| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,690,360 | (C)5→6 | pseudogene (1047/1403 nt) | fumC ← | class II fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,690,355 | 1 | . | C | 98.2% | 2361.8 / 27.1 | 688 | pseudogene (1052/1403 nt) | fumC | class II fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base . (7/5); new base C (306/368); total (313/375) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 737 total aligned reads displayed.
TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCACCAATTC > NZ_CP025268/1690216‑1690493 | ttCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg < 2:4779405/140‑1 (MQ=255) tCGCTCACGATTCGTGTCACTACCCACTGCGCATTGTTTGTTCAACCTGTCCAAGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTTGTCGGAAGAAGTTCAGTTAAAAGTTACCGGAAgcg‑c < 2:9218128/140‑1 (MQ=255) tCGCTCACGATTCGGTTCACTACCCACTGCGCCGTGTTTGTTAAACCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c < 1:6387323/140‑1 (MQ=255) tCGCTCACGATTCGGTTCAATACCCTCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCACAGTTACCGGAAgcg‑c < 2:5087091/140‑1 (MQ=255) tCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c < 2:389002/140‑1 (MQ=255) tCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c < 2:4931385/140‑1 (MQ=255) tCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c < 2:5298315/140‑1 (MQ=255) tCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c < 2:5441355/140‑1 (MQ=255) cGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c < 2:3346564/140‑1 (MQ=255) cTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑cc‑c < 1:6201205/140‑1 (MQ=255) tCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑cc‑c‑c < 1:8006236/140‑1 (MQ=255) gATTCGGTTCAAGACCCACTGCGCAGTGTTTGTTAAAACTTTCCAGGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑cc‑c‑ccagg < 2:8739995/140‑5 (MQ=255) gTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATc > 2:977592/1‑140 (MQ=255) cAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGcc < 1:4026631/140‑1 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCAcg > 1:5152083/1‑140 (MQ=255) tACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCAACATTGGACGGAAGACGGTCAGTTCAAAGTTACCGGAAGCG‑C‑CC‑C‑CATGTTGATCGCCAcgt > 2:2026254/1‑140 (MQ=255) ccACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CCTGTTGATCGCCAcgtcg < 1:3201794/140‑1 (MQ=255) cACTGCGCAGTGTTTGTTAAAACTTTCCCTGCCATCTGCCAGCACGCGCACCGAGTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCAcgtcgt < 2:7504647/140‑1 (MQ=255) cACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCAcgtcgt < 1:6582219/140‑1 (MQ=255) cACTGCGCAGTGATTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCAcgtcgt < 1:6775420/140‑1 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGtt > 2:5645165/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTGCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGtt > 2:6818188/1‑140 (MQ=255) aCTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCAACATTGGACGGAATACGTTCAGTTCAAAGTTACCGGACGCG‑C‑CCAC‑CATGTTGATCGCCACGTCGtt > 2:5930813/1‑140 (MQ=255) tGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTcc > 2:7011058/1‑140 (MQ=255) tGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTcc > 2:9587882/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTccc > 2:1024068/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTccc > 1:7255133/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTccc > 1:953332/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTccc > 2:3224499/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTccc < 2:9106049/140‑1 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTccc > 1:2296169/1‑140 (MQ=255) gcgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTccc > 1:2555654/1‑140 (MQ=255) cgcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCa < 2:8880182/129‑1 (MQ=255) gcAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCa > 2:8167625/1‑140 (MQ=255) tgtttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCAc > 1:6105426/1‑140 (MQ=255) gtttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCCTCAcc > 2:7403355/1‑140 (MQ=255) gtttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCAcc < 2:1547699/140‑1 (MQ=255) tttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCt < 1:1013561/140‑1 (MQ=255) tttgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCt > 2:8544374/1‑140 (MQ=255) tgttAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGa < 1:2214769/140‑1 (MQ=255) ttAAAACTTTCCATGCCATCTGCCA‑CAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 1:6955727/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 1:5547911/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 1:342703/140‑1 (MQ=255) tAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CAGGTTGATCGCCACGTCGTTCCCCATCACCTGAcag < 2:35885/140‑1 (MQ=255) aaCTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag < 1:8257892/140‑1 (MQ=255) cTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCagag > 2:649609/1‑140 (MQ=255) tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGc < 2:3002350/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa > 2:4650103/1‑140 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 1:4558325/140‑1 (MQ=255) ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 1:1340763/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGt < 1:1745188/138‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:2757668/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:3796635/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:48994/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:8711752/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:1606120/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 2:2813390/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:5454954/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:7674540/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:7366924/140‑1 (MQ=255) gCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:9788429/140‑1 (MQ=255) gCCATCCGCCATCAAGCGCACCGCTGGGAGGAAATTGCTGATCACCATTGGACGGAAGACGTACAGTTCTACGTTACCGGAAGCG‑CACC‑C‑CAGCGTGTTAGCCACGTCTTTCACCATCACCTGACAGCAGTGCATTGttt < 2:1413344/140‑2 (MQ=255) cATCTGCCAGCAAGCGCACCGCTGGCAGGAAATTGTGGATCACCATTGGACGGAAGACGGTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGGTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAt < 2:6642806/140‑1 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCACAGGTACCGGAATCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 2:2260117/140‑1 (MQ=255) cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc < 1:9258503/140‑1 (MQ=255) tGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCt < 1:4826879/140‑1 (MQ=255) gCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTc < 1:1514145/140‑1 (MQ=255) cAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcac < 1:8578604/140‑1 (MQ=255) aGCCAGCGCACCGAGTGAAGGAACTTGTGGATCACCATTGGACGGCAGTCGTTCAGTTCAAAGTTACCGGACGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:7756856/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:2401114/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:4304659/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:4737739/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 2:1225606/140‑1 (MQ=255) aGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTcaca < 1:9091215/140‑1 (MQ=255) gCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATGGGACGGAAGACGTTCAGTTCAAAGTTACCGGTAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGGTCCCCAGCACCTGACAGCAGAGCAGGGTTAATGCGTcactc > 2:1736380/1‑138 (MQ=255) aGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACtgt > 2:4115260/1‑140 (MQ=255) cgcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGACGACGTTCAGTTCCAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTCATGCCTCACACTgtgt > 2:5563451/1‑140 (MQ=255) gcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGtt < 1:5077593/140‑1 (MQ=255) cACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTg > 2:7176178/1‑140 (MQ=255) cACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTg > 1:7883893/1‑140 (MQ=255) cACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTg > 1:5721576/1‑140 (MQ=255) gATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGtt > 1:9686382/1‑140 (MQ=255) aTTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTc > 2:7674271/1‑140 (MQ=255) ggAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTc > 1:1187347/1‑140 (MQ=255) ttGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCgg < 1:712445/140‑1 (MQ=255) tgGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCAt > 1:4295719/1‑140 (MQ=255) cACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTg > 2:4170896/1‑140 (MQ=255) ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAg > 1:5015153/1‑140 (MQ=255) ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTAGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAg > 1:8842065/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 2:6171335/1‑140 (MQ=255) aaGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTc > 1:2963351/1‑140 (MQ=255) aGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑CC‑CACATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCAAGATTGAGCTGCCCGGCTCa < 2:3472958/140‑1 (MQ=255) cagttcaAAGTTACCGGAAGCGCC‑CC‑C‑CCTGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCg < 2:7940079/140‑1 (MQ=255) cagttcaAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGCTCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCAGGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCg < 2:5754147/140‑1 (MQ=255) gttcaAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCggg > 1:3043336/1‑140 (MQ=255) gttcaAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCggg > 1:3598223/1‑140 (MQ=255) gttcaAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCggg > 2:8389146/1‑140 (MQ=255) caAAGTTACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGAtt < 1:2023485/140‑1 (MQ=255) gtACCGGAAGCGCC‑CC‑C‑CATGTTGATCGCCCCGTCGTTCCCCATCACCTGACAGCAGAGCAGGGTTAAGGCCTCACACTGTGTTGGGTTCACTGTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGAt < 2:2571640/139‑1 (MQ=255) ggAAGCGCC‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCAc < 1:7502067/140‑1 (MQ=255) | TTCGCTCACGATTCGGTTCAATACCCACTGCGCAGTGTTTGTTAAAACTTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑CC‑C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAGCTGCCCGGCTCATTTTCCGGGATTGAGATTTCACCAATTC > NZ_CP025268/1690216‑1690493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |