| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,624,777 | A→G | *128* (TAA→TAG) | marA → | MDR efflux pump AcrAB transcriptional activator MarA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,624,777 | 0 | A | G | 99.8% | 1916.8 / NA | 554 | *128* (TAA→TAG) | marA | MDR efflux pump AcrAB transcriptional activator MarA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (305/247); minor base T (1/0); total (306/248) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 554 total aligned reads displayed.
CGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAATTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTC > NZ_CP025268/1624640‑1624913 | cGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGtt > 1:1170416/1‑140 (MQ=255)cGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGtt > 2:5218827/1‑140 (MQ=255)cGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGtt > 2:1918757/1‑140 (MQ=255)cGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGtt > 2:173756/1‑140 (MQ=255) ctatGGCTTCGAGTCGCAACAAACTCTGACCCGACCCTTCAAAAAGTACTTTGATGTTCCGCCGCCTAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGa < 2:9390687/139‑1 (MQ=255) cTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGt > 2:2727137/1‑140 (MQ=255) cTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATGACTTTGATGTTCCGCCGCATACATACCGGATGACCAAGATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCCTTACAACAGCTAGTTGAAAACGt < 2:9280819/140‑1 (MQ=255) tCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGa < 1:8969751/140‑1 (MQ=255) cGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGAc < 1:5862408/140‑1 (MQ=255) cGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGGTGAAAACGTGAc > 1:3980718/1‑140 (MQ=255) gAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACa < 1:5053000/140‑1 (MQ=255) aGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACaa > 1:3664090/1‑140 (MQ=255) aGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACaa < 2:2224352/140‑1 (MQ=255) aGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGAGACaa > 2:1855586/1‑140 (MQ=255) tCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACg < 2:898777/140‑1 (MQ=255) aCTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAgg > 2:1506140/1‑140 (MQ=255) ctctGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGc < 2:4697226/140‑1 (MQ=255) tctGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCCGGGCGAATCGCGC‑ATTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCa < 2:4504683/140‑1 (MQ=255) gACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCACTc > 2:5685770/1‑140 (MQ=255) gACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATc > 1:3125497/1‑140 (MQ=255) gACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATc > 1:7970401/1‑140 (MQ=255) cccGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCAt > 2:296008/1‑140 (MQ=255) cGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGa < 2:3159265/140‑1 (MQ=255) aaCCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGaaa > 2:7245336/1‑140 (MQ=255) aCCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAAc < 1:8593937/140‑1 (MQ=255) cTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCa > 2:2873987/1‑140 (MQ=255) cTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCa < 2:7886947/140‑1 (MQ=255) tCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATGAAATCATTACAACAGCGAGTGGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCAcg > 2:8798034/1‑139 (MQ=255) caaTTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATCTGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCa < 2:2403977/139‑1 (MQ=255) aTTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATc < 1:3517808/140‑1 (MQ=255) aTTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATc > 1:2371403/1‑140 (MQ=255) aTTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATc < 2:7761587/140‑1 (MQ=255) ttGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAAt < 1:1781507/140‑1 (MQ=255) ttGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAAt < 1:2714007/140‑1 (MQ=255) ttCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATagcagc < 1:4181028/140‑1 (MQ=255) ccgcATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTgcgc < 2:3282627/140‑1 (MQ=255) gcATAAATACCGGTTGACCAATATGCAGGGCGAATCGCGC‑TTTTAACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCtt > 1:6307390/1‑140 (MQ=255) cGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCtttt < 2:2158799/140‑1 (MQ=255) cGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCtttt < 1:1571568/140‑1 (MQ=255) ggATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTc < 1:4827888/140‑1 (MQ=255) ggATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTAAAACAGCTATTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCAGCGCTTATTCTCTTTTc > 2:6476302/1‑140 (MQ=255) gATGACCAATATGCAGGGCGAATCGCGCTTTTTTACATCCATTAATTCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGTGGCAATCATTAAACCACTTTCATCCGAAATAGCAGCTGCGCTTTTTCTCTTTTc > 1:7052145/1‑140 (MQ=255) aCCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCgcgc > 1:7136987/1‑140 (MQ=255) aCCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCgcgc > 2:5891256/1‑140 (MQ=255) ccAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCa < 2:7963038/140‑1 (MQ=255) ccAAGATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCa < 2:2534600/140‑1 (MQ=255) atatGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACATCTAGTTGAAATCGTGACAACGTCACTGAGGCAATCATGAACCCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAggg < 1:554300/140‑1 (MQ=255) atatGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAggg < 1:4614460/140‑1 (MQ=255) atatGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAggg < 1:8407767/140‑1 (MQ=255) atatGCAGGGCGAATCGAGC‑TTTTTACATCCTTGAAATCCTTTCAACAGCTAGTTGATAACTTGACTCCGTCACTGAGGCAATCATGAAAACTCTTTGATCCGCAATAGCATCTGCGCTTTTTCTCTTTTCCTCGCAggg < 2:101511/140‑1 (MQ=255) gCAGGGCGAATCGCGC‑TTTTTACATCAATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGCCAATCATGAAACCACGTTCATCCGCAATAGCAGCTGCGCTTATTCTCATTTCCGCGCAGGGCGtt < 2:545383/140‑1 (MQ=255) cAGGGCGAATCGCGC‑TTATTACATCCATGAAATCCTTACACCAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCACGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTg < 2:8518062/140‑1 (MQ=255) aGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGc > 1:537941/1‑140 (MQ=255) aGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGc > 1:8160085/1‑140 (MQ=255) ggCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCgg > 1:2939204/1‑140 (MQ=255) ggCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCgg > 2:3971634/1‑140 (MQ=255) ggCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCgg > 1:219467/1‑140 (MQ=255) ggCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCgg > 1:6044266/1‑140 (MQ=255) ggCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCgg > 1:6953951/1‑140 (MQ=255) ggCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCgg > 2:752046/1‑140 (MQ=255) ggCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCgg > 1:1450086/1‑140 (MQ=255) ggCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCgg > 2:126839/1‑140 (MQ=255) ggCGAATCGCGC‑TTTTTACATCCATAAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGAGCAGGGCGATGCgg > 2:6308759/1‑140 (MQ=255) gCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGa > 2:4255438/1‑140 (MQ=255) gCGAATCGCGC‑ATTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGa < 1:7509296/140‑1 (MQ=255) aaTCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACa < 2:6060511/140‑1 (MQ=255) aaTCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACa > 1:9251909/1‑140 (MQ=255) aTCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACaa > 1:3771063/1‑140 (MQ=255) c‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACg > 2:6891359/1‑140 (MQ=255) c‑TTTTTACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACg < 2:3657752/140‑1 (MQ=255) ttACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGc < 1:2083996/140‑1 (MQ=255) tACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGcc < 1:1018059/140‑1 (MQ=255) tACATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGcc < 1:733235/140‑1 (MQ=255) cATCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAg < 1:7560456/140‑1 (MQ=255) aTCCATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAgt > 1:4404616/1‑140 (MQ=255) cATTAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAgttgt > 1:8790895/1‑140 (MQ=255) ttAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTa > 2:3527501/1‑140 (MQ=255) ttAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTa < 2:7136987/140‑1 (MQ=255) ttAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTa > 2:9170447/1‑140 (MQ=255) ttAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTAGTTa > 2:6773919/1‑140 (MQ=255) atAAATCATTACAACAGCTAGTTGAAAACGTGACAACGACACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTa > 2:2037694/2‑140 (MQ=255) tAAATCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTAc > 1:6676807/1‑140 (MQ=255) aTCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTActtc < 1:5162515/140‑1 (MQ=255) aTCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTActtc < 2:4995782/140‑1 (MQ=255) tCATTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTActtct < 2:4915639/140‑1 (MQ=255) aTTACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTtg < 1:1340665/140‑1 (MQ=255) tACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTtgtg > 2:1338652/1‑140 (MQ=255) tACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTtgtg > 2:4146935/1‑140 (MQ=255) tACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTtgtg > 1:5701322/1‑140 (MQ=255) tACAACAGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTGGCGGAACAAACCACGCAGCCAGTTGTTACTTCTtgtg > 2:8112685/1‑140 (MQ=255) cccaGCTAGTTGAAACCCTGACAACGTCTCTCAGGCAATCTTGCACCCACTTTCATCCTCAATAGCAGCTGCGCTTATTCTCTTTTCCGAGCAGGGCGTTGCGGAACAACCCAGGCAGGCAGTTTTTACTTCTTGTGCCa < 2:7687363/138‑1 (MQ=255) cacaGCTAGGTGAAAACGTGACAACGTCACTGAGGCAAGCTTGAAACCACTGTCATCCGCAATCGCAGCTGCGCTTATTCTCTTGTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGGTGTTACTTCTTGTGCCa < 2:3814312/139‑1 (MQ=255) acaGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCGCGCAGCCAGTTGTTACTTCTTGTGCCaa < 1:4084196/140‑1 (MQ=255) acaGCTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCaa < 1:6459845/140‑1 (MQ=255) cTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTc > 1:1988007/1‑140 (MQ=255) cTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTc > 2:838850/1‑140 (MQ=255) cTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTc > 1:7809175/1‑140 (MQ=255) cTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTc > 1:8483030/1‑140 (MQ=255) cTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTc > 2:391872/1‑140 (MQ=255) cTAGTTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTc > 2:5344528/1‑140 (MQ=255) | CGATATGGCTTCGAGTCGCAACAAACTCTGACCCGAACCTTCAAAAATTACTTTGATGTTCCGCCGCATAAATACCGGATGACCAATATGCAGGGCGAATCGCGC‑TTTTTACATCCATTAAATCATTACAACAGCTAATTGAAAACGTGACAACGTCACTGAGGCAATCATGAAACCACTTTCATCCGCAATAGCAGCTGCGCTTATTCTCTTTTCCGCGCAGGGCGTTGCGGAACAAACCACGCAGCCAGTTGTTACTTCTTGTGCCAATGTC > NZ_CP025268/1624640‑1624913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |