Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP025268 | 2,233,248 | 0 | G | C | 25.2% | 291.2 / 61.7 | 147 | intergenic (+148/+225) | yohP/dusC | small membrane protein YohP/tRNA dihydrouridine(16) synthase DusC |
Reads supporting (aligned to +/- strand): ref base G (57/53); new base C (37/0); total (94/53) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.65e-09 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 149 total aligned reads displayed.
TGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAAC > NZ_CP025268/2233111‑2233386 | tGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCggg < 1:8934757/140‑1 (MQ=255) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCTCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCACCCCCGGGcact > 2:6112408/1‑140 (MQ=255) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGCGGGCAAAAGCCCCCGCCCCCCGCCCCCCCCGGcact > 1:1787178/1‑140 (MQ=37) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCGGGGGGGGGCCAAAAGCCCCCCCCCCCAGCACCCCCCGGcaca > 1:9325940/1‑137 (MQ=37) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCCGGctct > 2:7221319/1‑140 (MQ=255) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGcact > 2:7221358/1‑140 (MQ=255) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCAGCCTGGTGCGCTCCTGTCATGTGCATTGCTTCATATAAGCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGcgca > 2:1880769/1‑137 (MQ=255) aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCCCCCCCCGGCTCTGGCGAACaaa > 2:5376072/1‑140 (MQ=25) aaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAAt < 2:1380990/140‑1 (MQ=255) aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCCAACCCCCCCCCCCCCGCCCCCCCCCGCCCAGGCGCACaaaaaacc > 1:2867670/1‑136 (MQ=25) aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCAGCACCCCCGGGCTCAGGCGAACAAAATcgc > 2:1925989/1‑140 (MQ=255) aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAAACCCCCCCCCCCCCAGCAACCCCCCGCACATGCGAaaaaaaaaccc > 1:6894577/1‑135 (MQ=21) aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgcc < 2:8922287/140‑1 (MQ=255) aaTATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCCCCGCCCCCAGCACCCCCGGGCTCATGCGAACAAAAAAGCCGCGgc > 2:3730079/1‑140 (MQ=21) tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAAGGGGCGGCCAAAAGCCCCCCCCCCCAGCACCCCCCGGCACAGGCGAACAAAAACAACCCAGCGCCGTGccca > 2:1445228/1‑139 (MQ=18) ctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCgg < 2:5593190/140‑1 (MQ=255) tcATCCTGTTGCGCTCCTGTCATGTGCATTTCTTCATATAATCCCTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCGCGGc < 2:7157818/140‑1 (MQ=255) tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCGGCGCGGTGCCCTCGGc > 2:7831293/1‑140 (MQ=255) tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTACATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCCCCCCCAGCACCCCCGGGCACAGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGc > 2:5119664/1‑140 (MQ=17) cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt > 2:7504288/1‑140 (MQ=255) cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCCCCGCCCCCAGCACCCCCCGGCACACGCGAACAAAAACGCCCCAGCGCGGTGCCCACGGCt > 2:7504153/1‑140 (MQ=18) cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCACGGGGCGGCCAATACCCGCCCCCCCCATCACCCCCCGGCGATGGCGAACAAAAAACCCCCAGCGCGGGGcccaccgcg > 2:4405241/1‑134 (MQ=18) aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt < 1:354301/140‑1 (MQ=255) aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt < 2:8893729/140‑1 (MQ=255) tGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATcc < 2:6633273/140‑1 (MQ=255) ttGCGCTCCTGTCATGTGCATTGCTTCATCTAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCCAAGGGCGCCGCCCCCAGCACCCCCCGGCTCTTGGGAACAAAAAACCCCCGGCGCGGTGCCCTCCGCCTATcccg > 2:2512540/1‑139 (MQ=18) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCATGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCCGGCTCTGGCGAACAAAATCGCCGCAGCGCGGTGCCCTCGGCATATacca > 2:7874169/1‑139 (MQ=18) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGCCCCACCCCCCCCCCCCCACCACCCCCCCGCACAGGCGAACAAAAAAACCCCCGCGCCGGGCCCCCGGCATaaacca > 2:2188357/1‑135 (MQ=12) ttGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGGGGCCCAAAGCCGCCCCCCCCAGCACCCCCCGGCTCTGGCGAACAAAAAAGCCGCGGCGCGGTGGCCTCGGCTTATccca > 2:1460644/1‑139 (MQ=18) cTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCGCACAAAATCGCCGCTGCGCGGGTCCCACGGCTTATACCAGAAGGCTa > 2:6404782/1‑140 (MQ=17) gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTAcc < 1:337547/140‑1 (MQ=255) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAAACGCCCCCGCCCCCCGCCACCCCCCGCACAGGCGAACAAAAAACCCGCAGCCCGGTGCCCACGGCATAAACCATACGGCAAACGGGTCg > 2:6365817/1‑140 (MQ=9) tgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCCCCGCCCCCCCCAGCAACCCCCGGCTCAGGGGAACCAAATCTCCCCTGCGCGGGGCCCACCGCGTATCCCCAACCGCTAACCGGTCg > 2:3701248/1‑140 (MQ=9) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCCCCCCCTTCACCCCCCGGCTCTGGCGAACAAAATAGCCCCTGCGCGGGGCCCGCGGGTTATCCCTTTCCGCTACCGGGGCggg > 2:6372351/1‑140 (MQ=14) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg < 2:6034012/140‑1 (MQ=255) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCggg < 1:5851722/140‑1 (MQ=255) ttGCTTCATTTAATCACTGGCGAAAGGAGCGC‑GCAGGGGGCGGCCTATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGATGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg < 2:1660546/140‑1 (MQ=255) ttGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCAGGGGGGGGCAATAGCCGCCCCCCCCAGCACCCCCGGGCTCTGGCGAAACAAAAAGCCGCTGCGCGGTGCCCACGGCATATACCATACGGCTAACCGGTCGGgcg > 2:699495/1‑140 (MQ=14) ttGCTTAATTTACTCCCTGGCGCTTGGTGCGG‑GCTGGGGGCGGCCATTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGGGCCCTCTGCTTATCCCTTACGGCTACCGGGTCGGgcg < 1:429019/140‑1 (MQ=11) tGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGGGGCCAA‑AACCCCCCCCCCCCGCACCCCCCGGCTCTGGCGCAAAAAAACACCGCTGCGCGGGGGCCGCGGCGTATTCCCAAAGGCTACCCGGGGGGgcgc > 2:2177641/1‑140 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc < 1:1099782/140‑1 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCATCGCCCCCGCCCCCTGCCCCCCCCGGCAAAGGCGAACAAACACCCCGCTGCGCGGTGCCCGCGGCTTATACCCTACCGCGACCCGGGCGGgcgc > 2:8543930/1‑140 (MQ=14) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc < 1:7961640/140‑1 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc < 1:2433412/140‑1 (MQ=255) tGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcgc < 1:2375394/140‑1 (MQ=255) cATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt < 2:9392425/140‑1 (MQ=39) cATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGt < 1:188633/140‑1 (MQ=39) cATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCCCCGCCCCCAGCACCCCCCGGCTCAGGCGAACAAAAAAGCCCCGGCGCGGTGCCCACCGCATATCCCATACCGCAACCCGGTCGGGCGCGACGt > 2:3028404/1‑140 (MQ=14) tataATCACTGGCGCATGGAGCGC‑GATGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 1:2847370/140‑1 (MQ=255) tataATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAAACGCCGCCGCCCCCAGCCCCCCCCGGCTCTGGCGCACAAAAAACCCGCGGCGCGGTGGCCACCGCTTATCCCTTACGGCTACCGGGTCGGGCGCGCGGGaa > 2:7414384/1‑140 (MQ=11) aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCCCCCCCAGCACCCCCCGGCACTGGCGAACAAAAAAGCCCCAGCGCCGTGCCCACCGCTTAAACCAAAACGCAACCCGGGCCGGCGCGAGGGAACaa > 2:2822178/1‑139 (MQ=2) aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt < 1:7004534/140‑1 (MQ=34) aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt < 2:311971/140‑1 (MQ=34) aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACAt < 1:5516360/140‑1 (MQ=34) aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCTGCAACCCCGGGCTCTGGCGAACAAAATCCGCCCAGCGCGGTGCCCACGGCATATCCCGTACGGCTACCCGGTCGGGCGCGAGGTAACAt > 2:7059965/1‑140 (MQ=11) tCACTGGCGCAAGGAGCGC‑GGAGGGGGCGGCCCAAAACCCCCGCCCCCAGCACCCCCCGGCTCATGCGGAAAAAAAAACCCCAGCGCGGTGCCCACCGCCTTTACCATAAGGCGAACCGGTAGGGCGCGAGGTAACaaac > 2:3336824/1‑137 (MQ=255) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAACACCCCCCCCCCCCGCCCACCCCGGCGCAGGCGACCAAAAACGCCGCGTCGCGGTGCCCGCCGCATAACCCATACGGCTACCCGGGCCGGCGCGAGGTAACaaac > 2:1650785/1‑137 (MQ=2) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCCAAAGCCCCCGCCCCCCGCCCCCCCCGGCACTGGCGAACAAAAACGCCCCGGCGCGGTGCCCACGGCGTATACCCTACCGCGACCCGGTCGGGCGCGCGGGAACAtac > 2:4785982/1‑138 (MQ=2) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATcc < 2:6768586/140‑1 (MQ=33) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATcc < 2:6768661/140‑1 (MQ=33) tCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATAGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCGGCGCGGTGCCCACGGCTTATACCTTACGGCTACCGGGTCGGGCGCGAGGTAACATcc > 2:5084517/1‑140 (MQ=11) tGGCGCAAGGAGCGC‑GCAGGGGGGGGCCCAAAGCCGCCGCCCCCAGCAACCCCGGGCTCTGTCGAACAAAAAAGCCCCGTCGCGGTGCCCTAGGCATATACCATAAGGCAACCGGGTCGGGCGCGAGGTAACCTCCCAGt > 2:833676/1‑140 (MQ=2) aGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgc < 2:8796130/140‑1 (MQ=32) cgc‑gcAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 2:1942375/140‑1 (MQ=32) aGGGGGCGGCCACTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:7283641/140‑1 (MQ=17) aGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 1:1857187/140‑1 (MQ=32) gggggCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc < 1:7504288/140‑1 (MQ=32) gggggCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGccc < 1:7504153/140‑1 (MQ=32) ggcggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 2:2613603/140‑1 (MQ=32) ggcCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 1:8918208/133‑1 (MQ=32) ccAATCGCCTCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAt > 2:230535/1‑140 (MQ=17) ccAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcg > 1:8147329/1‑120 (MQ=32) ccAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAt < 2:1145176/140‑1 (MQ=32) aTCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgtg > 1:1310290/1‑140 (MQ=32) tCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAGAACGCGCCCTCAGCCCACATCCATGTgg > 1:6245698/1‑140 (MQ=17) cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg > 2:6472204/1‑140 (MQ=32) cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg < 1:4833410/140‑1 (MQ=32) cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg < 2:6696401/140‑1 (MQ=32) cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTggg > 1:3544718/1‑140 (MQ=32) cgccgccgcCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTGATCCCGTACGGCAACCGGGTCGGGCGCGCGGTCACCTCCCTGTACCACGCGCCCTCCGCCCCCATCCATGTggg > 1:465643/1‑140 (MQ=11) ccgccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCt > 1:6777922/1‑140 (MQ=32) ccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcc > 2:9368447/1‑140 (MQ=32) ccgccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcc > 2:5413751/1‑140 (MQ=32) cgccCCCTGCACCCCCGGTCTCCGGCGCACACAATCGCCGCTGCGCCGTGCCCTCGGCTTATCCCTTACGGCTCCCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGccc < 2:7007615/140‑1 (MQ=11) gccCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcccc < 1:238284/140‑1 (MQ=32) cccccTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCg < 1:5376245/140‑1 (MQ=32) tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt > 1:1225775/1‑140 (MQ=32) tGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCtt > 2:4808818/1‑140 (MQ=32) cccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGa > 2:6161852/1‑140 (MQ=32) cccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGGGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTCACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGa > 2:4590699/1‑140 (MQ=17) ccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTACCATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGaa > 2:6040813/1‑140 (MQ=17) ccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcccc > 1:5676983/1‑127 (MQ=32) ccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGcccc < 2:5676983/127‑1 (MQ=32) ccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGac > 2:1860144/1‑139 (MQ=17) ccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGaa > 1:6457633/1‑140 (MQ=32) ccGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGaa > 1:9259770/1‑140 (MQ=32) cGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGacc > 2:9043106/1‑138 (MQ=17) cGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAAc > 1:3064981/1‑140 (MQ=32) cGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAAc > 1:7062619/1‑140 (MQ=32) cGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCGCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAAc > 1:4151968/1‑140 (MQ=17) | TGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGTGGGCTGCCCCGGCCTTCAGGGAAC > NZ_CP025268/2233111‑2233386 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |