| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,826,683 | (A)7→8 | intergenic (‑247/+51) | chbB ← / ← osmE | PTS N,N'‑diacetylchitobiose transporter subunit IIB/osmotically‑inducible lipoprotein OsmE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,826,676 | 1 | . | A | 95.2% | 2497.2 / 93.3 | 669 | intergenic (‑240/+58) | chbB/osmE | PTS N,N'‑diacetylchitobiose transporter subunit IIB/osmotically‑inducible lipoprotein OsmE |
| Reads supporting (aligned to +/- strand): ref base . (26/6); new base A (414/223); total (440/229) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.38e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 672 total aligned reads displayed.
TGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑C‑‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCAT > NZ_CP025268/1826539‑1826810 | tataGACGTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGATGAGAATTGAGAACTCAGGC‑C‑‑ATA‑AA‑ATAACGGGGAAATGGcg > 2:9480769/1‑139 (MQ=255) tataGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGcc > 2:9711996/1‑140 (MQ=255) tataGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGcc > 1:6840531/1‑140 (MQ=255) tataGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGcc > 2:331013/1‑140 (MQ=255) ataGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACAGGCGCAATGGcag > 2:2745484/1‑138 (MQ=255) aGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCggg > 1:8810773/1‑139 (MQ=255) aGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGt > 1:2829267/1‑140 (MQ=255) aGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGt > 1:3764017/1‑140 (MQ=255) gACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGtt < 2:7338737/140‑1 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTTACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgat > 2:8289423/1‑138 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGTACTCAGGC‑C‑‑A‑ATAA‑AATCCGGCGCAATGGCCGGTGTCCgtt > 1:9590850/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGACCTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGGTTCCgtt > 1:16985/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:6121489/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:6393938/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:5056214/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:4542319/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:434510/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:8999612/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:4143559/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:1018448/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 2:4752331/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:3233556/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 2:1816656/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 2:2487586/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:2426453/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:2336764/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 2:4360528/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgat > 2:8578017/1‑138 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAAACGGCGCAATGGCCGGTTTCCgtt > 1:7695749/1‑140 (MQ=255) aGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATAAAGAACTCATGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCgtt > 1:7233911/1‑140 (MQ=255) aGCAATAGTATTTCGTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAAGTCGCGAAGATAATTATGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCACTGGCCGGTTTCCgtt > 2:2863685/1‑140 (MQ=255) tAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTAc > 2:4172688/1‑140 (MQ=255) tAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTAc > 1:8650879/1‑140 (MQ=255) tAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTAc > 2:7490292/1‑140 (MQ=255) tAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACAATTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTACGTTGTTAc > 2:4903336/1‑140 (MQ=255) gTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTc > 1:5731446/1‑140 (MQ=255) cTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCtt > 2:3430145/1‑140 (MQ=255) tttGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCttt < 1:6011646/140‑1 (MQ=255) tGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCa > 2:1183993/1‑140 (MQ=255) tataAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGaa > 2:3987310/1‑140 (MQ=255) ataAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAAt > 1:4623738/1‑140 (MQ=255) aTTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGAt < 1:1382038/140‑1 (MQ=255) ttCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACtt < 1:3154730/140‑1 (MQ=255) tctcCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGCAA‑‑A‑A‑AA‑AAAACGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTc > 2:104654/1‑140 (MQ=255) tctcCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGAC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTc > 1:214967/1‑140 (MQ=255) ctcCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGTCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCg < 2:2088420/140‑1 (MQ=255) ctcCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCg < 1:7892164/140‑1 (MQ=255) ccTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGACCTCAGGC‑C‑‑A‑ATAA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCa < 1:6236788/140‑1 (MQ=255) ccTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCa < 2:5877435/140‑1 (MQ=255) ccTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCa < 1:7278054/140‑1 (MQ=255) ttGTCCTGTGGTTATGACCCTCTTCACATTTCGGGAAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGc < 2:4591158/140‑1 (MQ=255) ttGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGc < 1:2539036/140‑1 (MQ=255) ttGACCTGTGGTAATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGc < 1:5353464/140‑1 (MQ=255) aCCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGACTTGATTACTTCGCAGCCtg < 2:6397286/140‑1 (MQ=255) aCCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCtg < 1:3609068/140‑1 (MQ=255) aCCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCtg < 2:229687/140‑1 (MQ=255) aCCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCtg < 2:5918698/140‑1 (MQ=255) tgGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCTGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGag > 2:8716969/1‑139 (MQ=255) tgGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGAt < 1:817329/140‑1 (MQ=255) tgGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGAt < 2:9625958/140‑1 (MQ=255) tgGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGAt > 2:1462279/1‑140 (MQ=255) gTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCTCAGCCTGTGGATCa < 2:912686/140‑1 (MQ=255) gTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCa < 1:199618/140‑1 (MQ=255) gTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCa < 1:97408/140‑1 (MQ=255) gTTATGACCCTCCTCACATTTCGGGCAAATCATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGCATTGATTACTTCGCAGCCTGTGGATCa < 1:9372445/140‑1 (MQ=255) aTGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGTCGAATTGATTACTTCGCTGCCGGTGGATCAgtg > 2:5306691/1‑140 (MQ=255) aTGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAgtg > 1:65190/1‑140 (MQ=255) aTGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAgtg > 2:3817319/1‑140 (MQ=255) aTGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTACGCAGCCTGTGGATCAgtg > 2:7952702/1‑140 (MQ=255) tGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTCAGACCTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAgtgg > 2:7667513/1‑139 (MQ=255) gACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTc < 1:9226240/140‑1 (MQ=255) ccTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTa > 1:5848805/1‑140 (MQ=255) tctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTAtt > 1:2939686/1‑140 (MQ=255) tctTCACAATTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTAtt < 1:8254332/140‑1 (MQ=255) ctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CAAA‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTAtt > 1:7431098/1‑140 (MQ=255) ctTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTc > 2:6577131/1‑140 (MQ=255) cgtCACATTTCGGGCCAATAATTCGCGACGATCAGACAGACCTCAGGC‑C‑‑A‑ACAA‑AACCCGGCGCCATGGCCGGTTTCCGGGGTTACTCAAGCTTTCAGACTACGTGATTACGTCGCTGCGTGTGGAGCCGTGTCGTATTc > 2:8431239/3‑140 (MQ=255) cacaTTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCGGTGGATCAGTGTCGTATTCAGc > 1:9507224/1‑140 (MQ=255) acaTTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGca < 2:8138613/140‑1 (MQ=255) acaTTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGca < 2:2604103/140‑1 (MQ=255) acaTTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGca < 2:3115750/140‑1 (MQ=255) aTTTCGGGCAAATCATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGcaca > 1:155402/1‑140 (MQ=255) tttCGGGCATTTAATTCGCGAAGAGCATTTTGTACTCAGGC‑C‑‑ACA‑AA‑ATACCGGCGCAATGGCCGGTTTCGGTGGTTTCTCTAGCTTTGTGACGAGTTGTGTACTTCGCAGCCTGTGGATCAGGGTCGGATTCTGCACAg > 2:6203919/1‑140 (MQ=255) tttCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAg > 2:935639/1‑140 (MQ=255) tCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGt < 1:1246410/140‑1 (MQ=255) tCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGt < 2:7181982/140‑1 (MQ=255) cGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTc > 1:4298771/1‑140 (MQ=255) gggCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCt > 1:7988472/1‑140 (MQ=255) gggCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCt > 2:8964395/1‑140 (MQ=255) ggCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTg < 1:3441631/140‑1 (MQ=255) aataatTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATaa > 1:4945450/1‑140 (MQ=255) aatTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCg < 2:3662542/140‑1 (MQ=255) aatTCGCGAAGATAATTAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCg < 1:7058751/140‑1 (MQ=255) aTAATCAAGAACTCACGC‑A‑‑A‑A‑AATAAACCGGCTCAATGGCCTGTTTCCGGTGTTACTCAAGCTTTCATACGAATAGAGTACTTCGCAGCCTGTGGAACAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGAc < 2:4516197/140‑1 (MQ=255) tAAGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTc < 1:4775208/140‑1 (MQ=255) aGAACTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCg < 2:5435627/140‑1 (MQ=255) aaCTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGt > 1:8330327/1‑140 (MQ=255) aCTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTa > 1:3884751/1‑140 (MQ=255) aCTCAGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTa > 2:5735851/1‑140 (MQ=255) aGGC‑CA‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTatcat > 2:675556/1‑140 (MQ=255) | TGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTGACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAATAATTCGCGAAGATAATTAAGAACTCAGGC‑C‑‑A‑A‑AA‑AAACCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAGCTTTCAGACGAATTGATTACTTCGCAGCCTGTGGATCAGTGTCGTATTCAGCACAGGTCTGATAACCGGAGTTGATGACATGTCCGGTATCAT > NZ_CP025268/1826539‑1826810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |