New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP025268 = 4096272416 (0.720)20 (0.050) 17/192 9.0 5.6% intergenic (‑78/+373) rhaD/rhaA rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase
?NZ_CP025268 4096641 = 388 (0.970)intergenic (‑447/+4) rhaD/rhaA rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 533 total aligned reads displayed.

ATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGC  >  NZ_CP025268/4096503‑4096780
                                                                                                                                          |                                                                                                                                           
aTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATCAGGCGCTCGCGCCGCATCCGGCAgt                                                                                                                                            >  1:7218043/1‑140 (MQ=255)
aTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt                                                                                                                                            >  2:8947909/1‑140 (MQ=255)
aTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt                                                                                                                                            >  2:6439719/1‑140 (MQ=255)
aTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt                                                                                                                                            >  2:3601095/1‑140 (MQ=255)
aTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt                                                                                                                                            >  2:2255290/1‑140 (MQ=255)
aTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgt                                                                                                                                            >  1:5870222/1‑140 (MQ=255)
 ttGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgtg                                                                                                                                           >  1:1109455/1‑140 (MQ=255)
 ttGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgtg                                                                                                                                           >  2:6190959/1‑140 (MQ=255)
 ttGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgtg                                                                                                                                           >  1:5389811/1‑140 (MQ=255)
 ttGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGACCGGATAAGGCGCTCGCGCCGCATCCGGCAgtg                                                                                                                                           >  1:9348060/1‑140 (MQ=255)
  tGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgtgt                                                                                                                                          >  1:8658980/1‑140 (MQ=255)
   gCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAgtgtg                                                                                                                                         >  2:3462433/1‑139 (MQ=255)
    ccGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGttt                                                                                                                                        >  1:8060968/1‑140 (MQ=255)
     cGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTa                                                                                                                                       >  2:8737973/1‑140 (MQ=255)
       aCCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTAcc                                                                                                                                     <  1:897693/140‑1 (MQ=255)
            tAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCgcgg                                                                                                                                >  2:3776812/1‑140 (MQ=255)
            tAGGCCGGATAAGGCACTTGTGCCGCAGCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTGATCAGGCCTACAACGGGTGGCGACCCGTTGGCCGGATAAGGCGCGCGCGCCGCATCCGGCAGTGTTTAGCCgcgg                                                                                                                                >  2:7298960/1‑140 (MQ=17)
              ggCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCgcggcg                                                                                                                              >  2:4547120/1‑140 (MQ=255)
               gCCTGAGAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTAATAAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGa                                                                                                                             <  1:6109821/140‑1 (MQ=255)
                         gCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAttt                                                                                                                   >  1:9708881/1‑140 (MQ=255)
                          cACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGGTTACCCGCGGCGACTCACAAgttc                                                                                                                  >  1:8223821/1‑140 (MQ=255)
                             ttGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTANAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCCGTGTTTACCCGCGGCGCCTCAAAAtttcttt                                                                                                               >  1:6305172/1‑140 (MQ=255)
                             ttGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtttcttt                                                                                                               >  1:3544427/1‑140 (MQ=255)
                             ttGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtttcttt                                                                                                               >  1:3164957/1‑140 (MQ=255)
                             ttGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtttctgt                                                                                                               >  1:9830239/1‑138 (MQ=255)
                              tgtgCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtttctgtc                                                                                                              >  2:714474/1‑140 (MQ=255)
                                       tCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACCACTGTTGCCGCCCCGTCGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCACAATTTCTTTCTCATAAGcc                                                                                                     >  2:6834183/1‑140 (MQ=255)
                                       tCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGcc                                                                                                     >  1:2473299/1‑140 (MQ=255)
                                       tCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGcc                                                                                                     >  1:3985194/1‑140 (MQ=255)
                                           gCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCa                                                                                                 <  1:3837959/140‑1 (MQ=255)
                                            caatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCAc                                                                                                <  1:5731092/140‑1 (MQ=255)
                                             aatcaatGCCTGCTGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTGGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACg                                                                                               <  2:2525384/140‑1 (MQ=255)
                                             aatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACg                                                                                               <  2:2097891/140‑1 (MQ=255)
                                             aatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGGTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACg                                                                                               <  1:7536812/140‑1 (MQ=255)
                                               tcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGct                                                                                             <  1:6609038/140‑1 (MQ=255)
                                               tcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGct                                                                                             >  1:8828261/1‑140 (MQ=255)
                                                    gCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCa                                                                                        >  1:4918622/1‑140 (MQ=255)
                                                    gCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCa                                                                                        >  1:6528020/1‑140 (MQ=255)
                                                         aTGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCT‑CAGCCaat                                                                                  >  1:207974/1‑138 (MQ=255)
                                                              tcGCTGTCGCGTCTTATCAGGTGTTGTAGTTTTGACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCt                                                                              <  1:7697160/139‑1 (MQ=37)
                                                              tcGCTGTCGCGTCTTATCAGGCCTACAACGTTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCt                                                                              <  2:1621299/139‑1 (MQ=255)
                                                               cGCTGTCGCGTCTTATCAGGCCTTCAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTa                                                                             >  2:1777548/1‑140 (MQ=255)
                                                                   gTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACctg                                                                         >  1:4604970/1‑140 (MQ=255)
                                                                        gTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGc                                                                    <  1:4442665/140‑1 (MQ=255)
                                                                           ttATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTa                                                                 <  2:8365574/140‑1 (MQ=255)
                                                                           ttATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTa                                                                 <  2:2837458/140‑1 (MQ=255)
                                                                            tATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTAt                                                                >  2:8448567/1‑140 (MQ=255)
                                                                             aTCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATc                                                               <  1:7381600/140‑1 (MQ=255)
                                                                             aTCAGGCCTACAACTGGTGCCGACCCGTAGGCCGTATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATc                                                               <  1:8437520/140‑1 (MQ=255)
                                                                              tCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCTTCCGGCAGTGTTTTCCCGCGGCGACTCAAACTTTCTTTCTCATAAGCCCGCTCGCTCTCCAGCCAGTCGCTAGCTGCTGGCggagcg                                                              >  2:4030778/1‑135 (MQ=37)
                                                                              tCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCg                                                              >  1:2966317/1‑140 (MQ=255)
                                                                                aGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCAGTCGCTACCTGCTGGCGTATCGTg                                                            >  1:3652676/1‑140 (MQ=255)
                                                                                  gCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCGCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCACACTGTCTTTCTCATAAGCCCGCCGGCTCTCCAGCCCTGCGCTCCCTGCTGGCGGAGCGTgtc                                                          >  2:9581261/1‑138 (MQ=37)
                                                                                    cTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGt                                                        <  1:3309711/140‑1 (MQ=255)
                                                                                     tACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGtt                                                       >  1:7080252/1‑140 (MQ=255)
                                                                                      aCAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTg                                                      >  1:4302172/1‑140 (MQ=255)
                                                                                       cAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCCGCCATTCGCTACCTGCTGGCGTATCGTGACGTTgg                                                     >  2:126368/1‑140 (MQ=255)
                                                                                         aCTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCa                                                   <  1:8737973/140‑1 (MQ=255)
                                                                                            gTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAAtttctt                                                                                                                <  2:7568148/76‑1 (MQ=255)
                                                                                            gTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCTTAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGGATCGTGACGTTGGCAAtt                                                >  2:6565747/1‑139 (MQ=255)
                                                                                            gTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATa                                                >  2:5614814/1‑140 (MQ=255)
                                                                                            gTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATa                                                >  2:9297927/1‑140 (MQ=255)
                                                                                             ttGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATAc                                               <  1:9442757/140‑1 (MQ=255)
                                                                                             ttGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATAc                                               >  1:1861844/1‑140 (MQ=255)
                                                                                             ttGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATAc                                               >  1:9644606/1‑140 (MQ=255)
                                                                                             ttGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATAc                                               <  2:1375127/140‑1 (MQ=255)
                                                                                              tGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACa                                              <  2:5804386/140‑1 (MQ=38)
                                                                                              tGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCACTACa                                              >  1:1611684/1‑140 (MQ=255)
                                                                                              tGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACa                                              >  1:1012986/1‑140 (MQ=255)
                                                                                               gCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACAt                                             >  1:1288886/1‑140 (MQ=255)
                                                                                               cacGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTCTTTACCAGCGGCGACTCAAAATATAGTTCTCATTAGCCCGCACGCTCTCGAGCAATTCGCTACCTGCTGGCGTATCGTGACGTTGGCCATACAt                                             >  2:1146718/3‑140 (MQ=37)
                                                                                                       gtatgacGGATATGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGa                                     <  2:7447856/134‑1 (MQ=255)
                                                                                                       gTAGGCCGGATAATGCGCTCGCGACGCATCAGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGa                                     >  2:3840202/1‑140 (MQ=255)
                                                                                                        tAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGAc                                    >  2:482554/1‑140 (MQ=255)
                                                                                                               gATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGc                             >  1:8015516/1‑140 (MQ=255)
                                                                                                               gATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGc                             >  1:8252263/1‑140 (MQ=255)
                                                                                                               gATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGc                             >  2:8255979/1‑140 (MQ=255)
                                                                                                               gATAAGGCGCTCGCGCCGCATCCGGCAGAGTTTACACGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGACTGc                             >  2:3279765/1‑140 (MQ=255)
                                                                                                               gATAAGGCGCGCGCGCCGCATCCGGCAGTGGTTACCCGCGGCGACTCAAAATTTCTTTCTCATAATCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTAGCGTGACGTTGGCACTACATATCCCAGACCGCCTGc                             >  2:7381122/1‑140 (MQ=255)
                                                                                                                    ggCGCGCGCGCCGTATCCGGCAGTGTGTACCCGCGGCGACTCAAAATTTCGTTCTCAGAAGCCCGCACGCTCGCCAGCCAGTCGCGCCCTGCGGGCGGAGCGGGGCGTTGGCCAGAGATTTCCCCGCCCGCCTGCCGCgg                        >  2:8012023/1‑140 (MQ=255)
                                                                                                                    ggCGCGAGCGCCTTATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCACTACATTTCCCAGACCGCCTGCCACgg                        >  1:8543877/1‑140 (MQ=255)
                                                                                                                    ggCGCGAGCGCCTTATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACgg                        >  1:6782544/1‑140 (MQ=255)
                                                                                                                      cgcTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCa                      >  1:9197626/1‑140 (MQ=255)
                                                                                                                       gcTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCaa                     <  2:5100413/140‑1 (MQ=255)
                                                                                                                       gcTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCaa                     >  1:6915820/1‑140 (MQ=255)
                                                                                                                         tCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTCTCGTGACGGTGGCACTACATTTCCCAGACCGCCTGCCACGGCAACg                   >  2:5743598/1‑140 (MQ=255)
                                                                                                                         tCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACg                   >  1:418631/1‑140 (MQ=255)
                                                                                                                         tCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACg                   >  1:7198987/1‑140 (MQ=255)
                                                                                                                         tCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACg                   >  2:9456157/1‑140 (MQ=255)
                                                                                                                          cgcgCCGCATCCGGCCGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATACGCTACCTGCTGGCGTCTCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGa                  >  2:6024447/1‑140 (MQ=255)
                                                                                                                          cgcgCCGCATCCGGCAGTGTTTACCCGCGGCGACTCCAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCACCGa                  >  2:6337099/1‑140 (MQ=255)
                                                                                                                          cgcgCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGa                  >  1:2692945/1‑140 (MQ=255)
                                                                                                                          cgcgCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTAACTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGa                  >  1:1956815/1‑140 (MQ=255)
                                                                                                                            cgccgcATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGAtt                <  1:225823/140‑1 (MQ=255)
                                                                                                                               cgcATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCt             <  2:7970257/140‑1 (MQ=255)
                                                                                                                                gcATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATCCATTTCCCAGACCGCCTGCCACGGCAACGATTTCTg            >  2:8137617/1‑140 (MQ=255)
                                                                                                                                 cATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGc           <  2:4337551/140‑1 (MQ=255)
                                                                                                                                         aGTGTTTACCCGCGGCGACTCAAAATTACTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCcag   <  1:2372645/140‑1 (MQ=255)
                                                                                                                                          gtgtTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCcagc  <  1:5162422/140‑1 (MQ=255)
                                                                                                                                          gtgtTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCcagc  <  2:4468043/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                           
ATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGC  >  NZ_CP025268/4096503‑4096780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.