Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252682,175,4640AT49.4% 45.4 / inf 439intergenic (+27/+3)CXP41_RS11550/CXP41_RS11555IS3‑like element IS3 family transposase/DeoR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base A (147/71);  new base T (140/73);  total (293/146)
Fisher's exact test for biased strand distribution p-value = 7.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 447 total aligned reads displayed.

CGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAAGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTATTTTCGCCGCAC  >  NZ_CP025268/2175330‑2175603
                                                                                                                                      |                                                                                                                                           
   gCAACGGTGTTTAATTATATCGAATGTGATTACTATCGGTGTCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCTGAACAATTTGTAATCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTTGGTAGGTTCAGTCAt                                                                                                                                     <  1:3476009/140‑1 (MQ=11)
    cAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATc                                                                                                                                    <  2:7708532/140‑1 (MQ=21)
     aaCGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATcc                                                                                                                                   >  1:5826040/1‑140 (MQ=25)
              tAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGa                                                                                                                          <  2:6484082/140‑1 (MQ=255)
               aaTTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGAt                                                                                                                         >  2:5406340/1‑140 (MQ=255)
               aaTTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt                                                                                                                         <  2:7400950/140‑1 (MQ=255)
                aTTATATCGAATGTGATTCCAATCGGGGGCGGCGGCACAGTGGGTGTGGCGGCCTCAGTCCGGAACACTTTGAAAACACGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTATGTTCAGTCATCCCTTCGTGGATc                                                                                                                        <  2:5902510/140‑1 (MQ=14)
                 ttATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa                                                                                                                       >  2:9767721/1‑140 (MQ=255)
                    tttCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGGGGCGGCGTCAGTCCGGAACGAGTTGAAATCACTAACCTCGGTTAGGCCTGTGTCCATCTGTCGTGGGTAGGTTCTGTCATCCCGTCGTGGATCAttt                                                                                                                    >  2:1976744/3‑140 (MQ=14)
                    tatCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt                                                                                                                    >  1:6659589/1‑140 (MQ=255)
                    tatCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt                                                                                                                    >  2:4315518/1‑140 (MQ=255)
                    tatCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt                                                                                                                    >  1:4980462/1‑140 (MQ=255)
                      tCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTgg                                                                                                                           <  1:997541/131‑1 (MQ=255)
                      tCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg                                                                                                                  >  2:2510692/1‑140 (MQ=255)
                      tCGAATGTGAGTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg                                                                                                                  >  2:4613181/1‑140 (MQ=255)
                         actgagATTACAATCGCTGGCCCCGGCACAGATGGTGGGGCGGCATCAGTGCGCAACAATTAGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGGGGGTATGGTCAGTCATCCCTTCGTGGATCAATTTGACt                                                                                                               <  2:8669918/135‑1 (MQ=17)
                         aaTGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACt                                                                                                               <  2:4809130/140‑1 (MQ=255)
                         aaTGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACt                                                                                                               >  2:1384090/1‑140 (MQ=255)
                          aTGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTg                                                                                                              >  1:8298827/1‑140 (MQ=255)
                           tgtgATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgc                                                                                                             >  1:382769/1‑140 (MQ=255)
                           tgtgATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgc                                                                                                             >  2:8114991/1‑140 (MQ=255)
                              gATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTgccgc                                                                                                          <  1:6216157/140‑1 (MQ=255)
                               aTTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccgcc                                                                                                         >  1:233093/1‑140 (MQ=255)
                                   cAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGACCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAGCATTTTGACTGCCGCCTgcg                                                                                                     >  1:7565083/1‑140 (MQ=255)
                                   cAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACTAGAACCTCGCTTAGGCCTGTGGCCATATTACGTGGGTAGGATCAGTCATCCCTGCGTGGATCATTTTGACTGCCGCCTgcg                                                                                                     >  2:8951453/1‑140 (MQ=255)
                                   cAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTACAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcg                                                                                                     <  2:1856451/140‑1 (MQ=255)
                                      tCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTa                                                                                                  >  2:5529332/1‑140 (MQ=255)
                                      tCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTa                                                                                                  <  1:2799949/140‑1 (MQ=255)
                                         gTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGACCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGGGGGTAGGATCAGTCATCCCTTCGTGGATCATTGTGACTGCCGCCTgcgcgagtg                                                                                               >  2:9502279/1‑135 (MQ=18)
                                         gTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTc                                                                                               >  1:7403012/1‑140 (MQ=255)
                                         gTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTc                                                                                               >  1:805233/1‑140 (MQ=255)
                                         gTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCGATTc                                                                                               >  1:648427/1‑140 (MQ=255)
                                         gTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATGTGAAACCAAGAACCTCGCTTAGGCCGGTGTCCATATTACGTGGGTCGGGGCCGTCATCGCTTCGTGGATCTGTGTGTGTGGCGCCTgcgggttgg                                                                                               >  2:8598122/1‑134 (MQ=14)
                                          tGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCGATTCt                                                                                              >  2:6861430/1‑140 (MQ=255)
                                          tGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCt                                                                                              >  1:1648510/1‑140 (MQ=255)
                                             cggcggcACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGCTCATTTTGACTGCCGCCTGCGCTATTCTGtt                                                                                           >  2:8183477/1‑140 (MQ=255)
                                              ggcggcACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGttt                                                                                          >  2:1526344/1‑140 (MQ=255)
                                                  gcACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTg                                                                                      <  2:1150226/140‑1 (MQ=255)
                                                           gtgtGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTgg                                                                             <  2:4882687/140‑1 (MQ=255)
                                                            tgtgGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTACGTGGATCATTTTGACTGCCGCCTGCGCTATTATGTTTTTTGGCGCGCTGGc                                                                            >  2:7989274/1‑140 (MQ=255)
                                                            tgtgGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGc                                                                            >  2:8244532/1‑140 (MQ=255)
                                                                gcggcCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGGTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGc                                                                        >  2:6731194/1‑140 (MQ=255)
                                                                gcggcCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGc                                                                        >  2:5989234/1‑140 (MQ=255)
                                                                gcggcCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGc                                                                        <  1:3977639/140‑1 (MQ=255)
                                                                  ggcCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTGTTCTGTTTTTTGgcgcgctggcgcgctg                                                                      >  1:5990597/1‑140 (MQ=255)
                                                                  ggcCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTg                                                                      >  2:3707815/1‑140 (MQ=255)
                                                                      tCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAAt                                                                  >  2:3247824/1‑140 (MQ=255)
                                                                      tCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAAt                                                                  >  1:5474742/1‑140 (MQ=255)
                                                                        aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCg                                                                <  1:9518152/140‑1 (MQ=255)
                                                                        aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAGCATTTTGACTGCCGCCTGCGCTAGTCTGTTTTTTGGCGCGCTGGCGAGCTGTAATCg                                                                >  2:7496964/1‑140 (MQ=255)
                                                                          tCCGGAACAATTAGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTAGTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGct                                                              >  2:3838720/1‑140 (MQ=255)
                                                                                    tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAAccc                                                    >  1:9710041/1‑140 (MQ=255)
                                                                                    tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAAccc                                                    >  1:8733472/1‑140 (MQ=255)
                                                                                    tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAAccc                                                    >  2:419217/1‑140 (MQ=255)
                                                                                    tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAAccc                                                    >  2:303146/1‑140 (MQ=255)
                                                                                    tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGACGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAATccc                                                    >  2:8816924/1‑140 (MQ=255)
                                                                                       gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGAc                                                 <  1:855363/140‑1 (MQ=255)
                                                                                        aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACt                                                <  1:1351228/140‑1 (MQ=255)
                                                                                           aCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTcc                                             <  1:3144875/140‑1 (MQ=255)
                                                                                               gAACCTCGCTTAGGCCTGTGTCCATATTACGTGAGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTggg                                         >  2:4436927/1‑140 (MQ=255)
                                                                                                  ccTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGtct                                      <  1:7340990/140‑1 (MQ=255)
                                                                                                  ccTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGtct                                      >  2:2158777/1‑140 (MQ=255)
                                                                                                     cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCgg                                   >  1:9643644/1‑140 (MQ=255)
                                                                                                     cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCgg                                   >  1:6976106/1‑140 (MQ=255)
                                                                                                      gCTTAGGCCTGTGTCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGt                                  <  2:341687/140‑1 (MQ=255)
                                                                                                      gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGt                                  <  1:1768220/140‑1 (MQ=255)
                                                                                                      gCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGt                                  >  2:6286233/1‑140 (MQ=255)
                                                                                                       cTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTACGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGtt                                 >  1:892517/1‑140 (MQ=255)
                                                                                                        ttAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCGGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGttt                                <  1:1077366/140‑1 (MQ=255)
                                                                                                          aggCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCa                              <  2:9276574/138‑1 (MQ=255)
                                                                                                          aggCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCa                              >  1:4738894/3‑140 (MQ=255)
                                                                                                           ggCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCAc                             <  1:897579/139‑1 (MQ=255)
                                                                                                                gtgtCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTa                        >  2:5143415/1‑140 (MQ=255)
                                                                                                                gtgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTa                        >  1:288184/1‑140 (MQ=255)
                                                                                                                 tgtCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTAc                       >  1:4604932/1‑140 (MQ=255)
                                                                                                                 tgtCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTAc                       >  1:7211106/1‑140 (MQ=255)
                                                                                                                 tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTAc                       >  1:772315/1‑140 (MQ=255)
                                                                                                                 tgtCCATATTACGGGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTAGTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTAc                       >  2:6371444/1‑140 (MQ=255)
                                                                                                                  gtCCATATTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTAcc                      <  1:3653246/140‑1 (MQ=255)
                                                                                                                  gtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTAcc                      <  2:7212655/140‑1 (MQ=255)
                                                                                                                   tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCa                     <  1:3280765/140‑1 (MQ=255)
                                                                                                                    ccATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAg                    <  2:1648771/140‑1 (MQ=255)
                                                                                                                      atatTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGAc                  >  2:2348158/1‑140 (MQ=255)
                                                                                                                      atatTACGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGAc                  >  1:934920/1‑140 (MQ=255)
                                                                                                                           ccGTGGGTAGGTGCAGTCATCCCTTCGTGGATCAGGTTGACTGCCGCCTGCGCTCGTCGGTGGTTGGGCGCGCTGGCGAGCTGAAATCGGTCGGTCAACGGGACTGCCGGGGTCTCGGGTTCTCGAGGACCTGACattat             >  2:358724/2‑140 (MQ=255)
                                                                                                                           aCGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAATCACGACTTCCTGGGTCTCGGTTTCACTATTACCAGACattat             >  2:9132864/1‑140 (MQ=255)
                                                                                                                           aCGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACattat             >  1:4436705/1‑140 (MQ=255)
                                                                                                                           aCGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACattat             >  1:556996/1‑140 (MQ=255)
                                                                                                                           aCGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACattat             >  1:2019638/1‑140 (MQ=255)
                                                                                                                           aCGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACattat             >  2:6565575/1‑140 (MQ=255)
                                                                                                                           aCGTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACattat             >  1:1422662/1‑140 (MQ=255)
                                                                                                                             gTGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTAttt           >  2:5337708/1‑140 (MQ=255)
                                                                                                                             gTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAATCCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTAttt           >  1:5246265/1‑140 (MQ=255)
                                                                                                                              tGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTAtttt          <  1:2522405/140‑1 (MQ=255)
                                                                                                                              tGGGTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTAtttt          >  1:4095437/1‑140 (MQ=255)
                                                                                                                               gggTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTATTTTc         >  2:5476921/1‑140 (MQ=255)
                                                                                                                                ggTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTATTTTcg        >  1:518087/1‑140 (MQ=255)
                                                                                                                                 gTAGGTTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTATTTTcgc       >  1:4261539/1‑140 (MQ=255)
                                                                                                                                     gATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTATTTTCGCCGCa   >  2:2578869/1‑140 (MQ=255)
                                                                                                                                      aTCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTATTTTCGCCGCAc  <  2:6969722/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                           
CGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAAGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCTGAAATCGCTCTTTAAACCCGACTTCCTGGGTCTCGGTTTCACTATTACCAGACATTATTTTCGCCGCAC  >  NZ_CP025268/2175330‑2175603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑