BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	3,266,812	T→C	313 (TAA→TAG)	tdcA ←	transcriptional regulator TdcA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	3,266,812	0	T	C	100.0%	464.4 / NA	138	313 (TAA→TAG)	tdcA	transcriptional regulator TdcA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (75/63); total (75/63)

Only 100 of 143 total aligned reads displayed.

ATCAATAGCAACCGGCAGATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAATTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCATATTGTGCCACAGGT  >  NZ_CP025268/3266678‑3266947

atcaATAGCAACCGGCAGATCGTATGTCATATGCATTATCAAACCTCTTCGCCTGAATTAAATATTTAGGTAACCGGAACCGACACCTGCAAGACCGACAGGTGGATTATTTATGTGTAAATAAAAACAAATAACTaaac                                                                                                                                    >  2:8193315/1‑138 (MQ=255)

atcaATAGCAACCGGCAGATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAAcc                                                                                                                                    <  2:2022683/140‑1 (MQ=255)

atcaATAGCAACCGGCAGATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAAcc                                                                                                                                    <  2:6911042/140‑1 (MQ=255)

atcaATAGCAACCGGCAGATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAAcc                                                                                                                                    <  1:2355907/140‑1 (MQ=255)

      aGCAACCGGCAGATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTc                                                                                                                              <  2:8043502/140‑1 (MQ=255)

        cAACCGGCAGATCGTATGAAATATGCATTATAAAAACTCTTCGCGTGAATTAAATTTTTAGGTAAACTTAACCGACACATGAAAGACATACAGGTGGATAATTTATTTTTAAATAAAATCAAATAACTAAGAAAATTCTa                                                                                                                            >  2:1998448/1‑140 (MQ=255)

          aCCGGCAGATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTAtt                                                                                                                          >  2:534112/1‑140 (MQ=255)

            cGGCAGATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTaa                                                                                                                        <  2:7537970/140‑1 (MQ=255)

             ggCAGATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAAt                                                                                                                       >  1:2700606/1‑140 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTACATATGTCGGTAACCGTAACCGCCACCTGCAAGACAGACAGGTGGATTATTTATGATTAAATAAAAACAAATAACTAAACAACTTCTATTAATTGcc                                                                                                                   <  2:2020958/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGcc                                                                                                                   <  1:4628064/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGcc                                                                                                                   <  1:3554142/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGcc                                                                                                                   <  1:5892084/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGcc                                                                                                                   <  1:6209214/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGcc                                                                                                                   <  1:2917498/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGcc                                                                                                                   <  1:7809242/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGcc                                                                                                                   <  1:7809474/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTATATTAATTGcc                                                                                                                   <  2:1152968/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTAAGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGcc                                                                                                                   <  2:2547590/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGAATATTTATGTTTAAATAAAACCAAATAACTATACATCTTCTTTTAATTGcc                                                                                                                   <  2:7963195/140‑1 (MQ=255)

                 gATCGTATGTAATATGCATGATAAACCCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGcc                                                                                                                   <  2:7861354/140‑1 (MQ=255)

                  ctCGTATGTAATAAGCATTATAAAACCTCTTCGCCAGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCt                                                                                                                  <  2:7428303/139‑1 (MQ=255)

                  aTCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCt                                                                                                                  <  2:3404915/140‑1 (MQ=255)

                  aTCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCt                                                                                                                  <  1:4716227/140‑1 (MQ=255)

                  aTCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCt                                                                                                                  >  2:4069438/1‑140 (MQ=255)

                        tGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCt                                                                                                            <  1:546110/140‑1 (MQ=255)

                         gTAATATTCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTa                                                                                                           <  2:7228585/140‑1 (MQ=255)

                         gTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTa                                                                                                           >  1:4253495/1‑140 (MQ=255)

                         gTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTa                                                                                                           <  2:7228471/140‑1 (MQ=255)

                           aaTATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGGTTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTgca                                                                                                         <  2:6977259/140‑1 (MQ=255)

                           aaTATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTaca                                                                                                         <  1:7449369/140‑1 (MQ=255)

                            atatGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTacac                                                                                                        <  1:1388867/140‑1 (MQ=255)

                             tatGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCCAGACAGACAGGTGGATTATTTATGTGTAAATAAACACCAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACAcc                                                                                                       >  2:2626771/1‑140 (MQ=255)

                             tatGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCACCTTCTATTAATTTCCTTCGTCTACAcc                                                                                                       >  2:7047236/1‑140 (MQ=255)

                             tatGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACAcc                                                                                                       >  1:7552584/1‑140 (MQ=255)

                              atGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACAccc                                                                                                      <  1:4567537/140‑1 (MQ=255)

                               tGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATATCTAACCAACTTATATTTATTGCCTTCGTCTACACCCa                                                                                                     <  2:9008996/140‑1 (MQ=255)

                                gCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCAt                                                                                                    >  1:7233560/1‑140 (MQ=255)

                                 cATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCAtt                                                                                                   >  1:6420053/1‑140 (MQ=255)

                                 cATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCAtt                                                                                                   >  2:5572055/1‑140 (MQ=255)

                                 cATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCAtt                                                                                                   >  2:936735/1‑140 (MQ=255)

                                  aTTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATta                                                                                                  >  1:5989466/1‑140 (MQ=255)

                                  aTTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATta                                                                                                  >  1:5711828/1‑140 (MQ=255)

                                   ttATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATtat                                                                                                 <  1:5572055/140‑1 (MQ=255)

                                    tataAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATtata                                                                                                >  1:910828/1‑140 (MQ=255)

                                    tataAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATtata                                                                                                >  1:1874686/1‑140 (MQ=255)

                                    tataAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATtata                                                                                                >  1:5219605/1‑140 (MQ=255)

                                     ataAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATaa                                                                                               <  1:2815829/140‑1 (MQ=255)

                                     ataAAACCTCGTCGCCTTAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTAAATATGTTTAAATAAAAACAAATAACTAACCAACTTATATTAATTGCCTTCGTCTACACCCATTATaa                                                                                               <  2:6340748/140‑1 (MQ=255)

                                           ccTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGCCAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGaa                                                                                         <  2:6470629/140‑1 (MQ=255)

                                           ccTCTGCGCCTGAATGACATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGaa                                                                                         <  1:8449039/140‑1 (MQ=255)

                                              ctTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTCACCAACTTCTAGTAATTGACTTCGTCTACACCCATTATAAGATGAATAc                                                                                      >  2:4394184/1‑140 (MQ=255)

                                              ctTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATAc                                                                                      >  1:8937758/1‑140 (MQ=255)

                                              ctTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATAc                                                                                      >  2:4705267/1‑140 (MQ=255)

                                                          tcaaTATGTAGGTCACCGTAACCGACACCCGCAACACCGACACGTGGATTATTTAAGTTTAAATAAAACCACAGAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAAt                                                                          <  2:8775779/138‑1 (MQ=255)

                                                          tAAATATGTAGGTAACCGTAACCGACACCAGCCAGACCGACAGGTGGATTATTTATGATTAAATAAAAACAACTAACTAACCATCTTCAATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAAt                                                                          <  2:5719060/140‑1 (MQ=255)

                                                          tAAATATGTACGAAACCGTAACCGACACCTGCAACACAGACAGGTGGATTATTTATGTATAAATAAAAACAAATAACTAACCAACTTCTATTCATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAAt                                                                          <  2:8775783/140‑1 (MQ=255)

                                                                 gTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTccacca                                                                   >  2:5219527/1‑140 (MQ=255)

                                                                 gTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTccacca                                                                   >  2:9429152/1‑140 (MQ=255)

                                                                 gTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTccacca                                                                   >  1:301004/1‑140 (MQ=255)

                                                                 gTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTccacca                                                                   >  1:6980807/1‑140 (MQ=255)

                                                                      taaccgtaaccgACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAAcc                                                              >  1:7801217/1‑140 (MQ=255)

                                                                       aaccgtaaccgACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCg                                                             >  1:9452970/1‑140 (MQ=255)

                                                                        accgtaaccgACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAATCAAATAACTAACCAACTTCTCTTAATTGCCTTCGTCTACACCCATTAGAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGa                                                            >  2:4963460/1‑140 (MQ=255)

                                                                        accgtaaccgACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGa                                                            >  2:7146072/1‑140 (MQ=255)

                                                                            taaccgACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGAtgct                                                        >  1:226100/1‑140 (MQ=255)

                                                                                    acCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCtttttt                                                >  1:4355902/1‑140 (MQ=255)

                                                                                         cAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATActct                                                                                   >  1:5748050/1‑100 (MQ=255)

                                                                                         cAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATActct                                                                                   <  2:5748050/100‑1 (MQ=255)

                                                                                              cagacagGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATaa                                      >  2:35904/1‑140 (MQ=255)

                                                                                               agacagGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAAt                                     <  2:1784290/140‑1 (MQ=255)

                                                                                                gacagGTGGATTATTTATGTTTAAATAAAATCAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACAACCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAAtt                                    >  2:4823142/1‑140 (MQ=255)

                                                                                                gacagGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAAtt                                    >  1:2484770/1‑140 (MQ=255)

                                                                                                gacagGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAAtt                                    >  1:4112603/1‑140 (MQ=255)

                                                                                                gacagGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAAtt                                    >  2:44285/1‑140 (MQ=255)

                                                                                                 acagGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAAttt                                   >  1:135667/1‑140 (MQ=255)

                                                                                                 acagGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAAttt                                   >  1:8603832/1‑140 (MQ=255)

                                                                                                   agGTGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAAttttt                                 >  1:1560581/1‑140 (MQ=255)

                                                                                                      tGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGa                              >  1:393888/1‑140 (MQ=255)

                                                                                                      tGGATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGa                              >  2:923838/1‑140 (MQ=255)

                                                                                                       ggATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGAc                             >  1:2006024/1‑140 (MQ=255)

                                                                                                        gATTATTTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGAGGCTGCTTTTTTAATACGATAATTTTTCGAcc                            >  1:3182766/1‑140 (MQ=255)

                                                                                                         attattTATGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATGGCCGTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTGCACCAAAACCGATGATGCTTTTTTAATAAGATAATTTTTCGAcaa                           >  2:6758365/1‑138 (MQ=255)

                                                                                                           tatttatGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATa                         >  1:536475/1‑140 (MQ=255)

                                                                                                             tttatGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCtt                                                                                                                 >  2:1615491/1‑50 (MQ=255)

                                                                                                             tttatGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCtt                                                                                                                 <  1:1615491/50‑1 (MQ=255)

                                                                                                             tttatGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATAcc                       >  1:7367476/1‑140 (MQ=255)

                                                                                                                atGTTTAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACcgcg                    <  2:8611945/140‑1 (MQ=255)

                                                                                                                   tttAAATAAAAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCa                 <  1:3620113/140‑1 (MQ=255)

                                                                                                                   tttAAATAAAAACAAATAACTAACCAACTTCTATTAATCGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCa                 >  2:4852759/1‑140 (MQ=255)

                                                                                                                     taaataaaAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCata               >  2:6101894/1‑140 (MQ=255)

                                                                                                                     taaataaaAACAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCata               >  1:1928778/1‑140 (MQ=255)

                                                                                                                     taaataaaAACAAATAACTAACCAACTTCTACTAATTGCCCTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCata               <  1:8164612/140‑1 (MQ=255)

                                                                                                                             aaCAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCATATTGTGCca       <  1:923838/140‑1 (MQ=255)

                                                                                                                             aaCAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCATATTGTGCca       <  2:2700606/140‑1 (MQ=255)

                                                                                                                             aaCAAATAACTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCATATTGTGCca       <  2:2699882/140‑1 (MQ=255)

                                                                                                                              aCAAATAACTAACCAACTTCTAGTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCATATTGTGCcac      <  1:7897103/140‑1 (MQ=255)

                                                                                                                                  ataacTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCATATTGTGCCACAGGt  <  1:2608278/140‑1 (MQ=255)

                                                                                                                                  ataacTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCATATTGTGCCACAGGt  <  1:2608300/140‑1 (MQ=255)

                                                                                                                                  ataacTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCATATTGTGCCACAGGt  >  1:4845967/1‑140 (MQ=255)

ATCAATAGCAACCGGCAGATCGTATGTAATATGCATTATAAAACCTCTTCGCCTGAATTAAATATGTAGGTAACCGTAACCGACACCTGCAAGACAGACAGGTGGATTATTTATGTTTAAATAAAAACAAATAATTAACCAACTTCTATTAATTGCCTTCGTCTACACCCATTATAAGATGAATACTCTTTGGCTAATTCCACCAAAACCGATGCTGCTTTTTTAATACGATAATTTTTCGACCATACCGCGGCATATTGTGCCACAGGT  >  NZ_CP025268/3266678‑3266947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`