| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 4,542,898 | (A)6→7 | pseudogene (27/602 nt) | fimB → | type 1 fimbria switch DNA invertase FimB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 4,542,892 | 1 | . | A | 98.4% | 3439.1 / 31.1 | 885 | pseudogene (21/602 nt) | fimB | type 1 fimbria switch DNA invertase FimB |
| Reads supporting (aligned to +/- strand): ref base . (9/5); new base A (543/328); total (552/333) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 964 total aligned reads displayed.
CCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑A‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542754‑4543026 | ccACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a > 2:7590964/1‑140 (MQ=255) cTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a < 1:3381908/137‑1 (MQ=255) ttACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCTGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a‑aaa‑a < 2:4672038/140‑1 (MQ=255) ttACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATGATTGCTAACCCAGCACAGCGAGTGCGCGTCTGTAATTATACGGGACAACCGATGAAGAATAAGGCTGAGAA‑C‑a‑aaa‑a > 2:8088817/1‑140 (MQ=255) aCGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a‑aaa‑aaa > 2:4163746/1‑139 (MQ=255) gttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a‑aaa‑aaagg < 1:1573567/140‑4 (MQ=255) gttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a‑aaa‑aaagg > 1:2206142/1‑137 (MQ=255) gttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a‑aaa‑aaagg > 2:6798491/1‑137 (MQ=255) ttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a‑aaa‑aaagga < 2:1836011/140‑5 (MQ=255) tagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a‑aaa‑aaaggaa < 1:4778343/140‑6 (MQ=255) tagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a‑aaa‑aaaggaa < 2:1268479/140‑6 (MQ=255) tagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑a‑aaa‑aaaggaa < 2:6017089/140‑6 (MQ=255) agttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGAGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAAc > 2:7963027/1‑140 (MQ=255) ttattaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACtt > 1:103530/1‑140 (MQ=255) ttattaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACtt > 2:5424842/1‑140 (MQ=255) tattaAGCAAACGTTCGCTTTTATAAACATAACCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTc > 1:3889524/1‑140 (MQ=255) aaGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGa > 1:8572972/1‑140 (MQ=255) aaGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGa > 1:7191406/1‑140 (MQ=255) aaaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCa < 2:2320919/140‑1 (MQ=255) aaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCAt > 1:2470805/1‑140 (MQ=255) aaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCAt > 2:7049699/1‑140 (MQ=255) aCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATa > 1:4169649/1‑140 (MQ=255) gTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGt < 1:9208343/140‑1 (MQ=255) cGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGaa > 1:2812660/1‑140 (MQ=255) gCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGaaa > 1:5947295/1‑140 (MQ=255) cTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAAt > 1:9547939/1‑140 (MQ=255) tttATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCg > 2:9682933/1‑140 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAAt < 2:3136784/140‑1 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAAt < 1:995513/140‑1 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAAt < 1:800380/140‑1 (MQ=255) aTAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCa < 1:121775/136‑1 (MQ=255) aTAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTcc > 1:3541163/1‑140 (MQ=255) aaTCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGTGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCtt > 2:2603929/1‑140 (MQ=255) aTCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTa < 1:585292/140‑1 (MQ=255) aTCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTa < 2:145360/140‑1 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑ATAAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCATTaaa < 1:2537853/140‑1 (MQ=255) aGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAag < 1:6436388/140‑1 (MQ=255) ggATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagc < 2:4844156/140‑1 (MQ=255) tAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagcagc < 2:3750264/140‑1 (MQ=255) tAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagcagc < 2:5784699/140‑1 (MQ=255) tAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagcagc > 1:5440495/1‑140 (MQ=255) aaaTGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGt < 1:7778870/111‑1 (MQ=255) aaaTGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGt > 2:7778870/1‑111 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 1:2687696/140‑1 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:6216773/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑A‑AAA‑AATGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 2:8464443/1‑140 (MQ=255) tGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCgg < 2:8950420/140‑1 (MQ=255) attattGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGcc < 2:4490314/140‑1 (MQ=255) ttGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCAt > 1:5604504/1‑140 (MQ=255) tAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 2:7294429/140‑1 (MQ=255) tAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 2:6524453/140‑1 (MQ=255) tAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcag < 2:1671305/140‑1 (MQ=255) aaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagc > 1:9362728/1‑140 (MQ=255) aaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagc > 1:5041943/1‑140 (MQ=255) aaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagc > 1:7485342/1‑140 (MQ=255) aaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagc > 1:3705053/1‑140 (MQ=255) aaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagc > 1:1930600/1‑140 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 2:7158191/140‑1 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 1:2104456/140‑1 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 2:9310145/140‑1 (MQ=255) aGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTa > 1:7086200/1‑140 (MQ=255) aGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTa > 1:823056/1‑140 (MQ=255) gCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTaa > 1:6535217/1‑140 (MQ=255) gCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGAAGCACGTaa > 2:3515493/1‑140 (MQ=255) cacaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAat > 1:7338775/1‑140 (MQ=255) acaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAatt > 1:6868685/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:3050681/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:1326382/1‑140 (MQ=255) gcgTCTGTAATTATAAGGGAAAAACGATGTAGAATAAGGCTCATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGAct < 2:7467569/140‑1 (MQ=255) gcgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGAct < 2:8238330/140‑1 (MQ=255) gcgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGAct < 2:3014113/140‑1 (MQ=255) gcgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGAct < 2:4292211/140‑1 (MQ=255) cgTCTGTACTGATATGGGGCAATCGATGATGAATAAGGCTGATAA‑C‑A‑AAACAA‑GGTACTTCCTGACCGGTAGTGAAATCGCATCAGTCCTTAAAGCAGCAAATGCCGGGCCTCATGCGGCCCGGAGTTATTGTCTGCctg > 2:4022655/1‑139 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 2:9115709/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 2:2083366/1‑140 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 2:3883708/140‑1 (MQ=255) aTTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGt < 1:8952666/140‑1 (MQ=255) ataAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGtttt > 2:4940474/1‑140 (MQ=255) ataAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGtttt > 1:9656557/1‑140 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt < 1:8672048/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:6370766/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa > 1:8405588/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa > 1:7595049/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:1111816/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 1:508231/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa > 1:9114216/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa > 1:3209449/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:8615756/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa > 2:2846608/1‑140 (MQ=255) attcGATGAAGAATAAGGCTGATAACC‑A‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCAGGCAGCACGTAATTATTGTCTGACTGTGCTTTGTTTTGTTCATGGt > 2:5145014/4‑140 (MQ=255) tAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa > 1:7869726/1‑123 (MQ=255) tAAGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTg > 1:6095341/1‑140 (MQ=255) aaGGCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGa > 1:4537080/1‑140 (MQ=255) ggCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGaaa < 2:6249562/140‑1 (MQ=255) ggCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGaaa > 1:4307224/1‑140 (MQ=255) gCTGATAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAAt < 2:9467830/140‑1 (MQ=255) aTAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:1793007/1‑140 (MQ=255) aTAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:8804013/1‑140 (MQ=255) aTAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:5652421/1‑140 (MQ=255) aTAA‑CAA‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTCTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:6662530/1‑140 (MQ=255) | CCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑A‑AAA‑AA‑GGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542754‑4543026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |