| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,769,852 | +C | intergenic (‑52/‑89) | yfjM ← / → rnlA | DUF1524 domain‑containing protein/type II toxin‑antitoxin system toxin mRNA endoribonuclease RnlA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,769,848 | 1 | . | C | 95.8% | 1404.0 / 50.5 | 428 | intergenic (‑48/‑93) | yfjM/rnlA | DUF1524 domain‑containing protein/type II toxin‑antitoxin system toxin mRNA endoribonuclease RnlA |
| Reads supporting (aligned to +/- strand): ref base . (8/10); new base C (145/261); total (154/274) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 445 total aligned reads displayed.
TTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TG‑CC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCA > NZ_CP025268/2769709‑2769982 | cTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TG‑cc < 1:7851554/140‑1 (MQ=255) cTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TG‑cc < 1:9797645/140‑1 (MQ=255) cTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TG‑cc < 2:5923352/140‑1 (MQ=255) agTCTGCTGGCGAATCATACCTAACTATCGCGGGGCTGCTTGCAGACATCAGTAAGAGGTGACCGAAACGATGGACATCAGCCCCCAATTTGAGGACTGCCCCCCCGGTAGACGATCCGGCACTATAGTTGGAG‑TG‑cc‑c‑c < 2:7222989/139‑1 (MQ=255) tgGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCa < 1:5228558/140‑1 (MQ=255) caGTATCGAGTTGCTGCTTGGAGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCGATAGTTGGAC‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAg < 2:404033/139‑1 (MQ=255) caGTATCGAGTTGCTGCGTGGTGAGATCACGAAGAGGGTACCGACCCGATGGACATCATACCCAAGATTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TAGTCAGGTGGCTAAATTTAg < 2:8087888/139‑1 (MQ=255) aaGGATCGAGTTGCTGCTTGGTGAGCTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAg < 1:1461939/140‑1 (MQ=255) aGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGc > 1:5051084/1‑140 (MQ=255) aGTATCGAGTTGCTGCTTCGTGAGATCAGGAAGAGGTTACCGAAACGAGGGACATCATCCCCCATTTTGTGGACAGCCCACCCGGTCTACGATCCTGCCCTATAGTTGGAG‑AGCCC‑C‑C‑TAGTCCGGTGGCTAGAGTTAGc > 1:8114809/1‑140 (MQ=255) tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCaa > 2:4938563/1‑140 (MQ=255) tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTGTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGGTGGAG‑TGCCC‑C‑C‑TCTTCAGGTGGCTCAAGGTAGCaa > 2:1131822/1‑140 (MQ=255) aTCGAGTTGCTGCTTTGTGAGATCAGGAAGAGGTTACCGAAACGAAGGACATCATCCCCCATGTTGTGGACGGCCCCCCCGGTTGAGGATCCTGCCCTCTAGTGGGAG‑TG‑CC‑C‑CGTCGTCGGGTGGCTCAATTTAGCaca > 2:1002465/1‑138 (MQ=255) tCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAAt < 1:4761951/140‑1 (MQ=255) tCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAAt < 1:759809/140‑1 (MQ=255) tCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAAt < 1:682267/140‑1 (MQ=255) aGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCaa < 1:4274220/140‑1 (MQ=255) aGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCaa < 1:2823515/140‑1 (MQ=255) ttGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATa < 1:193859/140‑1 (MQ=255) ttGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATa < 2:3108505/140‑1 (MQ=255) ttGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATa < 1:2989722/140‑1 (MQ=255) ttGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATa < 1:9486865/140‑1 (MQ=255) ttGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATa < 1:5689574/140‑1 (MQ=255) ttGCTGCTTGGTGAGATCAGGAAGAGGGTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATa < 1:6715360/140‑1 (MQ=255) tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATac < 1:655875/140‑1 (MQ=255) ctgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGTTCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATacac > 2:2194148/1‑140 (MQ=255) ctTGGTGAGATCATGAAGAGGTTTCCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGACCTATAGTTGGAGTTC‑CC‑C‑C‑TATTCAGGTGTCTAAATTTAGCAAATCAATACACTTc < 2:2750668/140‑1 (MQ=255) tGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg < 2:845287/140‑1 (MQ=255) tGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg < 1:881157/140‑1 (MQ=255) gggTGAGATCAGGAAGAGGTTACCGATACGCTGGACATCATCCCCCATTTGGTGGACGGCCCCCCCGGTAGACGATCCGGCCCTCTCGTCGGAG‑TGCCC‑C‑C‑TCCCCAGGTGCCTAAATTTAGCCAATCACCACACTACAg < 2:3351323/139‑1 (MQ=255) ggTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTGTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTAGAGTTGGAG‑TGCCC‑C‑C‑GCTTCCGGTGGCTAAATTTAGCAAATCAATACACTTCAgg > 1:240754/1‑140 (MQ=255) gTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg < 1:8019414/140‑1 (MQ=255) gTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg < 2:6632319/140‑1 (MQ=255) gTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg < 1:7539380/140‑1 (MQ=255) gTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACGGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg < 1:8957357/140‑1 (MQ=255) agaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggggg < 1:6146318/140‑1 (MQ=255) agaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggggg > 2:68823/1‑140 (MQ=255) agaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggggg < 1:1337620/140‑1 (MQ=255) agaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACGGCCCCCCCGGTAGACGATCCTGCCCTAGAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCACTACACTTCAgggggg < 2:7635828/140‑1 (MQ=255) aTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACCCTTCAGGGGGGta < 1:6454698/140‑1 (MQ=255) aTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta < 2:228103/140‑1 (MQ=255) aTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta < 1:8550929/140‑1 (MQ=255) aTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta < 1:2153896/140‑1 (MQ=255) aTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTACCAAATCAATACACTTCCGGGGGGta < 2:2047443/140‑1 (MQ=255) aTCAGGAAGAGGTAACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCACTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGTTGGCTAAATTTATAAAATCAATACACTTCAGGGGGGta < 1:1076153/140‑1 (MQ=255) tCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtat > 2:4207240/1‑140 (MQ=255) aaGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTg < 1:142842/140‑1 (MQ=255) gagGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTa < 1:291706/140‑1 (MQ=255) gagGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTa < 1:1138051/140‑1 (MQ=255) ttACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt < 1:2564472/140‑1 (MQ=255) tACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATCGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta > 2:8829996/1‑127 (MQ=255) tACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGGTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTATATTTAGCAAATCAATACACTTCAGGGGGGTCTTCTTGTagaggt > 1:9560229/1‑138 (MQ=255) aCCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TCTTCAGGTGGCTAAATTTAGCAAATCAATACACGTCAGGGGGGTATTATTGTAGAGttt > 1:8312628/1‑140 (MQ=255) cGAAACGATTGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCATGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGTTATTATTGTAGAGTTTcc < 2:9066822/140‑1 (MQ=255) cGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTTGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTcc < 2:2399992/140‑1 (MQ=255) aaaCGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACTATCCTGCCCTATAGGTGGAG‑TG‑CCAC‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTcccc < 2:1251160/140‑1 (MQ=255) aaaCGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTcccc < 1:3378394/140‑1 (MQ=255) aaCGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCa < 1:9262697/140‑1 (MQ=255) cGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCata < 2:9522318/140‑1 (MQ=255) atcatcCCCCCTTTTGTGGACGGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGTGGGCTACATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTa < 2:2596578/140‑1 (MQ=255) cataCCCCAATTTGTGGACTTCCCACCCGGTAGACGATACTGCCCTATATATGGAG‑TGACC‑A‑C‑TATTCAGGTTGCTAAATTTAGCAAATCAATACACTTCATGGTGGTATTATTGTATAGTTTCCCCATATTTTTCTATg < 2:6109084/140‑1 (MQ=255) tcCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATggg > 2:967536/1‑140 (MQ=255) cccccATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGa < 1:9154528/140‑1 (MQ=255) cccccATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGa < 1:692927/140‑1 (MQ=255) cccATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATc < 1:4430401/140‑1 (MQ=255) gtgGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAAt < 1:3704237/140‑1 (MQ=255) gtgGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAAt > 2:4602710/1‑140 (MQ=255) tGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCACATCAATACACTTCAGGGGGGTCTTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAAt > 2:3740063/1‑140 (MQ=255) gCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGGATTAGTGTAGAGTTTCCCCAGATGTTTCTATGGGATCCAGGAACTGACaagc > 1:484533/1‑138 (MQ=255) cccccccGGTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCa > 1:4169680/1‑140 (MQ=255) gTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCTGGGGGGTATTTTTGTAGAGTTTCCACATGTGTTTCTCTGGGATCCAGGACATGCCATTCAggcggtag > 2:7560764/1‑134 (MQ=255) gTAGACGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTAc > 2:1488634/1‑140 (MQ=255) aGACGCTCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCATGTGGCTAAATTTAGCAAATCAATACACTGCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACaa < 2:9740459/140‑1 (MQ=255) cGATCCTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGACATGACAATCAGGAGTTACaaaaa > 2:8196891/1‑140 (MQ=255) ccTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTa > 2:5402853/1‑140 (MQ=255) ccTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTa > 1:7467057/1‑140 (MQ=255) cTGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTaa > 1:387410/1‑140 (MQ=255) tGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggg > 1:1554267/1‑65 (MQ=255) tGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTaaa > 2:650604/1‑140 (MQ=255) tGCCCTATAGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTaaa > 1:7754493/1‑140 (MQ=255) taGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta < 1:7167829/62‑1 (MQ=255) taGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTCTGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc < 1:7970275/140‑1 (MQ=255) taGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATc < 1:7407279/98‑1 (MQ=255) taGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCATGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc > 2:9426422/1‑140 (MQ=255) taGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc > 2:1700230/1‑140 (MQ=255) taGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc > 1:2725037/1‑140 (MQ=255) taGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc < 2:7467057/140‑1 (MQ=255) taGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc < 1:594411/140‑1 (MQ=255) taGTTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACATCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc > 2:8740726/1‑140 (MQ=255) taGTTGGAG‑TGACC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc < 2:7165598/140‑1 (MQ=255) taGGTGGAG‑TGCCC‑C‑C‑TATTCAGGTGGCTTAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACCATCAGGAGTGACAAAAACTTAAATCTGGTc < 2:4432800/140‑1 (MQ=255) tGGAG‑TG‑CC‑CGC‑TCTTCAGGTGGATAAATTTTGCAAATCATTACTCTTCAGGGTTGTATTTTTGTAGATTTTCCCCATATTTTTCTATGGGATCCAGGATTTGATCTTCAGGATTTACAATAACTTAAATCTGGTCAggg < 2:5671831/140‑1 (MQ=255) ggAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATa > 2:8414747/1‑42 (MQ=255) ggAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATa < 1:8414747/42‑1 (MQ=255) ggAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTATAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGc > 2:2793907/1‑140 (MQ=255) ggAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGc > 1:4529329/1‑140 (MQ=255) ggAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGc > 2:9202080/1‑140 (MQ=255) ggAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATNATTGTAGAGTTTCCCCATATGTGTCTATGTGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGc > 1:6314638/1‑140 (MQ=255) gAG‑TGCCC‑C‑C‑TATTCATGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCa < 2:4699374/140‑1 (MQ=255) gAG‑TGCCC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCa < 1:5402853/140‑1 (MQ=255) | TTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAG‑TG‑CC‑C‑C‑TATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGCA > NZ_CP025268/2769709‑2769982 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |