BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,292,982	0	A	G	58.8%	60.1 / inf	302	noncoding (55/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (46/73); new base G (92/78); total (147/155)
Fisher's exact test for biased strand distribution p-value = 1.19e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 309 total aligned reads displayed.

CGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCG  >  NZ_CP025268/1292845‑1293121

cGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGATAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGTTGGAGTTATAAACAGAGCGCGCTGCCGACTTCGGGTCGTTTCCTGAGGCACCGCTCTCTCGCTGACg                                                                                                                                           >  2:9635904/1‑140 (MQ=9)

 gcttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGAGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCACTCTCGCTGACGc                                                                                                                                          >  2:5421202/4‑140 (MQ=14)

  cttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                                                                                                                         <  2:7611360/138‑1 (MQ=255)

   ttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTc                                                                                                                                        >  2:7733327/2‑140 (MQ=255)

     gggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGGGGCAACGCTCTCTCGCTGTCGCTCGa                                                                                                                                      >  1:7974460/1‑140 (MQ=11)

      ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACACAGAGCTGCGAGCATCTCCCATCTGGTCGATTCATGAGGCTAAGCACTCTCGCTGACGcaacag                                                                                                                                     >  2:2773622/1‑135 (MQ=14)

      ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCTACGCTCTCTCGCTGGCGCTCgcg                                                                                                                                     >  2:5623611/1‑138 (MQ=11)

      ggCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAg                                                                                                                                     >  2:1212337/1‑140 (MQ=255)

       gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTTCCTGCGGCAACGCACTATCGCTGGCGCACGAgt                                                                                                                                    >  1:3759651/1‑139 (MQ=11)

       gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgt                                                                                                                                    >  2:1951433/1‑139 (MQ=255)

       gCAGAATATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAgt                                                                                                                                    <  1:1755510/140‑2 (MQ=255)

         aGAATATTTGATTGCGGATTCGTTTGAGTATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                                  <  1:9200374/140‑1 (MQ=255)

         aGAATATTTGATTGCGGATTAGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                                  <  2:4341935/140‑1 (MQ=255)

          gAATATTTGATTGCTGAATCTTTTGATAATACCGGGGCTATAGAAACTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGAGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGGTCGAGCCGa                                                                                                                                 >  1:342603/1‑140 (MQ=14)

          gAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGa                                                                                                                                 <  1:7787435/140‑1 (MQ=255)

           aaTATTTGATTGCGGATTCGCTTGAGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCAGCGGCAACGCTCTCACGCTGGCGCTCGAGTCGaa                                                                                                                                >  1:3304927/1‑140 (MQ=11)

             tatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCACTCTCGCTGACGCTCGAGCCGaaac                                                                                                                              >  1:4147224/1‑138 (MQ=255)

             gatTTGATTGCGGATTCGTTTGAGATTTCCGGGGATTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                              <  2:8828370/139‑1 (MQ=255)

                ttGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCATa                                                                                                                           >  1:9771425/1‑140 (MQ=255)

                ttGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTa                                                                                                                           >  2:5226261/1‑140 (MQ=255)

                  gagtGCGGATTCGATTGAGAGTTCCGGGTCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCttggt                                                                                                                         <  2:6951710/137‑4 (MQ=11)

                     ttcgtaTTCGTTAGAGTATTTCGTTGCTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                      <  2:2724650/135‑1 (MQ=11)

                     tGCGGATTCGTTTGAGCATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                      <  2:8663259/140‑1 (MQ=255)

                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                      <  2:8625600/140‑1 (MQ=255)

                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                      >  2:8174403/1‑140 (MQ=255)

                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCACGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                      >  1:6805517/1‑140 (MQ=255)

                     tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCGCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                                      >  2:7875812/1‑140 (MQ=255)

                      gCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                                     <  1:8326918/140‑1 (MQ=255)

                       cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGTGGCAACGTTCTCTCGCTTTCGCTCGAATCGAACCTTAGTCGAAg                                                                                                                    >  2:2104450/1‑140 (MQ=14)

                         gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCt                                                                                                                  <  1:146852/140‑1 (MQ=255)

                         gATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCGTAGTCGAAGCt                                                                                                                  >  1:9483961/1‑140 (MQ=255)

                               tttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCAt                                                                                                            <  1:3279635/139‑1 (MQ=255)

                                ttGAGACTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATc                                                                                                           <  1:2261088/140‑1 (MQ=255)

                                         tctggtcTTTTGTAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                  <  2:2568774/134‑1 (MQ=255)

                                         ccgtgtcTTTTGCAAGAGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                                  <  2:5030827/134‑1 (MQ=11)

                                              tcTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                             <  2:8396392/139‑1 (MQ=12)

                                              gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                             <  1:2393540/140‑1 (MQ=18)

                                                  ttGTAAGTGTTGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                         <  1:8981614/140‑1 (MQ=12)

                                                  ttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGa                                                                                         <  2:1849180/140‑1 (MQ=17)

                                                         tGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCACCCTGACGCACCAGCCGGACCATAGTCGAAGCATCAACACCATACCCCCAAGGGCAGAATAattt                                                                                  >  1:2733183/1‑139 (MQ=11)

                                                                 gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGACGAACCTTAGTCGAAGCTTATCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGa                                                                          >  2:3282588/1‑140 (MQ=255)

                                                                  tggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAt                                                                         <  2:7924515/140‑1 (MQ=255)

                                                                         aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGACTATTTAATTGCGGATTCGTTgg                                                                  >  2:9376741/1‑140 (MQ=11)

                                                                         aGGATTACTCAGCGCTGCGCGCATCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGGAGAATATTGAATTGCGGATTCGTTgg                                                                  >  2:5952012/1‑140 (MQ=11)

                                                                          ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                                 >  2:9274064/1‑140 (MQ=11)

                                                                           tttttcTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                <  1:6947948/135‑1 (MQ=11)

                                                                           gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                <  1:8157887/140‑1 (MQ=255)

                                                                           gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGa                                                                <  1:7320404/140‑1 (MQ=255)

                                                                           gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCt                                                                                                                             <  2:7526215/79‑1 (MQ=34)

                                                                           gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCt                                                                                                                             >  1:7526215/1‑79 (MQ=34)

                                                                           gATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCt                                                                                                                             <  2:1579455/79‑1 (MQ=34)

                                                                                    gcgcggcgcgCGTCGCCCTTCGGGTCGTAGCCTGCGGCAACGCACTCTCGCGGGCGCTCGAGACGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAGGGGCAGAATATTTACTTGCGGATTCGTTGGGAAGTTCAggg                                                       <  2:6267625/140‑1 (MQ=14)

                                                                                    gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                       <  2:7147511/140‑1 (MQ=255)

                                                                                     cgcTGCGCGCTTCGCCCTTCTGGTCGTTGCCTGCGGCAACGCTCTATCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCATTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGGTCAGGGa                                                      >  2:3184367/1‑140 (MQ=14)

                                                                                     cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTATCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTGGTTGGGAAGTTCAGGGa                                                      >  2:2019597/1‑140 (MQ=14)

                                                                                     cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTTCGGATTAGTTGGGGAGGTGAgggg                                                      >  2:1035403/1‑139 (MQ=11)

                                                                                     cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCATCCCCGCATGGGCAGAAAATTTAATTGCGGAGTCGTTGGGAAGTTCAgggg                                                      >  1:7049246/1‑139 (MQ=14)

                                                                                     cgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCTCTCGCGGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAAGTGCGGATTCGTTGGGAAGTTCAGGGa                                                      >  2:4628996/1‑140 (MQ=14)

                                                                                        tGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtt                                                   >  2:5844167/1‑140 (MQ=255)

                                                                                        tGCGCGCTTCGCCCTTCGGGTCGTTGCCGGCGGCAACGCTCACTCGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCATATAATACTTCCCCGCCGGGGCCGGATATTTAATTGCGGATTCGTTGGGTAGTTCAGGGACtt                                                   >  1:2935756/1‑140 (MQ=11)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGATTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                 >  2:3779973/1‑140 (MQ=14)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTGTCAACCTTCCCCGCATGGGCAGAATATTTAAATTCGGATTCGTTGGGAAGATCAGGGAAtttt                                                 >  1:8661977/1‑140 (MQ=14)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                       <  1:8823086/134‑1 (MQ=255)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                 >  2:1256096/1‑140 (MQ=255)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                 >  2:3990820/1‑140 (MQ=255)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                                 >  2:8923328/1‑140 (MQ=255)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCGCATCCTTCCCCGCATGGGCAGAAAATTTAATTTCGGATTCGGTGGGGAGGTCATGGACgttt                                                 >  1:2026761/1‑140 (MQ=11)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCCAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTTATTGCGGATTCGTTGGGAAGTTCAGGGAc                                                     <  1:7655625/136‑1 (MQ=11)

                                                                                          cgcgcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCGGCCGCTCGAGCCGAACCTTAGTAGCATCTTCTCATCCGTCCCCGCATGGGCCGAATATTTAATTGCGGTTTCGTTGGGGAGGTGAGGGACtttt                                                 >  1:9361461/1‑140 (MQ=11)

                                                                                             gcTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaa                                              <  1:5490087/140‑1 (MQ=255)

                                                                                              cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGGAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                             <  2:2965294/140‑1 (MQ=14)

                                                                                              cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                             <  2:9018532/140‑1 (MQ=255)

                                                                                              cTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGaaa                                             <  1:1037859/140‑1 (MQ=255)

                                                                                               ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGTAGCTTCTCATCCGTCCCCGCATGGGCCGTATATTTAATTGCGGATTAGGGGGGTAGTTCAGGGGCtttttttag                                            >  1:4942650/1‑135 (MQ=11)

                                                                                               ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTTATTGCGGAGTCGTTGGGAAGTTGAGGGACTTTTGAAAg                                            >  2:5989808/1‑140 (MQ=11)

                                                                                                  gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGGTGGCGCTCGAGTCGAACCTTTGTCGTAGATTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                         <  1:9635904‑M1/140‑1 (MQ=255)

                                                                                                  gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                         <  1:1212337‑M1/140‑1 (MQ=255)

                                                                                                  gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                         <  2:6593653‑M1/140‑1 (MQ=255)

                                                                                                  gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                         <  1:7733327‑M1/140‑1 (MQ=255)

                                                                                                  gCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                         <  1:1483456‑M1/140‑1 (MQ=255)

                                                                                                   cccTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAT                                        <  1:5228261‑M1/140‑1 (MQ=255)

                                                                                                     cTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGG                                      <  1:6494402‑M1/140‑1 (MQ=255)

                                                                                                       tCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGTCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTAAGGGACTTTTGAAAGTGATGGTG                                    <  2:1408860‑M1/140‑1 (MQ=255)

                                                                                                        cGGGTCGTTGCCTGCGGCATCGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGG                                   <  2:2843554‑M1/140‑1 (MQ=255)

                                                                                                        cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGG                                   <  2:7344815‑M1/140‑1 (MQ=255)

                                                                                                        cGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTACCCGCATGGGCAGACTATTTAATTGCGGATTCGTTGGGAAGTTGAGGGACTTTTGAAAGTGATGGTGG                                   >  2:7442691‑M1/1‑140 (MQ=255)

                                                                                                                tGCCTGCGGCAACGCTCTCTCGCTTGCGCACGAGTCGAACCTTGGTCGAAGCTTATAAAACTTCCCCGCATTGGCAGAAAATTTAATTTCGGAATCGTTTGGAAATAAATGGAAGTTTGAAATTGATGGTGGTgggggca                           >  2:9514878/1‑138 (MQ=2)

                                                                                                                tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAA                           <  1:1591522‑M1/140‑1 (MQ=255)

                                                                                                                tGCCAGCGGCAACCCTCTCTCGCTGGCGCACGAGTCGAACCGTGGTCGAAGCTTCTCAAACATACCCGCATGGGCAGAATATTTAAATGCGGATTCGTTGGGAAGGTACGGGACTTTTTAAAGTGATGGTGGGGGGGGac                           >  1:5132057/1‑139 (MQ=9)

                                                                                                                    ggcGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGTAGCTTCTCATACTTCCCCGCATGGGCAGAATATTTAATTGCGGTTTCGTTGGGTAGTTGAGGGACTTTTGAAAGTGATGGTGGTGGGGGTAGGAT                       >  1:8025513‑M1/2‑140 (MQ=255)

                                                                                                                            cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGGTGGTGGTGGGGGAAGGATTcgaacct               >  1:3248089‑M1/1‑133 (MQ=255)

                                                                                                                            cGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTG                                    <  2:3519351‑M1/119‑1 (MQ=255)

                                                                                                                               tctctcGCTGGCTCTCGAGCCGAACCATGGTAGTAGCTACTCAGCCGTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg            <  2:6805148‑M1/140‑11 (MQ=255)

                                                                                                                                 tctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGTTGNTGGTGGGGGAAGGATTcgaaccttcgaa          >  1:6286591‑M1/1‑128 (MQ=255)

                                                                                                                                 tctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTGGGGAAGTTCAGGGACTTTTGAAAGTGTTGGTGGTGGGGGAAGGATTcgaaccttagaa          >  1:4412579‑M1/1‑128 (MQ=255)

                                                                                                                                 tctcGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCCGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACGTTTGAAAGTGATGGGGGGGGGGGAAGGATTcgaaccttcgaa          >  1:1257693‑M1/1‑128 (MQ=255)

                                                                                                                                   tcGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGtt                                                                    <  1:603560/80‑1 (MQ=11)

                                                                                                                                   tcGCTGGCGCTCTAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGtt                                                                    >  2:603560/1‑80 (MQ=11)

                                                                                                                                   tcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCGTCCCCGCAGGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCTGGGACTTTTGAAAGTGATGGTGGTGGGGGACGGATTcgaaccttcgatgt        >  1:8405427‑M1/1‑126 (MQ=255)

                                                                                                                                         aCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTCATTGCGGATTCGTTGGGATGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaagtcgatga  >  2:7815153‑M1/1‑120 (MQ=255)

CGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCG  >  NZ_CP025268/1292845‑1293121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`