| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,678,164 | (T)8→7 | pseudogene (157/367 nt) | mdtJ ← | multidrug/spermidine efflux SMR transporter subunit MdtJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,678,157 | 0 | T | . | 99.2% | 2331.4 / 5.2 | 491 | pseudogene (164/367 nt) | mdtJ | multidrug/spermidine efflux SMR transporter subunit MdtJ |
| Reads supporting (aligned to +/- strand): ref base T (1/3); new base . (264/223); total (265/226) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 516 total aligned reads displayed.
AACACAATCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCA > NZ_CP025268/1678018‑1678292 | tCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATCAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCGACGCCTAAGGCGAttttttta > 2:7497865/1‑139 (MQ=255) tCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttttttta > 2:4159120/1‑139 (MQ=255) tCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttttttta > 1:8367943/1‑139 (MQ=255) tCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttttttta > 1:8765787/1‑139 (MQ=255) ccAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGaaa < 1:6173165/140‑1 (MQ=255) cAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAag > 1:3446476/1‑140 (MQ=255) cAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGGCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAag > 1:2043246/1‑140 (MQ=255) gggTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagag > 1:6065271/1‑140 (MQ=255) ggtggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagaga < 2:5623801/140‑1 (MQ=255) gtggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagagag < 2:6725527/140‑1 (MQ=255) gtggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagagag < 2:1099119/140‑1 (MQ=255) ggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 1:2867309/140‑1 (MQ=255) ggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa > 1:3954021/1‑140 (MQ=255) ggtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaa < 2:1340777/140‑1 (MQ=255) ggtGAACCCCGCATTTATCCACAGCGATAAACGTACGTCGAATCACTAACCGCGAAACAACGTAATAAATACACTACCGAAACCTTCCCACAGCGCATACGCTACGCCTTAGGCGA‑TTATTTTAACGGCGAAAGAGAGaa < 2:9683422/140‑1 (MQ=255) gtTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGaaa > 2:357761/1‑140 (MQ=255) ttAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAat > 1:1268674/1‑140 (MQ=255) ttAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAat > 2:7760932/1‑140 (MQ=255) cccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAGAGAGAGAAatata > 2:1858532/1‑139 (MQ=255) cccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAatatat > 1:3833423/1‑140 (MQ=255) ccGGCAATTTTCATCAGCGATAAACTTTCGTCGCATACCAACACGCTAAACAAGGGAATAAAGAAAATACCGATACCGGCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TATTTTTAACGGCGAAAGATAGAAAtatata < 2:1272726/140‑1 (MQ=255) ccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAtttttttaa > 1:3561243/1‑116 (MQ=255) ccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAAtatata > 1:2168344/1‑140 (MQ=255) ccGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAAtatata < 1:5876040/140‑1 (MQ=255) cGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATAc > 2:2215310/1‑140 (MQ=255) ggCAATTTTCATCAGCGATANACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCNA‑TTTTTTNAACGGCGAAAGAGAGAAATATATACg > 1:6241685/1‑140 (MQ=255) caGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAagagag > 2:4672459/1‑117 (MQ=255) gCGATAAACTTTCGTCGAATAACAACACGCCACACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAatcatc < 1:9772819/140‑1 (MQ=255) cGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAAtcatca > 1:4597830/1‑140 (MQ=255) cGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAAtcatca > 1:7806419/1‑140 (MQ=255) gATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAc < 2:5808683/140‑1 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 2:1688542/140‑1 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc < 2:3545335/140‑1 (MQ=255) cTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCAt < 1:2461680/140‑1 (MQ=255) tcgtcgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTaa > 1:161836/1‑140 (MQ=255) tcgtcgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTaa > 1:509210/1‑140 (MQ=255) tcgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAAt > 2:8088698/1‑140 (MQ=255) tAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAgc > 2:7971358/1‑140 (MQ=255) tAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAgc > 1:5762909/1‑140 (MQ=255) aaaaCGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAgccgcc < 1:815191/140‑1 (MQ=255) acccgcgAAACAAGGTAATACATAAAAGACCGATACCTTCCCACAGCGCATACGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCa < 2:249427/137‑1 (MQ=255) aaCGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCAt < 1:7321743/140‑1 (MQ=255) cTAAACAAGGTAATAAATAATATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTcc < 2:6821863/140‑1 (MQ=255) ggTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGa > 1:6379901/1‑140 (MQ=255) ggTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCAGTAAAATAAAGCCGCCATTTCCCTCACTGa > 1:4237771/1‑140 (MQ=255) aataaataAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGc > 1:9285393/1‑140 (MQ=255) aataaataAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGc < 1:5991479/140‑1 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTc > 2:9131078/1‑140 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTc > 1:3353480/1‑140 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTc > 1:8793753/1‑140 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTc > 2:9275340/1‑140 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 1:447755/140‑1 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 2:2856553/140‑1 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGccc < 2:2263194/140‑1 (MQ=255) aacgaCCGATACCGTCCCCCAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAt < 1:6840635/136‑1 (MQ=255) aaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAt < 1:4143381/140‑1 (MQ=255) aaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAt > 1:5255820/1‑140 (MQ=255) aataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGaaa > 1:9683607/1‑61 (MQ=255) aataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAtt > 2:1541470/1‑140 (MQ=255) aataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAtt > 1:1807957/1‑140 (MQ=255) aataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAtt > 1:4881230/1‑140 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCAcc > 2:8768714/1‑87 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGa > 1:9172262/1‑140 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGa > 2:708808/1‑140 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGa > 2:1989630/1‑140 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGa > 1:3165422/1‑140 (MQ=255) aCCTTCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACa < 2:4405376/140‑1 (MQ=255) tCCCACAGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGt > 2:1017328/1‑140 (MQ=255) acaGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCg > 2:7326058/1‑140 (MQ=255) acaGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCg > 2:5951951/1‑140 (MQ=255) caGCGCATGAGCTACGCCTAAGGCG‑TTTTTTTTAACGGCGAAAGAGTGATATAGATACGTCAGAGAAATCCTCACCAGGATTAAGTTAAAGCCGCCCTTTCCCTGTCTGACGCTCGCCCGTTTCAGTGTCAGCGTTCCgg > 2:2451681/1‑140 (MQ=255) caGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAAtatata > 1:7097804/1‑57 (MQ=255) aGCGCATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGt > 1:7006050/1‑140 (MQ=255) cgcATAAGCTACGCCTCAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAACTCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTCCCGGTac > 2:7191604/1‑139 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 2:8468451/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 1:8055353/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 2:3354565/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 2:3221237/1‑140 (MQ=255) cgcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTaa > 2:6896507/1‑140 (MQ=255) gcATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCTTTGACAGCGTACCGGTAAt < 2:6072690/140‑1 (MQ=255) cATAAGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAAtt > 1:3058286/1‑140 (MQ=255) aGCTACGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTg < 1:8202025/140‑1 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 1:769325/1‑140 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 1:5428449/1‑140 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 2:6330095/1‑140 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 1:1927538/1‑140 (MQ=255) aCGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGc > 2:2995721/1‑140 (MQ=255) cGCCTAATGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATAACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCa < 2:3850043/140‑1 (MQ=255) cGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCa < 2:5340597/140‑1 (MQ=255) cGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCa < 1:9032252/140‑1 (MQ=255) cGCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCAGTTCATTGACAGCGTACCGGTAATTTCTGTAGCa < 2:2614169/140‑1 (MQ=255) gCCTAAGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCaa > 1:6659820/1‑140 (MQ=255) aaGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGc > 2:3951277/1‑140 (MQ=255) aaGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGc < 1:110176/140‑1 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGTGAGAAATATAGACGACAGAGACATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACGGACGCTCGCCCATTTCAGTGACAGCGTCCCGGGGCGGTCTGTAGCACTAGcg > 2:6644706/1‑139 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAgccgcc < 1:267269/76‑1 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAgccgcc > 2:267269/1‑76 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGcc > 1:6532158/1‑140 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGcc > 2:5015482/1‑140 (MQ=255) aGGCGA‑TTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGcc > 2:8313252/1‑140 (MQ=255) | AACACAATCCCGGCGACCAGGGTGGTTAACCCGGCAATTTTCATCAGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTTAACGGCGAAAGAGAGAAATATATACGACAGAGAAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCA > NZ_CP025268/1678018‑1678292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |