| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,858,752 | +T | pseudogene (395/2078 nt) | flhA → | formate hydrogenlyase transcriptional activator FlhA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,858,748 | 1 | . | T | 97.7% | 1646.3 / 21.8 | 434 | pseudogene (391/2078 nt) | flhA | formate hydrogenlyase transcriptional activator FlhA |
| Reads supporting (aligned to +/- strand): ref base . (1/9); new base T (223/201); total (224/210) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.84e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 513 total aligned reads displayed.
ACGCAGCATTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCG > NZ_CP025268/2858609‑2858882 | gcagcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tt > 2:5292458/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 2:7249066/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 1:5791621/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 2:4789502/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 2:358772/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 2:2864540/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 2:5471041/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 1:7486573/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 1:1000379/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 1:8418471/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 2:1414683/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 2:8619311/1‑140 (MQ=255) agcaTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGACTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttt > 2:8190358/1‑140 (MQ=255) agcaGTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCAATACCCAAAATATGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttg > 2:3184189/1‑139 (MQ=255) caTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttttg > 2:833290/1‑138 (MQ=255) aTTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑tttttgg < 1:7299475/140‑4 (MQ=255) ttgtGTCGCGCCCAGATCCGCTGCAGTGCAGGTACGAAGAATTTTGTGAAACCGGGCCGCAGCGGGACGCAGGTGGGCTCTACCAAAAATTTGGTCACTATTGCCTGCTGCCACTGGCGGCGGAAGGGCAT‑A‑tttttggt < 2:7746530/137‑5 (MQ=255) gTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCt < 1:373759/140‑1 (MQ=255) gTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCt < 1:6723561/140‑1 (MQ=255) gTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCt < 1:1460752/140‑1 (MQ=255) cgcgCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCtgt > 1:6872278/1‑140 (MQ=255) cgcCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGa > 1:5012825/1‑140 (MQ=255) cccTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAAt > 2:705758/1‑140 (MQ=255) gATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTAt < 1:1249456/140‑1 (MQ=255) gATACGCTGCATTGCAGTTACGAAGAATTGTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTAt < 1:7707272/140‑1 (MQ=255) cTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTa > 1:7784855/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTAt < 1:9231798/140‑1 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTAt > 1:2275318/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTAt > 2:6870384/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTAt > 1:208709/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTAt > 1:5142826/1‑140 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAAGTTGGTCACTCTTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCGGTGAATTTAGTCGttct > 2:1725344/1‑138 (MQ=255) tGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAAGTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGACTTTAGTCGTTAt > 2:4071738/1‑140 (MQ=255) cATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATgt > 2:236510/1‑139 (MQ=255) ttGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGACGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACg > 1:4051256/1‑140 (MQ=255) ttGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACg > 1:6387121/1‑140 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCATAA‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:1811338/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:4785888/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGAt < 1:4559055/140‑1 (MQ=255) gCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGAt < 2:2048099/140‑1 (MQ=255) gCAGTGACGAAGACTTTTGTGAACCCGGGCCGCAGCTGGACGCAGGTGGGCGATACCCCCCATTTGGTCACGATTGCCTGAAGCCCCTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCGGTGAATTTAGTCGTTATGACGAt < 2:3050944/140‑1 (MQ=255) ttACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGcc > 1:6680427/1‑140 (MQ=255) ttACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGcc > 2:519278/1‑140 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGcccc > 2:4869680/1‑140 (MQ=255) aCGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGcccc > 1:1582621/1‑140 (MQ=255) gaaTTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAg < 1:5498486/140‑1 (MQ=255) gtgAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGaaaaa < 1:2794368/140‑1 (MQ=255) tgAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCACAGTAGAGAAAAag > 2:1581511/1‑140 (MQ=255) gCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATc < 1:7971747/140‑1 (MQ=255) cTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCa < 1:9352629/140‑1 (MQ=255) cAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCACCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACAttt > 2:4598722/1‑140 (MQ=255) aGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTa > 2:4263576/1‑140 (MQ=255) aGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTa > 2:9105780/1‑140 (MQ=255) gTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACg < 1:3644736/140‑1 (MQ=255) tGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGc < 1:3215967/140‑1 (MQ=255) gggCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCa > 2:2274133/1‑140 (MQ=255) ggCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAg < 2:6686525/140‑1 (MQ=255) cTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGAt < 1:4912459/140‑1 (MQ=255) cTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGAt < 1:8300175/140‑1 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 1:6193650/1‑140 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 1:7337331/1‑140 (MQ=255) taCCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGt > 1:905563/1‑140 (MQ=255) cccAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGttt > 1:3027995/1‑140 (MQ=255) cccAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGttt < 2:5995806/140‑1 (MQ=255) cccAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGttt > 1:3913346/1‑140 (MQ=255) cccAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGttt > 1:8799534/1‑140 (MQ=255) aaaaTTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTg > 1:3503110/1‑140 (MQ=255) aaaTTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGTCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTgt < 2:6624105/140‑1 (MQ=255) aaaTTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTgt < 1:5387363/140‑1 (MQ=255) aaTTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGAGGATCGCCCCTGGAGCGAAAAAGTGTTCATTCGTATGCATAGATTTAAGCAGATCGTTTATgac > 2:7906316/1‑138 (MQ=255) ttGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTgtcgtc > 1:1142277/1‑140 (MQ=255) ggTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCAc < 2:7397281/140‑1 (MQ=255) cTATTGCCTGCTGCCTCTGGCGGAGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATAGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAAc < 2:7529753/140‑1 (MQ=255) cTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAAc < 2:1839951/140‑1 (MQ=255) cTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAAc < 2:2187904/140‑1 (MQ=255) cTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGAGCGTTTCTGTCGTCACCGAAc < 2:1892758/140‑1 (MQ=255) ccTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATcc > 1:1860132/1‑140 (MQ=255) cTGATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCa < 1:6586501/140‑1 (MQ=255) gATGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCaga < 1:81840/140‑1 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:2528727/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:5731832/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 2:392663/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 2:6339977/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGc > 1:714462/1‑140 (MQ=255) tGCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCAGGAGCGAAAAAGTGTTCACTCGTCTGCAAACATATACGCAGATCGTTTCTGTCGGCACCGAACAAATCCagagg > 2:2495644/1‑139 (MQ=255) gCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGATTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGATCAAATCCAGAGcc < 2:1101505/140‑1 (MQ=255) gCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGcc < 1:6961906/140‑1 (MQ=255) gCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGcc < 2:5539638/140‑1 (MQ=255) gCCACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGcc < 1:2439775/140‑1 (MQ=255) cACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgc > 1:5875153/1‑140 (MQ=255) cACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgc < 1:6521021/140‑1 (MQ=255) cACTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgc < 1:5618194/140‑1 (MQ=255) cACGGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCGGTGAATTTATTCGGTATGACGCTCGCCCCTGGAGCGACAAAGAGTTCAATCGTCTGCAACCATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgc < 2:3764374/140‑1 (MQ=255) aCTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCcgcg > 1:4270037/1‑140 (MQ=255) cTGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgt > 1:861148/1‑140 (MQ=255) tGGCGGCGGAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGcgtc > 1:4464568/1‑140 (MQ=255) ggcggAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTGTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTa < 2:6478152/140‑1 (MQ=255) ggAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACa < 2:1001121/140‑1 (MQ=255) ggAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACa > 2:3379454/1‑140 (MQ=255) gAAGGGCAT‑ATTTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACaa > 1:2646038/1‑140 (MQ=255) | ACGCAGCATTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCAGCTGGACGCAGGTGGGCTATACCCAAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGAAGGGCAT‑A‑TTTTGGTGGCTGTGAATTTATTCGTTATGACGATCGCCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTTTCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTTAACAATGTCG > NZ_CP025268/2858609‑2858882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |