BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,028,065	T→C	intergenic (‑41/‑178)	sulA ← / → sxy	cell division inhibitor SulA/CRP‑S regulon transcriptional coactivator Sxy

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,028,065	0	T	C	100.0%	1158.3 / NA	331	intergenic (‑41/‑178)	sulA/sxy	cell division inhibitor SulA/CRP‑S regulon transcriptional coactivator Sxy
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (148/183); total (148/183)

Only 100 of 364 total aligned reads displayed.

AAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGATCCGTTAA  >  NZ_CP025268/1027929‑1028201

 aGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACAt                                                                                                                                      <  1:5979049/140‑1 (MQ=255)

  gCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATc                                                                                                                                     <  2:1818571/140‑1 (MQ=255)

      ggCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGt                                                                                                                                 <  2:2281011/140‑1 (MQ=255)

      ggCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGt                                                                                                                                 <  1:6369486/140‑1 (MQ=255)

      ggCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGt                                                                                                                                 <  2:4518423/140‑1 (MQ=255)

      ggCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGt                                                                                                                                 <  2:5960945/140‑1 (MQ=255)

        cTGTAGTGTATTCCGTAGAGACACGCGCAATTGTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGa                                                                                                                               <  2:8389823/140‑1 (MQ=255)

           tAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGacaa                                                                                                                            >  1:8965174/1‑140 (MQ=255)

                  ttCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGAt                                                                                                                     >  2:9397757/1‑140 (MQ=255)

                          agaCACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTATATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTa                                                                                                             >  2:2612752/1‑140 (MQ=255)

                          agaCACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTa                                                                                                             <  2:5111897/140‑1 (MQ=255)

                               cgcgCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTc                                                                                                        >  2:719827/1‑140 (MQ=255)

                                      ttttACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAaga                                                                                                 >  1:6175269/1‑140 (MQ=255)

                                                tgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCaaa                                                                                       >  2:636850/1‑140 (MQ=255)

                                                  cGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAAtt                                                                                     <  2:5238552/140‑1 (MQ=255)

                                                       gagaACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTc                                                                                <  1:8510/140‑1 (MQ=255)

                                                        agaACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCg                                                                               <  1:5861504/140‑1 (MQ=255)

                                                           acgacgAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTg                                                                            <  1:9610849/140‑1 (MQ=255)

                                                              acgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTg                                                                         >  2:8623112/1‑140 (MQ=255)

                                                               cgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTAtttt                                                                                                         <  1:2975858/107‑1 (MQ=255)

                                                               cgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTAtttt                                                                                                         >  2:2975858/1‑107 (MQ=255)

                                                               cgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGa                                                                        >  1:4218796/1‑140 (MQ=255)

                                                               cgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGa                                                                        <  1:4361008/140‑1 (MQ=255)

                                                               cgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGa                                                                        >  1:9691407/1‑140 (MQ=255)

                                                                  agaaCGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACgg                                                                     >  1:731431/1‑140 (MQ=255)

                                                                    aaCGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGa                                                                   <  2:3381950/140‑1 (MQ=255)

                                                                    aaCGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTAATTTCGGAAAGAGCCACGCAAATTTTGTCGTTGGTGACGGGa                                                                   <  2:876720/140‑1 (MQ=255)

                                                                       gATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGaaaa                                                                <  1:6969777/140‑1 (MQ=255)

                                                                        aTGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAAc                                                               <  1:2786885/140‑1 (MQ=255)

                                                                        aTGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAAc                                                               <  2:793289/140‑1 (MQ=255)

                                                                         tgtgCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACa                                                              >  2:4338380/1‑140 (MQ=255)

                                                                         tgtgCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACa                                                              <  1:3069728/140‑1 (MQ=255)

                                                                         tgtgCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACa                                                              <  1:1019348/140‑1 (MQ=255)

                                                                         tgtgCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTAAGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACa                                                              >  2:8225240/1‑140 (MQ=255)

                                                                         tgtgCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTAACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACa                                                              <  2:7382191/140‑1 (MQ=255)

                                                                             cATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATaaa                                                          <  2:9681137/140‑1 (MQ=255)

                                                                              aTAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAAt                                                         >  1:2166353/1‑140 (MQ=255)

                                                                              aTAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAAt                                                         >  2:3908895/1‑140 (MQ=255)

                                                                               tAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAAtt                                                        >  2:376459/1‑140 (MQ=255)

                                                                                aGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTa                                                       >  1:758971/1‑140 (MQ=255)

                                                                                  ccTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAAt                                                     >  2:5762531/1‑140 (MQ=255)

                                                                                   cTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATaaa                                                          >  1:1265630/1‑134 (MQ=255)

                                                                                   cTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATaaa                                                          <  2:1265630/134‑1 (MQ=255)

                                                                                      aaGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTg                                                 >  1:1120327/1‑140 (MQ=255)

                                                                                      aaGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTg                                                 <  1:1549054/140‑1 (MQ=255)

                                                                                       aGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGc                                                >  1:6490917/1‑140 (MQ=255)

                                                                                       aGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGc                                                >  1:908467/1‑140 (MQ=255)

                                                                                       aGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGc                                                >  1:3876281/1‑140 (MQ=255)

                                                                                        gtgtACATAATCAATCCAGCACCTGTGAGTTTCTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCTAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGcc                                               <  1:7155848/140‑1 (MQ=255)

                                                                                         tgtACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGccc                                              <  2:6509287/140‑1 (MQ=255)

                                                                                          gtACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGcccc                                             <  2:203874/140‑1 (MQ=255)

                                                                                            aCATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCtt                                           >  2:4134837/1‑140 (MQ=255)

                                                                                            aCATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCtt                                           >  2:9348668/1‑140 (MQ=255)

                                                                                            aCATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCtt                                           <  1:8623112/140‑1 (MQ=255)

                                                                                            aCATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCtt                                           >  2:2122667/1‑140 (MQ=255)

                                                                                            aCATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCtt                                           >  2:2835599/1‑140 (MQ=255)

                                                                                             cATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTa                                          >  2:9140808/1‑140 (MQ=255)

                                                                                                aatcaatcCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGa                                       >  1:2585535/1‑140 (MQ=255)

                                                                                                aatcaatcCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGa                                       >  1:5351452/1‑140 (MQ=255)

                                                                                                  tcaatcCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAAt                                     >  1:3797536/1‑140 (MQ=255)

                                                                                                     atcCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGcccc                                             <  1:9438371/129‑1 (MQ=255)

                                                                                                     atcCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAg                                  >  1:8315142/1‑140 (MQ=255)

                                                                                                     atcCAGCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAg                                  >  1:9318386/1‑140 (MQ=255)

                                                                                                          gCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGcc                             <  1:1800939/140‑1 (MQ=255)

                                                                                                          gCCCCTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGcc                             <  1:5238280/140‑1 (MQ=255)

                                                                                                           ccccTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTg                                                 <  1:3326765/119‑1 (MQ=255)

                                                                                                           ccccTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCt                            >  1:4911453/1‑140 (MQ=255)

                                                                                                           ccccTGTGAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCt                            >  1:6706240/1‑140 (MQ=255)

                                                                                                                gtgAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTAtttt                       <  1:2848474/140‑1 (MQ=255)

                                                                                                                 tgAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTc                      <  2:5344116/140‑1 (MQ=255)

                                                                                                                  gAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCg                     <  1:5443645/140‑1 (MQ=255)

                                                                                                                  gAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCg                     <  2:1548697/140‑1 (MQ=255)

                                                                                                                  gAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCg                     <  1:508645/140‑1 (MQ=255)

                                                                                                                  gAGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCg                     <  2:6096458/140‑1 (MQ=255)

                                                                                                                   aGTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGt                    >  2:6859126/1‑140 (MQ=255)

                                                                                                                    gTTACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTa                   <  2:7647244/140‑1 (MQ=255)

                                                                                                                     ttACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACa                                                              >  2:116526/1‑96 (MQ=255)

                                                                                                                     ttACTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAg                  >  1:7404310/1‑140 (MQ=255)

                                                                                                                        cTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTg                                                                                  <  2:7105369/73‑1 (MQ=255)

                                                                                                                        cTGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTa               >  1:4755007/1‑140 (MQ=255)

                                                                                                                         tGTATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTaa              <  2:6655614/140‑1 (MQ=255)

                                                                                                                           tATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGcccc                                             >  2:2379704/1‑107 (MQ=255)

                                                                                                                           tATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACg            >  1:3410532/1‑140 (MQ=255)

                                                                                                                           tATGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACg            >  2:4706453/1‑140 (MQ=255)

                                                                                                                            aTGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACgg           <  2:6490917/140‑1 (MQ=255)

                                                                                                                            aTGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACgg           <  1:9141160/140‑1 (MQ=255)

                                                                                                                            aTGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACgg           <  2:9182928/140‑1 (MQ=255)

                                                                                                                            aTGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACgg           <  1:2291230/140‑1 (MQ=255)

                                                                                                                            aTGGATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACgg           <  2:7486801/140‑1 (MQ=255)

                                                                                                                              ggATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGAt         <  2:3306315/140‑1 (MQ=255)

                                                                                                                              ggATGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGAt         <  1:7895040/140‑1 (MQ=255)

                                                                                                                                 tGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGATCCg      <  1:2002992/140‑1 (MQ=255)

                                                                                                                                 tGTACAGCACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCATATTTTCGTAGTTAACGGATCCg      <  2:7133916/140‑1 (MQ=255)

                                                                                                                                  gtacagcacaTCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGATCCGt     <  2:4654879/140‑1 (MQ=255)

                                                                                                                                   tacagcacaTCCAGTGACAACAAAGATCAACCCTa                                                                                                             <  1:5583631/35‑1 (MQ=255)

                                                                                                                                   tacagcacaTCCAGTGACAACAAAGATCAACCCTa                                                                                                             >  2:5583631/1‑35 (MQ=255)

                                                                                                                                   tacagcacaTCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGATCCGtt    >  1:5752927/1‑140 (MQ=255)

                                                                                                                                    acagcacaTCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGATCCGTTa   <  1:8801901/140‑1 (MQ=255)

                                                                                                                                     cagcacaTCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAAAATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTATCGTAGTTAACTGATCCGTTaa  >  1:4672129/1‑140 (MQ=255)

                                                                                                                                     cagcacaTCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAAATTTTTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTAGTTTCGTAGTTAACGGATCCGTTag  >  2:9116001/1‑139 (MQ=255)

AAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGATCCGTTAA  >  NZ_CP025268/1027929‑1028201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`