New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP025268 932964 =444 (0.770)45 (0.120) 13/182 10.0 16.3% intergenic (+317/+27) clpA/CXP41_RS04925 ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser
?NZ_CP025268 = 1104277 169 (0.440)intergenic (+346/+28) CXP41_RS05715/CXP41_RS05720 protein YcdU/RtT sRNA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 308 total aligned reads displayed.

GGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTC  >  NZ_CP025268/1104138‑1104398
                                                                                                                                            |                                                                                                                         
ggATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGt                                                                                                                           <  2:4737501/140‑1 (MQ=34)
     gACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACttt                                                                                                                      <  1:1655102/140‑1 (MQ=34)
     gACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGACCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AACAAAAAGCCCGTACttt                                                                                                                      <  2:7171520/140‑1 (MQ=21)
        tcgcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGt                                                                                                                   <  1:314736/140‑1 (MQ=34)
        tcgcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGt                                                                                                                   <  1:5981000/140‑1 (MQ=34)
          gcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTGTCGtgg                                                                                                                 >  1:4516941/1‑138 (MQ=21)
             tcgctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAg                                                                                                              <  1:8386528/140‑1 (MQ=34)
             tcgctcgcCCTGCGGGCAGCCCGCTCACTGCGGTCACGGTCTGTCCTACTGGCGGTCGCCAGGTGTCGTGCCCCGGTCGGGGTTTCTCATCCCCACGGTGTGTGCAATACACG‑AAAAAAAAGCCAGTACTTTCGTACgtg                                                                                                              <  2:2393709/140‑3 (MQ=11)
               gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGct                                                                                                            <  1:4701750/140‑1 (MQ=34)
               gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGct                                                                                                            <  2:7447935/140‑1 (MQ=34)
               gctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGct                                                                                                            <  1:8030751/140‑1 (MQ=34)
               gctcgcCCGGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTGCTCAGCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGct                                                                                                            <  2:3963553/140‑1 (MQ=255)
                ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGctc                                                                                                           <  1:8554122/140‑1 (MQ=34)
                ctcgcCCTGCGGGCAGCCCGCTCACTGCGTGCACGGTCTGGCCACCTGGCTGTCGCCAGTGGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGctc                                                                                                           <  1:3734502/140‑1 (MQ=255)
                ctcgcCCGGCGGGCAGCCCGATCAGTGCGTTCACGGTCTTCCCACCTGGCGGTCGCCAGTTGTCGACCCCCGGTCTGGGCTTCTCAGCCCCCCGGGGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGctc                                                                                                           <  1:174936/140‑1 (MQ=11)
                    cccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCtcttct                                                                                                       >  1:3601984/1‑140 (MQ=34)
                    cccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCGTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCtcttct                                                                                                       <  2:3165041/140‑1 (MQ=21)
                      cTGCGGGCATCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCttt                                                                                                     <  2:8418415/140‑1 (MQ=21)
                           ggCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAata                                                                                                <  1:260094/140‑1 (MQ=34)
                              aGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGCCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGAGTGTTCAATAATCG‑AAAAATTAGCCCTTACTTTCGTACGAGCTCTTCTTTAAATATgg                                                                                             <  1:9846668/140‑1 (MQ=11)
                               gCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGc                                                                                            >  1:684846/1‑140 (MQ=34)
                               gCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTGTCGTACGAGCTCTTCTTTAAATATGGc                                                                                            >  1:2042016/1‑140 (MQ=21)
                                   gCTCACTGCTTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGGCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTg                                                                                        <  2:2633315/140‑1 (MQ=21)
                                   gCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCAGCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAACTATGGCGGTg                                                                                        <  2:2535167/140‑1 (MQ=21)
                                    cTCACTGCGGTCACGGTATCTCCAACTGGCTGTCGCCAGTTGTCGACCCCCTGTCGGGGCTTCTCATCCACCCGGTGTGTTCAATACACG‑AAAAAAAAGCCCGTACTTTCTTACGAGCTCTTCTTTAAATATGGCGGTGa                                                                                       <  1:5292214/140‑1 (MQ=11)
                                       aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCTGTGAggg                                                                                    <  2:7249532/140‑1 (MQ=21)
                                       aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggg                                                                                    <  1:2463064/140‑1 (MQ=34)
                                        cTGCGTTCACTGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggg                                                                                   <  1:482140/140‑1 (MQ=21)
                                            gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCtcttct                                                                                                       >  1:5461307/1‑116 (MQ=35)
                                              tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATACCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCCTACGTTAGGACGCTCTCTTCTTTAAATATTGCGGTGAGGGGGGGAtt                                                                             >  1:2671937/1‑140 (MQ=11)
                                               cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTg                                                                            >  1:1005290/1‑140 (MQ=34)
                                               cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATAAACG‑AAAAAAAAGCCCGTACTTTCGTACGAg                                                                                                              <  2:5780315/106‑1 (MQ=17)
                                                aCGGTCGGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa                                                                           <  1:3520910/140‑1 (MQ=21)
                                                     cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgc                                                                      >  1:7214304/1‑140 (MQ=34)
                                                        tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATAGACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCg                                                                                           >  2:1794130/1‑116 (MQ=17)
                                                        tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTGCTTTCGGTCGAGCGGGTGGGTAATTCTGGCGGGGAGGGGGGGTTTGGctctctgg                                                                   >  1:6340009/1‑138 (MQ=11)
                                                        tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGct                                                                                                            >  2:6948028/1‑99 (MQ=37)
                                                        tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGct                                                                                                            <  1:7290583/99‑1 (MQ=37)
                                                        tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGct                                                                                                            <  1:6948028/99‑1 (MQ=37)
                                                        tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttc                                                                   >  1:3715952/1‑140 (MQ=34)
                                                           aaCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcgct                                                                <  2:7003983/140‑1 (MQ=34)
                                                            cccggCTGTCGCCACTTGTCGACCCCCGGACGGGGCTTCTCATCCCCCCGGTGTGTGCCATCCACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTACTTTAAATATGTCGGTGCGGGGGGGATTGACTCGCTtcgctc                                                               <  2:4516941/137‑1 (MQ=11)
                                                            aCTGGCTGTCGCCAGGTGTCGACCCCCGGCCGGGGCTTCGCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATACGGCGGTGAGGGGGGGATTGACTCGCTtcgctc                                                               <  1:7892505/140‑1 (MQ=255)
                                                                gCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGccc                                                           >  1:5742098/1‑140 (MQ=34)
                                                                     cGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgc                                                                      >  1:8245932/1‑124 (MQ=35)
                                                                     cGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgc                                                                      <  2:8245932/124‑1 (MQ=35)
                                                                     cGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCgg                                                      <  1:237789/140‑1 (MQ=34)
                                                                       cctgTTGTCGCCCCACGGTCTGGGGTTCTCGTCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGc                                                    <  2:2884574/137‑1 (MQ=11)
                                                                       ccAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATTGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGc                                                    <  1:3381942/140‑1 (MQ=21)
                                                                       ccAGCTCTCGCCCCCCGGTCGGGGCGTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGc                                                    <  1:9470399/140‑1 (MQ=255)
                                                                          gTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGct                                                                                                            >  2:7968079/1‑81 (MQ=38)
                                                                           ttGTCGACCCACCGTCGGGGCTTCTCTTCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGcc                                                <  2:1427108/140‑1 (MQ=255)
                                                                           tggcccccccccGGCCGGGGCTTCTCTGCCCCCCGGTGTGTGCAATAAACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGcc                                                <  2:9309525/133‑1 (MQ=11)
                                                                              tCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg                                                                                             >  2:3722120/1‑92 (MQ=37)
                                                                                gACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTTCGAGCTCTTCTATAAATAAGGCTGGGGGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTc                                           >  2:2185219/1‑140 (MQ=11)
                                                                                gACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTc                                           <  2:4352194/140‑1 (MQ=34)
                                                                                    cccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCTGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg                                       <  2:2042016/140‑1 (MQ=17)
                                                                                     ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGt                                                                                         >  2:8314849/1‑89 (MQ=33)
                                                                                     ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAg                                                  >  2:5591474/1‑128 (MQ=32)
                                                                                     ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGc                                      >  2:8051747/1‑140 (MQ=32)
                                                                                        gTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                                   >  1:4402961/1‑140 (MQ=32)
                                                                                        gTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                                   >  1:3001737/1‑140 (MQ=32)
                                                                                             ggCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGct                                                                                                            <  2:3454305/62‑1 (MQ=35)
                                                                                              gctgctCAGCCCCCCGGTGTGAGCAATACACG‑AAAAAAAAGCCCGTACTGTCGTACGAGCTCTTCTTTAAATCTGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                             <  1:8127654/140‑1 (MQ=11)
                                                                                              gCTTCTCTTCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                             <  2:9016530/140‑1 (MQ=17)
                                                                                                 tctcATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTg                          <  2:8895208/140‑1 (MQ=32)
                                                                                                   ggttCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTc                        <  1:6990774/137‑1 (MQ=17)
                                                                                                       ccccccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc                    <  2:232414/140‑1 (MQ=32)
                                                                                                       ccccccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc                    >  1:9144975/1‑140 (MQ=32)
                                                                                                         ccccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTg                  >  2:3211399/1‑140 (MQ=32)
                                                                                                          cccGGTGTGTGCAATCCACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTgg                 <  1:9578226/140‑1 (MQ=17)
                                                                                                          cccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGa                                                                                       <  1:1524139/70‑1 (MQ=35)
                                                                                                          cccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa                                          >  1:5242964/1‑115 (MQ=32)
                                                                                                          cccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa                                          <  2:5242964/115‑1 (MQ=32)
                                                                                                          cccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTACGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTgg                 >  2:596912/1‑140 (MQ=17)
                                                                                                           ccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAg                                                  <  1:6703403/106‑1 (MQ=32)
                                                                                                           ccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAg                                                  >  2:6703403/1‑106 (MQ=32)
                                                                                                            cGGTGTGTGCAATACACGAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGc                >  1:9151059/1‑140 (MQ=17)
                                                                                                            cGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCt               >  1:8845968/1‑140 (MQ=32)
                                                                                                             ggTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGa                                                                               >  2:3558487/1‑75 (MQ=34)
                                                                                                             ggTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAttcga                                                                          <  2:607086/80‑4 (MQ=1)
                                                                                                                 tgtgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAg                                                                                                              <  1:905645/40‑1 (MQ=40)
                                                                                                                 tgtgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg                                       >  1:3859691/1‑111 (MQ=32)
                                                                                                                 tgtgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                             >  1:4304201/1‑121 (MQ=32)
                                                                                                                 tgtgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCt               >  2:1601834/1‑135 (MQ=32)
                                                                                                                  gtgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg                               >  1:5925906/1‑118 (MQ=32)
                                                                                                                  gtgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg                               <  2:5925906/118‑1 (MQ=32)
                                                                                                                   tgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCgg                                                      <  2:1050635/94‑1 (MQ=33)
                                                                                                                   tgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAg                                                  <  2:7559443/98‑1 (MQ=33)
                                                                                                                   tgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg                                       <  2:7695332/109‑1 (MQ=32)
                                                                                                                   tgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCa        >  2:949679/1‑140 (MQ=32)
                                                                                                                       aTACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTg    >  2:4114982/1‑140 (MQ=32)
                                                                                                                        tACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATgg                                                                                             >  1:5968585/1‑50 (MQ=38)
                                                                                                                        tACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCGTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGt   >  2:6516379/1‑140 (MQ=17)
                                                                                                                         acacG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGt                                                                                         <  1:8090192/53‑1 (MQ=33)
                                                                                                                         acacG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGa                                                                                       <  2:3407598/55‑1 (MQ=33)
                                                                                                                         acacG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                             >  1:7458139/1‑113 (MQ=31)
                                                                                                                         acacG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTc  >  1:8607285/1‑140 (MQ=31)
                                                                                                                         acacG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTc  >  2:4929648/1‑140 (MQ=31)
                                                                                                                         acacG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTc  <  1:3211399/140‑1 (MQ=31)
                                                                                                                                            |                                                                                                                         
GGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTC  >  NZ_CP025268/1104138‑1104398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.