Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 1,549,203 T→C pseudogene (1331/1331 nt) CXP41_RS08190 ← leucine‑rich repeat domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,549,2030TC100.0% 811.7 / NA 234pseudogene (1331/1331 nt)CXP41_RS08190leucine‑rich repeat domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (97/137);  total (97/137)

Only 100 of 234 total aligned reads displayed.

AACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCATTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACTTT  >  NZ_CP025268/1549080‑1549334
                                                                                                                           |                                                                                                                                   
            cTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACg                                                                                                         <  1:7463612/140‑1 (MQ=255)
              ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       <  1:5125303/140‑1 (MQ=255)
              ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       <  2:9259319/140‑1 (MQ=255)
              ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       <  2:2335605/140‑1 (MQ=255)
              ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       <  2:1834562/140‑1 (MQ=255)
               tGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       >  2:2005082/1‑139 (MQ=255)
               tGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                                      <  1:681301/140‑1 (MQ=255)
                       tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       <  2:8464891/131‑1 (MQ=255)
                       tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                              <  2:8331474/140‑1 (MQ=255)
                       tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                              <  1:7005430/140‑1 (MQ=255)
                       tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                              <  1:8478968/140‑1 (MQ=255)
                       tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                              <  2:5710284/140‑1 (MQ=255)
                           aTGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                                          >  1:9105421/1‑140 (MQ=255)
                           aTGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                                          <  2:6392681/140‑1 (MQ=255)
                           aTGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                                          <  1:4483328/140‑1 (MQ=255)
                              tttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTa                                                                                       >  2:5690133/1‑140 (MQ=255)
                              tttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTa                                                                                       >  1:6211903/1‑140 (MQ=255)
                              tttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTa                                                                                       >  2:9520513/1‑140 (MQ=255)
                               ttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTAt                                                                                      <  1:7835856/140‑1 (MQ=255)
                               ttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTAt                                                                                      <  2:2896081/140‑1 (MQ=255)
                                tCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATc                                                                                     >  2:473553/1‑140 (MQ=255)
                                  aaCCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCgg                                                                                   >  1:4473845/1‑140 (MQ=255)
                                     ccTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTc                                                                                <  1:9349680/140‑1 (MQ=255)
                                     ccTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCAATGAACAGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTc                                                                                <  1:1699278/140‑1 (MQ=255)
                                       ttCAGATCGTGAATCTAAAGGTTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                              <  2:8180494/140‑1 (MQ=255)
                                       ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACGGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                                              <  1:3882806/140‑1 (MQ=255)
                                                    tCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTg                                                                 >  2:5019576/1‑140 (MQ=255)
                                                              tACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       >  2:1560348/1‑92 (MQ=255)
                                                              tACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaataa                                                       >  1:304083/1‑140 (MQ=255)
                                                               aCATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                              >  2:6590765/1‑100 (MQ=255)
                                                               aCATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                      <  1:473553/140‑1 (MQ=255)
                                                                           tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGaaa                                                                                                            <  2:3345762/74‑1 (MQ=255)
                                                                           tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGaaa                                                                                                            >  1:3345762/1‑74 (MQ=255)
                                                                           tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                        >  1:8936618/1‑126 (MQ=255)
                                                                           tattatCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                          <  1:9520513/140‑1 (MQ=255)
                                                                               atCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                                                <  1:5694296/130‑1 (MQ=255)
                                                                                tCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaagta                                     <  2:7148257/140‑1 (MQ=255)
                                                                                  aacaaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTaaaa                                                                                                                                >  2:5830735/1‑47 (MQ=255)
                                                                                   acaaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTAt                                                                                      >  1:7549601/1‑88 (MQ=255)
                                                                                   acaaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttatt                                               >  2:3124986/1‑127 (MQ=255)
                                                                                   acaaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttatt                                               <  1:3124986/127‑1 (MQ=255)
                                                                                     aaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtt                                                  >  1:5282974/1‑122 (MQ=255)
                                                                                     aaGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGtt                                >  2:720435/1‑140 (MQ=255)
                                                                                       gACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                                                <  2:7469998/122‑1 (MQ=255)
                                                                                        aCCAGCCACTTATAGAATTAGTGATGAGTTATTCACGAAATAGGCCATGAACGGGAGGTACACGATCTGTCCATCAGGTATATCGGTTCCTCTGTTATTGCCTGTTTGTAGTAATCGTTATTTCAGTAAGTATTGTTTAt                             <  2:8900285/140‑1 (MQ=255)
                                                                                        aCCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAt                             <  1:7302465/140‑1 (MQ=255)
                                                                                        aCCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAt                             <  1:1195533/140‑1 (MQ=255)
                                                                                          cAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGc                                                                    <  1:8084369/99‑1 (MQ=255)
                                                                                            gACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                          >  1:6880255/1‑123 (MQ=255)
                                                                                            gACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                          <  2:6880255/123‑1 (MQ=255)
                                                                                             acacTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                                      <  2:6278588/62‑1 (MQ=255)
                                                                                             acacTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                                      >  1:6278588/1‑62 (MQ=255)
                                                                                             acacTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCAt                        <  1:8343969/140‑1 (MQ=255)
                                                                                               acTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCt                      <  1:4232223/140‑1 (MQ=255)
                                                                                               acTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTAGTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCt                      <  2:4464231/140‑1 (MQ=255)
                                                                                                 ttATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                          >  1:9217707/1‑118 (MQ=255)
                                                                                                 ttATAGAATTAGTGATGACTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                              >  1:3574156/1‑66 (MQ=255)
                                                                                                 ttATAGAATTAGTGATGACTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                              <  2:3574156/66‑1 (MQ=255)
                                                                                                  tataGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCTGa                                                                                              >  2:7359061/1‑65 (MQ=255)
                                                                                                   ataGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAgg                  >  1:4997126/1‑140 (MQ=255)
                                                                                                         ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       <  1:8837893/49‑1 (MQ=255)
                                                                                                         ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       <  2:5460027/49‑1 (MQ=255)
                                                                                                         ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       >  2:8837893/1‑49 (MQ=255)
                                                                                                         ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       >  1:5460027/1‑49 (MQ=255)
                                                                                                         ttAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                        <  2:5951832/96‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTgga                                                                                                                 >  2:6138852/1‑37 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTgga                                                                                                                 <  1:6138852/37‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       >  1:9717790/1‑47 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                                              >  1:2653230/1‑56 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTa                                                                        >  1:4648548/1‑78 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGc                                                                    >  2:6228624/1‑82 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGa                                                                >  1:2488579/1‑86 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGa                                                                <  2:2488579/86‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGAt                                                               >  1:1889327/1‑87 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                        <  1:4823129/94‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                        <  1:3431607/94‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                        >  2:3431607/1‑94 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                                        >  2:4823129/1‑94 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                      <  2:1611075/96‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                      >  2:6768751/1‑96 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                                      <  1:6768751/96‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                 <  2:6668481/101‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                 >  1:6668379/1‑101 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGt                                                   <  1:7852917/99‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGt                                                   >  2:7852917/1‑99 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                          >  1:1362710/1‑108 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                          >  1:5889079/1‑108 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                                          <  2:1362710/108‑1 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGttt          >  2:7307902/1‑140 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGttt          >  1:1457691/1‑140 (MQ=255)
                                                                                                           aGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGttt          >  2:430148/1‑140 (MQ=255)
                                                                                                              gatgatTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGtta                                                 >  1:7321482/1‑98 (MQ=255)
                                                                                                                 gatTTTTTCACTAAAAAGGCCCTGAACTGGAGGAATACGATCTGTCCAGAAGGTCTATCGGTTCCTCTGTTATTGCCTGATTGTCATAATCGTTATTACAGTAAGTATTGTTTCTTTCATCTATGGTCATGTTTTTAAcg    >  2:801466/1‑139 (MQ=255)
                                                                                                                   tttATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACttt  <  2:304083/140‑1 (MQ=255)
                                                                                                                      aTTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                                                <  2:9080339/91‑1 (MQ=255)
                                                                                                                       ttCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       >  1:5388548/1‑35 (MQ=255)
                                                                                                                       ttCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                                       >  2:1739655/1‑35 (MQ=255)
                                                                                                                       ttCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGt                                                                                  <  2:7669336/56‑1 (MQ=255)
                                                                                                                       ttCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGt                                                                                  >  1:7669336/1‑56 (MQ=255)
                                                                                                                       ttCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGt                                                   >  2:5290690/1‑87 (MQ=255)
                                                                                                                           |                                                                                                                                   
AACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCATTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATCTAAGGTCATGTTTTTAACTTT  >  NZ_CP025268/1549080‑1549334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: