACCATTGGCAGGAAGAAGTTCACTTAAACGTTAACGGACGA‑GCC‑CCCCATGTTGCTCGCCACGTCGTTCCCCATCACCTGAAATCAGAGCATGGTTAATGCCTCacac < 2:4206780/140‑1 (MQ=255) ccaGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTGACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGGTCCCCCTCACCTGACAGCAGAGCATGGTTAATGCCTCACACt < 2:5536985/138‑1 (MQ=255) cAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACt > 2:472877/1‑140 (MQ=255) cAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACt < 1:206000/140‑1 (MQ=255) cACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTg > 2:5945685/1‑140 (MQ=255) gCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACt > 1:98084/1‑140 (MQ=255) gCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACt > 2:4975027/1‑140 (MQ=255) aTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:6530204/117‑1 (MQ=255) ttGTGGATCCCCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCgg < 1:3165447/140‑1 (MQ=255) ttGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCgg < 1:8129710/140‑1 (MQ=255) tgtgGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCTC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGc > 2:115416/1‑140 (MQ=255) gtgGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCa < 2:7191928/140‑1 (MQ=255) gtgGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCa < 2:7302654/140‑1 (MQ=255) cACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTg > 2:7820298/1‑140 (MQ=255) ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAg < 2:1901757/140‑1 (MQ=255) ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAg < 1:1800658/140‑1 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTTATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACAGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 2:3860246/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 2:1648512/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 2:537163/1‑140 (MQ=255) gttcagttcaAAGTTACAGGAAGC‑GCC‑CCCCATGTTGATCGCCAAGTCGTTCACAAACACCTGAAAGCAGAGCATGGTTAATGCCTCACACAGTGATGGGTTCACTTTCCCCGTACACATAGAGCTGCCCGGCTCAattt > 2:2629114/1‑140 (MQ=255) ctcagttccAAGTTACCGGACGC‑GCC‑CCCCCAGTTGCTCGCCACGTCGTTCCCCCTCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCGGCCCGGCTCATTTTc < 2:6759835/139‑1 (MQ=255) cagttcaAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCg < 2:6100071/140‑1 (MQ=255) gttcaAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACtgtg < 1:8281764/90‑1 (MQ=255) gttcaAAGTTACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCggg > 1:8956953/1‑140 (MQ=255) ttACCGGACGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 1:1660942/140‑1 (MQ=255) ttACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 1:6365936/140‑1 (MQ=255) ttACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 2:8122396/140‑1 (MQ=255) ttACCGGAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 1:9090196/140‑1 (MQ=255) ggAAGC‑GCC‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAc < 1:4426039/140‑1 (MQ=255) | TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAC > NZ_CP025268/1690216‑1690487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |