BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,293,001	A→G	noncoding (36/132 nt)	CXP41_RS06835 ←	RtT sRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,293,001	0	A	G	99.4%	854.1 / NA	307	noncoding (36/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (124/181); minor base T (1/1); total (125/182)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 307 total aligned reads displayed.

TTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCG  >  NZ_CP025268/1292865‑1293133

ttGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCg                                                                                                                                   <  2:1532047/140‑1 (MQ=255)

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCGGCGGCCACGCTCGCTCGCAGACGCTCGAGCCGAACCATAGTCGa                                                                                                                                  >  1:134375/1‑140 (MQ=14)

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGa                                                                                                                                  >  2:8731691/1‑140 (MQ=14)

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCGTAGTCGa                                                                                                                                  >  2:500897/1‑140 (MQ=255)

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCGCGAGGCGAACCTTTGTCGa                                                                                                                                  >  1:8034514/1‑140 (MQ=14)

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                  <  1:4863737/140‑1 (MQ=255)

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                  <  1:6116315/140‑1 (MQ=255)

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                  <  1:2089994/140‑1 (MQ=255)

 tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                                  >  2:4021187/1‑140 (MQ=255)

 tGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGa                                                                                                                                  >  1:2687036/1‑140 (MQ=11)

 tGCGGATTCGATTGAGATTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGa                                                                                                                                  <  2:8465994/140‑1 (MQ=11)

  gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                 <  1:921700/140‑1 (MQ=255)

  gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                 <  2:3303112/140‑1 (MQ=255)

  gCGGATTAGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                                 <  2:7106591/140‑1 (MQ=255)

   cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCCACGCTCTCTCGCTGACGCTCGAGCCGAACCATAGTCGAAg                                                                                                                                >  1:7405285/1‑140 (MQ=14)

   cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCATCGGGTCGTTTCCTGAGGCAAAGCTCTCTCGCTGACCCACGAGCCGTAACTTATTCGTAg                                                                                                                                >  1:525009/1‑140 (MQ=14)

       ttCGTTTGAGTATTCCGGGGATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                                            <  1:7181085/140‑1 (MQ=255)

       ttCGTTTGAGACTTCGGGTGCTTTAGAAAGTGATGGTGGTGGGGGAAGGAGTACTCAGCGCTGCGCGCTTCGCCCTACTGGTCGTTGCCTGCGGCAACGCTCACTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                                            <  2:7470139/140‑1 (MQ=14)

       ttCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCGGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                                            <  1:1756275/140‑1 (MQ=255)

       gtCGTTTGAGAATTCCGGGGCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtc                                                                                                                            <  2:4426209/139‑1 (MQ=255)

        tCGATTGAGAGTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTtct                                                                                                                           <  1:4492257/140‑1 (MQ=11)

           tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                                        <  1:2482595/139‑1 (MQ=255)

                gaATTCCTGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTc                                                                                                                   <  2:5385027/140‑1 (MQ=255)

                  aTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTccc                                                                                                                 <  1:8338373/140‑1 (MQ=38)

                    tCCGGGGCTTGTGAAAGTGATGGTGGTGGGGGAAGGATTACTCTGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCCACGCGCTCTCGCTGACGCTCGAGGCGATCCTTAGTCGAAGCTTCACAGCCTTCCCCg                                                                                                               >  2:3081835/1‑140 (MQ=11)

                     ccGGGGCTTTTGATAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                              <  1:7470374/140‑1 (MQ=255)

                     ccGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                              >  2:241790/1‑140 (MQ=37)

                     ccGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                              <  1:1694750/140‑1 (MQ=37)

                      cGGGGCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                             <  1:656009/140‑1 (MQ=25)

                      cGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                             <  1:4691722/140‑1 (MQ=25)

                      cGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                             <  1:3187868/140‑1 (MQ=25)

                      cGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                             <  1:7059410/140‑1 (MQ=25)

                      cGGGGCTTTCGACAGTGAGGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                             <  2:6562675/140‑1 (MQ=255)

                      cGGGGCTTATGACAGTGTGGGTGGAGGGGTAAGGATTACTCCGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCa                                                                                                             <  2:1673235/140‑1 (MQ=11)

                          gattttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                                         <  2:5758078/138‑1 (MQ=17)

                            ttttGCAAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  2:3754857/140‑1 (MQ=12)

                            ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  1:7197468/140‑1 (MQ=17)

                            ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  1:4616913/140‑1 (MQ=17)

                            tttagtaaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                                       <  2:5143510/134‑1 (MQ=12)

                            ttatgccaGTGATGGGGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCACTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCACATCCTTCCCCGCATGGGCa                                                                                                       <  2:3608995/133‑1 (MQ=11)

                            tggagacaGTGATGGTGGAGGGGGCAGGATTCCTCACCGCGGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTGCCCCGCATGGGCa                                                                                                       <  2:8290397/133‑1 (MQ=11)

                              ttGTAAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                     <  2:4519853/140‑1 (MQ=12)

                              ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                     <  1:2717287/140‑1 (MQ=17)

                              ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                                     <  1:3986691/140‑1 (MQ=17)

                              ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATAGTCGAAGCTTCTCATCCTTACCCGCATGGGCAGa                                                                                                     >  2:5545245/1‑140 (MQ=12)

                                               gggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGAtt                                                                                    >  2:4871238/1‑140 (MQ=12)

                                                  ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGt                                                                                 >  2:9276470/1‑140 (MQ=2)

                                                     aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                                                >  2:883849/1‑90 (MQ=18)

                                                       gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                            <  2:1630194/140‑1 (MQ=255)

                                                        aTTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGCGTCGAACCTTGGTCGAAGCGTCTCATCCTTCCCCGCATGGGCCGTATATTTAATTGAGGATTGGTTgggga                                                                           >  1:3949684/1‑138 (MQ=11)

                                                            cTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTc                                                                       <  2:2010624/140‑1 (MQ=255)

                                                               aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGGAGAATATTTAATTGCGGATTCGTTTTGAAGTTCAgg                                                                    >  2:6436807/1‑140 (MQ=11)

                                                               aGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATACTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGTAGTTCAgg                                                                    >  1:1000690/1‑140 (MQ=11)

                                                                gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                                   <  1:9445277/140‑1 (MQ=255)

                                                                gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                                   <  2:6280194/140‑1 (MQ=255)

                                                                 cgcgGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCGGGCGCTCGAGTCGGACCTTGGTAGTAGCGTCTCAGCCGTCCCCGCGTGGGCAGACTATGTAATTGCGGATTCGGTGGGAAGGTCAgggg                                                                  >  2:4195146/1‑139 (MQ=2)

                                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCCGCAACGCACTCACGCTGTCGCTCAAGACGAACCTATGTCGAAGCTTCTCATCCATCCCCGCATCGGAAGAATATTTAATTGCTGATACGGTTGGAACTTAATGGa                                                                  >  2:2370293/1‑140 (MQ=2)

                                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGATTCGAACCATTGTCGAAGCTTCTCATCCTTCCCCGAATGGGCAGAATATTTAAATGCGGAGTCGGTGGGACGATCAGGGa                                                                  >  2:6993127/1‑140 (MQ=11)

                                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                                                  >  2:9368169/1‑140 (MQ=255)

                                                                 cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCACTCGCTGGCGCTCCAGTCGTACCGTGGTCGAAGCATCTCAACCATCCCCGCATGGGCAGAAAATTTAATTGCGGGGTCGTTGGGAAGTTCAGGGa                                                                  >  1:7306038/1‑140 (MQ=14)

                                                                  gcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCATCTCATCCTTCCCCGCATGGGGTGAATATTTAATTGCGGAGGCGTGGGGAAGTTGAGGGAc                                                                 >  2:269272/1‑140 (MQ=11)

                                                                    tGCGCGCTTCGCCCTTCGGGTCGTTGCCTTCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGATTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTGCGGAATCGGTGGGAAGTTCAGGGAcat                                                               >  2:1003464/1‑138 (MQ=11)

                                                                      cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTGGAGTCGAACGTTGGTCGTAGCTTCTCATCCGTCCCCGCGTGGGCAGTATATTTACTTGCGGTGTGGTGGGGAGGTTCAgggggggtg                                                             >  2:5819369/1‑134 (MQ=2)

                                                                      cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGGCGAAGCGTCTCATCCTTCCCCGCAGGGGGCGAATATTTAATTGCGGAGTGGTTGGGGAGTTCAGGGAcggtt                                                             >  1:8876668/1‑136 (MQ=11)

                                                                      cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                             >  2:4621766/1‑140 (MQ=14)

                                                                      cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCGCGAGTCGACCCTGGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAGTCGGTGGGACGTGCCGGGACtttt                                                             >  2:7773464/1‑140 (MQ=11)

                                                                         gcctCGCCCTGCGCGTCGGCGCCTGCGGCACCGATCTCTCGCGGGCGCTCGTGTAGAGCCTGGGTCGTAGATTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                                          <  2:9398819/137‑1 (MQ=9)

                                                                          cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                                         <  1:9276470/140‑1 (MQ=255)

                                                                          cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                                         <  2:3544473/140‑1 (MQ=255)

                                                                            tCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGt                                                       <  1:1979055/140‑1 (MQ=255)

                                                                              gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                                     <  1:8466305‑M1/140‑1 (MQ=255)

                                                                              gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAACTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCCGAATATTTAATTGCGGATTCGGTGGGACGTTCAGGGGCGTTTGTAAgggt                                                     >  1:7899565/1‑137 (MQ=11)

                                                                               cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT                                                    <  1:2530871‑M1/140‑1 (MQ=255)

                                                                                ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                                   <  2:5166954‑M1/140‑1 (MQ=255)

                                                                                ccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATG                                                   <  1:561637‑M1/140‑1 (MQ=255)

                                                                                 cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGG                                                  <  1:881633‑M1/140‑1 (MQ=255)

                                                                                   tCGGGTCGTTGCCTGCGGGAACGCTCGCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCCGACTATTTAATTGCGGTTGCGGTGGGAAGGTCAGGGACTTTTGAAAGTGAtggtg                                                >  2:3321107/1‑140 (MQ=11)

                                                                                   tCGGGTCGTTGCCTGCGGCTACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGACGGTTCTCATCCTTCCCCGCTTGGGCCGCATATTAAATTGCGGATTCTTTGGGAAGGTCAGGGACTGTGGAAAGTGAtggtg                                                >  2:5924991/1‑140 (MQ=14)

                                                                                   tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCGTGGGCAGAAAATTTAATTGCGGATTCGTTGGGTAGTTCAGGGCCTTTTGAAAGGGATGGTG                                                >  2:3978294‑M1/1‑140 (MQ=255)

                                                                                     gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGTTTAGTGGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGT                                              >  2:2188679‑M1/1‑140 (MQ=255)

                                                                                      ggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTG                                             <  1:867927‑M1/140‑1 (MQ=255)

                                                                                           ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAGCTTGGTCGATTCTTCTCTTCCTTCCCATCATGGGAATTATATTTTATTGCGGATTCGTTGGTTATTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGa                                        <  1:938939/140‑1 (MQ=11)

                                                                                           ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCCTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                        <  1:665026‑M1/140‑1 (MQ=255)

                                                                                           ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                                        <  1:861249‑M1/140‑1 (MQ=255)

                                                                                                  cGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGTTGGTGGTGGGGGAAGGATTc                                 >  2:8045856‑M1/1‑139 (MQ=255)

                                                                                                    gCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCAACCTTCCCCGCAGGGGCCTAATATTTAATTGCGGAGTGGTTGTGACGGTCAGCGACGTTTGAAAGTGATGGTGGTGGGGGTAGGAttcga                               >  2:4054032/1‑137 (MQ=11)

                                                                                                           tctctcGCTGCCGCTCGAGCCGAACCTTCGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT‑GTGGTGGGGGAAGGATTcgaaccttcga                       <  1:1826207‑M1/140‑12 (MQ=255)

                                                                                                             tctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAAGTGCGGATTCGTTGGGAAGGTCAGGGACGTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaa                      >  1:3467738‑M1/1‑128 (MQ=255)

                                                                                                              ctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaag                     <  1:2994583‑M1/140‑14 (MQ=255)

                                                                                                               tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGACGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagt                    >  2:7347418‑M1/1‑126 (MQ=255)

                                                                                                               tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagt                    >  2:272507‑M1/1‑126 (MQ=255)

                                                                                                                     gcgCTCGAGTCGAACCTTGGTCGAAGCTTCTCATACTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTAAGGGACATTTGAAAGTTTTGGTGGTGGGGGAAGGATTcgaaacatcgaagtcgaaga              >  1:4293875‑M1/2‑120 (MQ=255)

                                                                                                                      cGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGCCTTTTGAAAGGGAGGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgac             >  2:9080835‑M1/1‑119 (MQ=255)

                                                                                                                         tCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccgacgaagtcgatgacggc          >  2:3025388‑M1/1‑116 (MQ=255)

                                                                                                                          caagtcgaaccTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:3308986‑M1/135‑26 (MQ=255)

                                                                                                                          cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  1:5011562‑M1/140‑26 (MQ=255)

                                                                                                                          cGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  2:6060202‑M1/140‑26 (MQ=255)

                                                                                                                          cGAGTCGAACCTTGGTCGAAGCGTCTCATCCTTCCCCGCTTGGGCATAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggca         <  2:143130‑M1/140‑26 (MQ=255)

                                                                                                                                 aaCCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGTAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac  <  1:9002390‑M1/140‑33 (MQ=255)

                                                                                                                                 aaCCTTGGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatgacggcagatttac  <  2:7259742‑M1/140‑33 (MQ=255)

TTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCG  >  NZ_CP025268/1292865‑1293133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`