Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,233,2390TA30.5% 202.6 / 37.8 131intergenic (+139/+234)yohP/dusCsmall membrane protein YohP/tRNA dihydrouridine(16) synthase DusC
Reads supporting (aligned to +/- strand):  ref base T (26/56);  new base A (36/0);  total (75/56)
Fisher's exact test for biased strand distribution p-value = 1.11e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 134 total aligned reads displayed.

AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378
                                                                                                                                           |                                                                                                                                           
aattaattAATGTCATCAGGTCCTAAAATAACGAGAATATTTAAGACTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTg                                                                                                                                            <  1:4220387/140‑1 (MQ=255)
  ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCa                                                                                                                                          <  2:4641626/140‑1 (MQ=255)
  ttaattaaTGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGAATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCa                                                                                                                                          <  2:84015/140‑1 (MQ=255)
          tGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCggg                                                                                                                                  <  1:8934757/140‑1 (MQ=255)
          tGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCggg                                                                                                                                  <  1:8935909/140‑1 (MQ=255)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCCAAC‑CCCCCCCCCCCCCCAcccccccgcgca                                                                                                                              >  1:5488601/1‑133 (MQ=255)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGCGGGCAAAAGCCCCCGCCCCCCGCCCCCCCCGGcact                                                                                                                              >  1:1787178/1‑140 (MQ=37)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGcact                                                                                                                              >  2:7221358/1‑140 (MQ=255)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCCGGctct                                                                                                                              >  2:7221041/1‑140 (MQ=255)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCAGATAAGCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCGCCCCCAGCACCCCCCGGcacg                                                                                                                              >  2:469507/1‑137 (MQ=37)
              atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCAGCCTGGTGCGCTCCTGTCATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGcgca                                                                                                                              >  2:1880769/1‑137 (MQ=255)
               tcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCGCTg                                                                                                                             >  2:2696612/1‑140 (MQ=255)
                        aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCCCCCCCCGGCTCTGGCGAACaaa                                                                                                                    >  2:5376072/1‑140 (MQ=25)
                          aaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAt                                                                                                                  <  2:1380990/140‑1 (MQ=255)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCCAACCCCCCCCCCCCCGCCCCCCCCCGCCCAGGCGCACaaaaaacc                                                                                                               >  1:2867670/1‑136 (MQ=25)
                             aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCAGGCGAACAAAATcgc                                                                                                               >  2:1925989/1‑140 (MQ=255)
                              aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAAACCCCCCCCCCCCCAGCAACCCCCCGCACATGCGAaaaaaaaaccc                                                                                                              >  1:6894577/1‑135 (MQ=21)
                              aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgcc                                                                                                              <  2:8922287/140‑1 (MQ=255)
                                   aaTATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCCCCGCCCCCAGCACCCCCGGGCTCATGCGAACAAAAAAGCCGCGgc                                                                                                         >  2:3730079/1‑140 (MQ=21)
                                             tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt                                                                                               <  1:5654989/140‑1 (MQ=255)
                                             tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAAGGGGCGGCCAAAAGCCCCCCCCCCCAGCACCCCCCGGCACAGGCGAACAAAAACAACCCAGCGCCGTGccca                                                                                               >  2:1445228/1‑139 (MQ=18)
                                                 tcATCCTGTTGCGCTCCTGTCATGTGCATTTCTTCATATAATCCCTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCGCGGc                                                                                           <  2:7157818/140‑1 (MQ=255)
                                                 tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCGGCGCGGTGCCCTCGGc                                                                                           >  2:7831293/1‑140 (MQ=255)
                                                 tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTACATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCGGGCACAGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc                                                                                           >  2:5119664/1‑140 (MQ=17)
                                                  cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt                                                                                          >  2:7504288/1‑140 (MQ=255)
                                                  cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCCCCGCCCCCAGCACCCCCCGGCACACGCGAACAAAAACGCCCCAGCGCGGTGCCCACGGCt                                                                                          >  2:7504153/1‑140 (MQ=18)
                                                   aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt                                                                                         <  2:8893729/140‑1 (MQ=255)
                                                   aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt                                                                                         <  1:354301/140‑1 (MQ=255)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATCTAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAAGGGCGCCGCCCCCAGCACCCCCCGGCTCTTGGGAACAAAAAACCCCCGGCGCGGTGCCCTCCGCCTATcccg                                                                                   >  2:2512540/1‑139 (MQ=18)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCATGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCAGCGCGGTGCCCTCGGCATATacca                                                                                   >  2:7874169/1‑139 (MQ=18)
                                                         ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGCCCAAAGCCGCCCCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAAAGCCGCGGCGCGGTGGCCTCGGCTTATccca                                                                                   >  2:1460644/1‑139 (MQ=18)
                                                             gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCATGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTATGGCGAACAAAATAGCCGCTGCGCCGTGCCCTCGGCATATCCCTTACg                                                                               >  2:6851377/1‑140 (MQ=18)
                                                             gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCTGGCGAACAAAAACGCCGCTGCGCGGTGCCCTCGGCATATCCCTTACg                                                                               >  2:8786752/1‑140 (MQ=255)
                                                              cTCCTGTCATGTGCATTGCTTCATCTAATCACTGGCGCAAGGAGCGC‑GGATGGGGCGGCCAAAAGCCGCCGCCCCCATCACCCCCCGGCACATGCGAAAAAAAACGCCCCATCGCGGTGGCCGCGGCTTATACCATaacg                                                                              >  2:5822310/1‑137 (MQ=12)
                                                              cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCATACgg                                                                              >  2:6548559/1‑140 (MQ=18)
                                                                 cTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCGCACAAAATCGCCGCTGCGCGGGTCCCACGGCTTATACCAGAAGGCTa                                                                           >  2:6404782/1‑140 (MQ=17)
                                                                   gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTAcc                                                                         <  1:337547/140‑1 (MQ=255)
                                                                         tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAAACCCCCAGCGCGGTGGCCCCCGCAGATCCCATAAGGCAAccccggcg                                                                   >  2:5470792/1‑134 (MQ=9)
                                                                         tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAAACGCCCCCGCCCCCCGCCACCCCCCGCACAGGCGAACAAAAAACCCGCAGCCCGGTGCCCACGGCATAAACCATACGGCAAACGGGTCg                                                                   >  2:6365817/1‑140 (MQ=9)
                                                                         tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCCCCGCCCCCCCCAGCAACCCCCGGCTCAGGGGAACCAAATCTCCCCTGCGCGGGGCCCACCGCGTATCCCCAACCGCTAACCGGTCg                                                                   >  2:3701248/1‑140 (MQ=9)
                                                                         tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCGGCCCCCCCGGGCTCTGGCGAACAAAAACGCCGCGGCGCGGTGCCCGCGGCTTATCCCATAAGGCTGCCCGGTCg                                                                   >  2:1782353/1‑140 (MQ=14)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCCCCCCCTTCACCCCCCGGCTCTGGCGAACAAAATAGCCCCTGCGCGGGGCCCGCGGGTTATCCCTTTCCGCTACCGGGGCggg                                                                 >  2:6372351/1‑140 (MQ=14)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                                 <  2:6034012/140‑1 (MQ=255)
                                                                           cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg                                                                 <  1:5851722/140‑1 (MQ=255)
                                                                             ttGCTTCATTTAATCACTGGCGAAAGGAGCGC‑GCAGGGGGCGGCCTATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGATGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  2:1660546/140‑1 (MQ=255)
                                                                             ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCAGGGGGGGGCAATAGCCGCCCCCCCCAGCACCCCCGGGCTCTGGCGAAACAAAAAGCCGCTGCGCGGTGCCCACGGCATATACCATACGGCTAACCGGTCGGgcg                                                               >  2:699495/1‑140 (MQ=14)
                                                                             ttGCTTCATATAACCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCGGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  2:2201569/140‑1 (MQ=255)
                                                                             ttGCTTAATTTACTCCCTGGCGCTTGGTGCGG‑GCTGGGGGCGGCCATTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGGGCCCTCTGCTTATCCCTTACGGCTACCGGGTCGGgcg                                                               <  1:429019/140‑1 (MQ=11)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCAA‑AACCCCCCCCCCCCGCACCCCCCGGCTCTGGCGCAAAAAAACACCGCTGCGCGGGGGCCGCGGCGTATTCCCAAAGGCTACCCGGGGGGgcgc                                                              >  2:2177641/1‑140 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc                                                              <  1:1099782/140‑1 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCGCCCCCGCCCCCTGCCCCCCCCGGCAAAGGCGAACAAACACCCCGCTGCGCGGTGCCCGCGGCTTATACCCTACCGCGACCCGGGCGGgcgc                                                              >  2:8543930/1‑140 (MQ=14)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc                                                              <  1:7961640/140‑1 (MQ=255)
                                                                              tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc                                                              <  1:2375394/140‑1 (MQ=255)
                                                                                cTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCCCCCCCCCCAGCACCCCCCGGCACATGCGAACAAAAAACCCGCGGCGCCGTGCCCACGGCGTATCCCCAAAGGCTAACCGGTCGGGCGCGa                                                            >  2:4890204/1‑140 (MQ=9)
                                                                                   cATATAATCACTGGCGCACGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt                                                         <  1:188458/140‑1 (MQ=255)
                                                                                   cATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt                                                         <  2:9392425/140‑1 (MQ=39)
                                                                                   cATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAAAGCCGCCGCCCCCTGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCACGGCATATCCCATACGGCAACCCGGTCGGGCGCGAGGt                                                         >  2:3028533/1‑140 (MQ=14)
                                                                                     tataATCACTGGCGCATGGAGCGC‑GATGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa                                                       <  1:2847370/140‑1 (MQ=255)
                                                                                        aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCCCCCCCAGCACCCCCCGGCACTGGCGAACAAAAAAGCCCCAGCGCCGTGCCCACCGCTTAAACCAAAACGCAACCCGGGCCGGCGCGAGGGAACaa                                                    >  2:2822178/1‑139 (MQ=2)
                                                                                        aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                                    <  2:311971/140‑1 (MQ=34)
                                                                                        aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt                                                    <  1:7004534/140‑1 (MQ=34)
                                                                                        aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCTGCAACCCCGGGCTCTGGCGAACAAAATCCGCCCAGCGCGGTGCCCACGGCATATCCCGTACGGCTACCCGGTCGGGCGCGAGGTAACAt                                                    >  2:7059965/1‑140 (MQ=11)
                                                                                          tCACTGGCGCAAGGAGCGC‑GGAGGGGGCGGCCCAAAACCCCCGCCCCCAGCACCCCCCGGCTCATGCGGAAAAAAAAACCCCAGCGCGGTGCCCACCGCCTTTACCATAAGGCGAACCGGTAGGGCGCGAGGTAACaaac                                                  >  2:3336824/1‑137 (MQ=255)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCCCCGCCCCCAGCACCCCCCGGCGCAGGCCAACAAAATCGCCGCGGCGCGGGGCCCTCGGCGTATACCTTACGGCTTCCGGGTCGGGCGCGAGGTaaactcc                                                  >  2:6714505/1‑135 (MQ=11)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGGCAATAGCCGCCGCCCCCAGCACCCCCCGGCTCAGGCGCACAAAAACGCCGCGGCGCGGGGCCCGAGGCATATCCCGTACGGCTACCGGGTAGGGCGCGAGGTAAccacc                                                  >  2:3977735/1‑136 (MQ=11)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCGCCCCCCGCCCCCCCCGGCACTGGCGAACAAAAACGCCCCGGCGCGGTGCCCACGGCGTATACCCTACCGCGACCCGGTCGGGCGCGCGGGAACAtac                                                  >  2:4785982/1‑138 (MQ=2)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATcc                                                  <  2:6768586/140‑1 (MQ=33)
                                                                                          tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCGGCGCGGTGCCCACGGCTTATACCTTACGGCTACCGGGTCGGGCGCGAGGTAACATcc                                                  >  2:5084517/1‑140 (MQ=11)
                                                                                                          cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  2:1942375/140‑1 (MQ=32)
                                                                                                          cgc‑gcAGGGGGCGGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt                                  <  2:6094488/140‑1 (MQ=17)
                                                                                                           gc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTc                                 <  2:7434898/140‑1 (MQ=32)
                                                                                                            c‑gcAGGGGGCGGCCAATAGCCGCCGCCCCCCGCACCCCCCGGCTCTGGCGAACAAAAAAGCCGCAGCGCGGGGGCCACGGCGTAAAACATACGGCTACCCGGTCGGGCGCGAGGTAACATCCCAGTAAAAAGCGCCCTCa                                >  2:7264353/1‑140 (MQ=11)
                                                                                                              gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAg                               <  1:2822178/140‑1 (MQ=32)
                                                                                                                aGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                             <  2:7283641/140‑1 (MQ=17)
                                                                                                                aGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                             <  1:1857187/140‑1 (MQ=32)
                                                                                                                 gggggCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc                            <  1:7504288/140‑1 (MQ=32)
                                                                                                                       ggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                             <  1:8918208/133‑1 (MQ=32)
                                                                                                                       ggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc                             >  2:8918208/1‑133 (MQ=32)
                                                                                                                        gcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCa                     >  2:6313860/1‑140 (MQ=32)
                                                                                                                         ccAATCGCCTCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAt                    >  2:230535/1‑140 (MQ=17)
                                                                                                                         ccAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                        >  1:8147329/1‑120 (MQ=32)
                                                                                                                         ccAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg                                        <  2:8147329/120‑1 (MQ=32)
                                                                                                                         ccAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAt                    <  2:1145125/140‑1 (MQ=32)
                                                                                                                         ccAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAt                    <  2:1145176/140‑1 (MQ=32)
                                                                                                                            aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTACCATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  2:1550522/1‑140 (MQ=17)
                                                                                                                            aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg                 >  1:1310290/1‑140 (MQ=32)
                                                                                                                             tCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAGAACGCGCCCTCAGCCCACATCCATGTgg                >  1:6245698/1‑140 (MQ=17)
                                                                                                                              cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg               >  1:3544718/1‑140 (MQ=32)
                                                                                                                              cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg               <  2:6696401/140‑1 (MQ=32)
                                                                                                                              cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg               >  2:6472204/1‑140 (MQ=32)
                                                                                                                              cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTGATCCCGTACGGCAACCGGGTCGGGCGCGCGGTCACCTCCCTGTACCACGCGCCCTCCGCCCCCATCCATGTggg               >  1:465643/1‑140 (MQ=11)
                                                                                                                                ccgccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCt             >  1:6777922/1‑140 (MQ=32)
                                                                                                                                   ccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcc          >  2:9368447/1‑140 (MQ=32)
                                                                                                                                   ccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcc          >  2:5413751/1‑140 (MQ=32)
                                                                                                                                    cgccCCCTGCACCCCCGGTCTCCGGCGCACACAATCGCCGCTGCGCCGTGCCCTCGGCTTATCCCTTACGGCTCCCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGccc         <  2:7007615/140‑1 (MQ=11)
                                                                                                                                     gccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcccc        <  1:238284/140‑1 (MQ=32)
                                                                                                                                     gccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcccc        <  1:238146/140‑1 (MQ=32)
                                                                                                                                      cccccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCg       <  1:5376245/140‑1 (MQ=32)
                                                                                                                                      cccccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCg       <  1:5376072/140‑1 (MQ=32)
                                                                                                                                           tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt  >  1:1225775/1‑140 (MQ=32)
                                                                                                                                           |                                                                                                                                           
AATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTT  >  NZ_CP025268/2233101‑2233378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑