Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 1,643,849 T→C *166* (TAA→TAG rzpQ ← DUF2514 domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252681,643,8490TC99.3% 511.1 / NA 149*166* (TAA→TAGrzpQDUF2514 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (112/35);  minor base A (1/0);  total (114/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 149 total aligned reads displayed.

TTTATTAATAAAACGTGTCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCTTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTC  >  NZ_CP025268/1643713‑1643985
                                                                                                                                        |                                                                                                                                        
tttattAATAAAACGTGTCAGTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACAGTCCGCGATGTAAATGTTCCGATTTAATATTACCCTAc                                                                                                                                       >  2:1065783/1‑140 (MQ=255)
     taataaAACGTGTCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTg                                                                                                                                  >  1:4153714/1‑140 (MQ=255)
     taataaAACGTGTCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTg                                                                                                                                  >  1:1645766/1‑140 (MQ=255)
      aataaAACGTGTCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGa                                                                                                                                 <  2:7412447/140‑1 (MQ=255)
      aataaAACGTGTCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGa                                                                                                                                 <  2:1645766/140‑1 (MQ=255)
        taaAACGTGTCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATg                                                                                                                               >  1:4175906/1‑140 (MQ=255)
          aaaCGTGTCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCt                                                                                                                             >  1:2264551/1‑140 (MQ=255)
               tgtCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTa                                                                                                                        >  1:1913151/1‑140 (MQ=255)
               tgtCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCAGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTa                                                                                                                        >  2:3805309/1‑140 (MQ=255)
                gtCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTAt                                                                                                                       <  1:9373002/140‑1 (MQ=255)
                     tCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGANTCCTTTTTATTTAAATTTTACATTCCGCGATGCAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCtt                                                                                                                  >  1:6304419/1‑140 (MQ=255)
                       tGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTaa                                                                                                                >  1:6838978/1‑140 (MQ=255)
                         aTTCAGACCTTTTATCTTACCCTTAAGATTTCAGGACTTTTGGCTCATGGAAGAGGCCTTTTTATTTAAATTTTACATTCCGCGATGTAAGTGTTCGGATATAATATTAACCTACATTTGATGGTTTTTCTCTCTTAAAg                                                                                                              >  2:5854147/1‑140 (MQ=255)
                         aTTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTTTCTCTTaatg                                                                                                              >  1:6772490/1‑138 (MQ=255)
                         aTTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAg                                                                                                              >  1:6581815/1‑140 (MQ=255)
                         aTTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAg                                                                                                              >  1:1222899/1‑140 (MQ=255)
                         aTTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAg                                                                                                              >  1:4647591/1‑140 (MQ=255)
                              gACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCa                                                                                                         >  1:5643113/1‑140 (MQ=255)
                              gACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCa                                                                                                         >  1:4028486/1‑140 (MQ=255)
                              gACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCa                                                                                                         >  1:9472928/1‑140 (MQ=255)
                                   tttATCTTACCCTTAAGATTTCAGTAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGAt                                                                                                    <  2:4647591/140‑1 (MQ=255)
                                   tttATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTaa                                                                                                                >  2:9503072/1‑128 (MQ=255)
                                   tttATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTaa                                                                                                                <  1:9503072/128‑1 (MQ=255)
                                   tttATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGAt                                                                                                    >  1:316713/1‑140 (MQ=255)
                                   tttATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGAt                                                                                                    >  1:7780464/1‑140 (MQ=255)
                                   tttATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGAt                                                                                                    <  2:9228559/140‑1 (MQ=255)
                                   tttATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGAt                                                                                                    >  1:630963/1‑140 (MQ=255)
                                   tttATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGAt                                                                                                    >  1:5499802/1‑140 (MQ=255)
                                   tttATCTTACCCTTAAGATTTCAGGAAGTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACTTTCCGCGATTTAAATGTTCCGATTTAAGATTACCCTCCATTTGATGCTTTTTAACTCTTAAAGATTCATAGAt                                                                                                    >  2:5216761/1‑140 (MQ=255)
                                     tATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCt                                                                                                  <  1:48728/140‑1 (MQ=255)
                                          tACCCTTAAGATTTCAGGAAATTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTAAATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGa                                                                                             >  2:1702992/1‑140 (MQ=255)
                                           aCCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTAt                                                                                                                       >  1:8844223/1‑113 (MQ=255)
                                           aCCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTAt                                                                                                                       <  2:8844223/113‑1 (MQ=255)
                                           aCCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGAc                                                                                            >  1:6351683/1‑140 (MQ=255)
                                           aCCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGAc                                                                                            >  1:2710248/1‑140 (MQ=255)
                                           aCCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGAc                                                                                            >  1:8651403/1‑140 (MQ=255)
                                           aCCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGAc                                                                                            >  2:8570957/1‑140 (MQ=255)
                                           aCCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGAc                                                                                            >  1:6818170/1‑140 (MQ=255)
                                           aCCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGAGTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGGTGAc                                                                                            >  2:5109969/1‑140 (MQ=255)
                                               ttAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGt                                                                                        <  1:7653009/140‑1 (MQ=255)
                                               ttAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGt                                                                                        <  2:6581815/140‑1 (MQ=255)
                                                tAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTc                                                                                       >  1:9766123/1‑140 (MQ=255)
                                                 aaGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTaa                                                                                                                >  2:9076297/1‑114 (MQ=255)
                                                 aaGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTaa                                                                                                                <  1:9076297/114‑1 (MQ=255)
                                                 aaGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCa                                                                                      >  1:8644119/1‑140 (MQ=255)
                                                 aaGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCa                                                                                      >  1:5722538/1‑140 (MQ=255)
                                                    aTTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTc                                                                                   <  2:7780464/140‑1 (MQ=255)
                                                      ttCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTa                                                                                                                 <  2:7554486/108‑1 (MQ=255)
                                                      ttCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCt                                                                                 <  2:266388/140‑1 (MQ=255)
                                                      ttCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCt                                                                                 >  1:3163906/1‑140 (MQ=255)
                                                      ttCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTGTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCt                                                                                 >  1:8150978/1‑140 (MQ=255)
                                                        cAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTACTATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCAGAGATCTGTTGACAAGTCACTCCTGc                                                                               >  1:9418388/1‑140 (MQ=255)
                                                        cAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGc                                                                               >  2:6921655/1‑140 (MQ=255)
                                                           gAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGAt                                                                            >  1:8975207/1‑140 (MQ=255)
                                                                   gCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTCCCCTACATTTGATGCTTTTTATCTCTTAAAGATTCCTAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGtt                                                                    >  2:3710396/1‑140 (MQ=255)
                                                                        tGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCGTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTct                                                               >  2:6549016/1‑139 (MQ=255)
                                                                                tCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTc                                                       >  1:5947002/1‑140 (MQ=255)
                                                                                 ccTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTCGCGTTCGTCAGCAATTTct                                                      >  2:7452322/1‑139 (MQ=255)
                                                                                 ccTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCa                                                      >  2:5555012/1‑140 (MQ=255)
                                                                                 ccTTTTTATATAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGATTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCATGCGATGTAGCGTTCGTCAGCAATTTCa                                                      >  2:7451979/1‑140 (MQ=255)
                                                                                  cTTTTTATTTAAATTTTACATTCGGCGATGTAAATGTTCGGTGTTTTTTGTTCCCTAGATTTGATGCTTGTTAGCTGTTTAAGAGTCTTTGATCTGTTGTCACGTCACTCCAGCGCTGTAGCGTTCGTGAGCACTTTcgg                                                     >  2:1089398/1‑138 (MQ=255)
                                                                                  cTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTa                                                                                                                 >  2:1974905/1‑80 (MQ=255)
                                                                                  cTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGtt                                                                                               <  1:1048775/98‑1 (MQ=255)
                                                                                   tttttATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGc                                                    >  1:1021591/1‑140 (MQ=255)
                                                                                    ttttATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCa                                                   <  2:2710248/140‑1 (MQ=255)
                                                                                    ttttATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCa                                                   <  2:8608281/140‑1 (MQ=255)
                                                                                     tttatttaAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAATGATTCATAGATCTGTTGACAAGTCACTACTGCGATGTAGCGTTCGTCAGCAATTTCAGCAt                                                  >  2:6942598/1‑140 (MQ=255)
                                                                                     tttatttaAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCAt                                                  >  2:4747578/1‑140 (MQ=255)
                                                                                         tttaAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATTCTTTTTATCTCTTAAAGATTCATATATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGAAATTTCAGCATAAAg                                              >  2:4487542/1‑140 (MQ=255)
                                                                                         aataAATTTTACATTCCGAGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTAAATCTCTTAAAGATTCAAAGATCTGTTGAAAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAg                                              >  2:7087513/3‑140 (MQ=255)
                                                                                          ttaAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGc                                             >  1:2034461/1‑140 (MQ=255)
                                                                                              aTTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAg                                         >  1:5044472/1‑140 (MQ=255)
                                                                                              aTTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAg                                         >  1:5044471/1‑140 (MQ=255)
                                                                                                     aTTCCGCGATGTAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTctgc                                  <  1:8172366/140‑1 (MQ=255)
                                                                                                         ctcgATGTAAATGTTCCGATTTAATATTTCCCTACATTTGTTGCTTTGTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCAATCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAATGCTGAGCTTctgctgaa                              >  2:4533871/3‑138 (MQ=255)
                                                                                                                tAAATGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATAtctc                       >  2:3259149/1‑140 (MQ=255)
                                                                                                                 aaaTGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTcc                      <  2:8229808/140‑1 (MQ=255)
                                                                                                                   aTGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCa                                                   <  2:8342609/109‑1 (MQ=255)
                                                                                                                   aTGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCa                                                   >  1:8342609/1‑109 (MQ=255)
                                                                                                                   aTGTTCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGa                    >  2:6118214/1‑140 (MQ=255)
                                                                                                                      ttCCGTTGTATTATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCGTAGATCTGTTGACATGTGTGTGCTGCGCTGTAGCGTTCGGCAGAAATTTCTGAATAATGCTGTGAGTGTGCGGCAAGATCTGCGAGCa                 >  2:7397119/1‑140 (MQ=255)
                                                                                                                      ttCCGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCa                 <  2:5643113/140‑1 (MQ=255)
                                                                                                                        ccGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTc                                                                                   >  1:379964/1‑72 (MQ=255)
                                                                                                                        ccGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATg               >  1:8729732/1‑140 (MQ=255)
                                                                                                                        ccGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATg               >  1:6899589/1‑140 (MQ=255)
                                                                                                                        ccGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATg               >  2:4050017/1‑140 (MQ=255)
                                                                                                                        ccGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATg               >  1:3019303/1‑140 (MQ=255)
                                                                                                                        ccGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATg               >  1:3796468/1‑140 (MQ=255)
                                                                                                                        ccGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATg               >  2:7087180/1‑140 (MQ=255)
                                                                                                                        ccGATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATg               >  2:6523940/1‑140 (MQ=255)
                                                                                                                        ccGATTTAATATTACCCTACAGTTGATGCTTTTTATCTATTAAAGTGTCATAGATCTGTTGTCAAGTCACTCCTGCGATGTAGCGTTCTTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATg               >  2:1958302/1‑140 (MQ=255)
                                                                                                                          gATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAATGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGtt             >  2:2588707/1‑140 (MQ=255)
                                                                                                                          gATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATa                                                                                                       >  1:6998549/1‑50 (MQ=255)
                                                                                                                          gATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGtt             >  1:9544268/1‑140 (MQ=255)
                                                                                                                          gATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGtt             >  1:8578914/1‑140 (MQ=255)
                                                                                                                          gATTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGtt             >  2:2588702/1‑140 (MQ=255)
                                                                                                                           aTTTAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTg            <  2:6304419/140‑1 (MQ=255)
                                                                                                                              tAATATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTg         >  1:4037284/1‑140 (MQ=255)
                                                                                                                               aaTATTACCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGa        >  1:7516215/1‑140 (MQ=255)
                                                                                                                                     aCCCTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTc  >  1:9835952/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                        
TTTATTAATAAAACGTGTCATTCTGATTAAGACCTTTTATCTTACCCTTAAGATTTCAGGAATTTTGGCTCATGGAAGAGTCCTTTTTATTTAAATTTTACATTCCGCGATGTAAATGTTCCGATTTAATATTACCTTACATTTGATGCTTTTTATCTCTTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTC  >  NZ_CP025268/1643713‑1643985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: