BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,549,203	T→C	pseudogene (1331/1331 nt)	CXP41_RS08190 ←	leucine‑rich repeat domain‑containing protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,549,203	0	T	C	100.0%	701.1 / NA	202	pseudogene (1331/1331 nt)	CXP41_RS08190	leucine‑rich repeat domain‑containing protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (65/137); total (65/137)

Only 100 of 202 total aligned reads displayed.

GCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCATTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACTT  >  NZ_CP025268/1549069‑1549333

gCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTaaaa                                                                                                                               <  1:6725747/140‑1 (MQ=255)

  tAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAg                                                                                                                             >  2:398015/1‑140 (MQ=255)

    aCCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGTTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGc                                                                                                                           >  1:4944976/1‑140 (MQ=255)

        tCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATg                                                                                                                       <  1:852818/140‑1 (MQ=255)

          aaaCGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGaa                                                                                                                     <  2:9229065/140‑1 (MQ=255)

                ggTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTggag                                                                                                               >  2:5570942/1‑140 (MQ=255)

                ggTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTggag                                                                                                               >  1:4467370/1‑140 (MQ=255)

                         ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                      <  1:5908649/140‑1 (MQ=255)

                         ttGAACGTATGTCATGATTCAACCCTTCACATCGTCAATCTAAAGGCTTACATATTAACTATATTATCAACCAGCCCAGACACTTATACAATTCGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                      <  2:1344665/140‑1 (MQ=255)

                          tGATCGTATGTCTTGTTTCAACCTTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                                     <  2:8939731/140‑1 (MQ=255)

                          tGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                                     <  1:7308032/140‑1 (MQ=255)

                          tGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACGGGAGGAAAACGATc                                                                                                     <  1:4387671/140‑1 (MQ=255)

                          agAACGTATGTCATGTTTCAACCCTTCAGAACGTGAAACTAAAGTGTTACATATTAACGATATTATCAACAAGACCAGACACGAATAGAATGAGTGAGGCATTCGGCACTAACACGGCCATGAACAGGAGGAACACGaac                                                                                                     <  2:7942611/139‑3 (MQ=255)

                                 aTGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAg                                                                                              <  2:3364550/140‑1 (MQ=255)

                                  tGTCATGTTTCAACCCTTCAGATCGTGAATCTAACGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                             <  2:2997890/140‑1 (MQ=255)

                                  tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTAGATATTAACTATATTATCAACAAGACCAGACAATTATAGAATTAGTGTTGATTTATTCACTAAATCGGACATGAACTGGAGGAAAACGATCTGTCCAgt                                                                                             <  2:3081038/140‑2 (MQ=255)

                                  tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                             <  2:4647376/140‑1 (MQ=255)

                                  tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                             <  1:8407602/140‑1 (MQ=255)

                                  tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                             <  1:1214902/140‑1 (MQ=255)

                                  tGTCATGTTTCAACCCTTCAGATAGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                             <  1:6638378/140‑1 (MQ=255)

                                    tCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAg                                                                                           <  2:7347111/140‑1 (MQ=255)

                                      aTGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                                         <  2:5182255/140‑1 (MQ=255)

                                      aTGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                                         <  2:4564960/140‑1 (MQ=255)

                                         tttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTa                                                                                      >  2:8911144/1‑140 (MQ=255)

                                              ccccTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGt                                                                                 <  2:6390823/139‑1 (MQ=255)

                                              aCCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGt                                                                                 <  2:4685773/140‑1 (MQ=255)

                                                ccTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTc                                                                               <  2:1809162/140‑1 (MQ=255)

                                                ccTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACAGGAGGAAAACGAACTGTCCAGAAGGTCTATCGGTTc                                                                               <  1:3007371/140‑1 (MQ=255)

                                                  ttCAGATCTTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                             <  1:1745190/140‑1 (MQ=255)

                                                  ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                             <  2:3208145/140‑1 (MQ=255)

                                                  ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                             <  2:2782326/140‑1 (MQ=255)

                                                  ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                             <  2:4384312/140‑1 (MQ=255)

                                                  ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                             <  2:6028335/140‑1 (MQ=255)

                                                  ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                             <  2:8820975/140‑1 (MQ=255)

                                                   tCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGcc                                                                                                                          <  1:7871732/94‑1 (MQ=255)

                                                   tCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGcc                                                                                                                          >  2:7871732/1‑94 (MQ=255)

                                                      gATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCctctct                                                                         <  2:6927587/140‑1 (MQ=255)

                                                         cGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTAt                                                                      >  1:6452279/1‑140 (MQ=255)

                                                           tGACTCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTg                                                                    >  2:6578601/1‑140 (MQ=255)

                                                           tGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTg                                                                    >  1:2255371/1‑140 (MQ=255)

                                                            gAATCTAAATGTTTACATATTATCTATATTAACAAACATACCAGAAACTTATAGAATTAGTGATGATTTATTCACTAAAAATGCCATGAAATGGAGGTAAACGATCTGTCCAGTAGGTATATCGGTTCCTCTCTTATTGc                                                                   <  2:6694321/140‑1 (MQ=255)

                                                            gAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGc                                                                   <  1:9322631/140‑1 (MQ=255)

                                                            gAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGc                                                                   <  1:739421/140‑1 (MQ=255)

                                                              aTCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCt                                                                 <  1:9104776/140‑1 (MQ=255)

                                                                cTAAAGGGTTACATATTAACTATATTATCAACAATACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGa                                                               <  2:3141116/140‑1 (MQ=255)

                                                                cTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGa                                                               <  2:2258077/140‑1 (MQ=255)

                                                                        ttACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                       >  1:8192878/1‑140 (MQ=255)

                                                                        taaCATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                       <  1:7448761/138‑1 (MQ=255)

                                                                         tACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGt                                                                                 >  2:452224/1‑113 (MQ=255)

                                                                          aCATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                     <  2:4944976/140‑1 (MQ=255)

                                                                          aCATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                     <  2:8599336/140‑1 (MQ=255)

                                                                          aCATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTCGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                     <  1:410904/140‑1 (MQ=255)

                                                                          aCATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACGGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                     <  1:7506498/140‑1 (MQ=255)

                                                                          aCATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGAATTATTCACTAAAAAGGCCATGACCTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                     <  1:7729191/140‑1 (MQ=255)

                                                                           cATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGTTTCCTCTCTTATTGCCTGATTGTAATAATc                                                    >  2:1949452/1‑140 (MQ=255)

                                                                              atTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtt                                                 <  2:5973598/140‑1 (MQ=255)

                                                                               ttAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                <  1:2863632/140‑1 (MQ=255)

                                                                               ttAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                <  1:7351132/140‑1 (MQ=255)

                                                                                tAACTATATTATCAACCAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACAGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                                               <  2:376997/140‑1 (MQ=255)

                                                                                tAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                                               >  2:5983474/1‑140 (MQ=255)

                                                                                 aaCTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                      >  1:5599166/1‑84 (MQ=255)

                                                                                 aaCTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttatt                                              <  1:3562367/140‑1 (MQ=255)

                                                                                 aaCTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCATCTCTTATTGCCTGATTGTAATAATCGttatt                                              >  2:843583/1‑140 (MQ=255)

                                                                                    tataTTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAACGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACa                                           <  2:806936/140‑1 (MQ=255)

                                                                                    tataTTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACa                                           <  2:8102965/140‑1 (MQ=255)

                                                                                      tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                         <  2:5277372/140‑1 (MQ=255)

                                                                                      tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                         <  2:5277678/140‑1 (MQ=255)

                                                                                      tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                         <  1:5266448/140‑1 (MQ=255)

                                                                                         tatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAgg                                                                                          >  2:8715708/1‑88 (MQ=255)

                                                                                              acaaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTg                                                                    <  2:3249214/105‑1 (MQ=255)

                                                                                              acaaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGc                                                                   <  1:8964320/106‑1 (MQ=255)

                                                                                                aaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAAc                                                                                                                    >  2:1974322/1‑55 (MQ=255)

                                                                                                aaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAAc                                                                                                                    <  1:1974322/55‑1 (MQ=255)

                                                                                                  gACCAGACACTTATAGAATTAGTGATGATTTATTCACTaaaa                                                                                                                               <  1:5478530/42‑1 (MQ=255)

                                                                                                  gACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCgg                                                                                  <  2:5488109/87‑1 (MQ=255)

                                                                                                   aCCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtt                                                 <  1:3942299/119‑1 (MQ=255)

                                                                                                    ccAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAtt                           <  2:4428601/140‑1 (MQ=255)

                                                                                                    ccAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAtt                           <  1:9055232/140‑1 (MQ=255)

                                                                                                     cAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCTGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAttt                          >  1:3218310/1‑140 (MQ=255)

                                                                                                       gACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                <  2:1173397/116‑1 (MQ=255)

                                                                                                             tataGAATTAGTGATGATTTATTCACTGAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttatt                                              <  1:8669265/112‑1 (MQ=255)

                                                                                                             tataGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAg                  >  2:8380864/1‑140 (MQ=255)

                                                                                                              ataGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                     >  1:4613816/1‑104 (MQ=255)

                                                                                                              ataGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                <  2:4822169/109‑1 (MQ=255)

                                                                                                              ataGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                >  1:4822169/1‑109 (MQ=255)

                                                                                                                aGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTc               <  1:1787939/140‑1 (MQ=255)

                                                                                                                    ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTc                                                                               <  1:3307982/72‑1 (MQ=255)

                                                                                                                    ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCg                                                   <  2:2739843/100‑1 (MQ=255)

                                                                                                                    ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCg                                                   >  1:2739843/1‑100 (MQ=255)

                                                                                                                    ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGt           >  2:575628/1‑140 (MQ=255)

                                                                                                                    ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGt           >  2:3312350/1‑140 (MQ=255)

                                                                                                                      aGTGATGATTTATTTACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                         >  2:7151749/1‑108 (MQ=255)

                                                                                                                      aGTGATGATTTATTTACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                         <  1:7151749/108‑1 (MQ=255)

                                                                                                                      aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTc                                                                               <  2:7529595/70‑1 (MQ=255)

                                                                                                                      aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTc                                                                               >  1:7529595/1‑70 (MQ=255)

                                                                                                                      aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTAc                                            <  1:1024432/105‑1 (MQ=255)

                                                                                                                      aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAtt                           >  2:7403077/1‑122 (MQ=255)

                                                                                                                      aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTATCTTATAGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGttt         >  2:8976059/1‑140 (MQ=255)

                                                                                                                            gatTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                <  2:8270527/95‑1 (MQ=255)

                                                                                                                            gatTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                >  1:8270527/1‑95 (MQ=255)

GCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCATTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACTT  >  NZ_CP025268/1549069‑1549333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`