| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,762,540 | T→C | pseudogene (1000/1000 nt) | ldtE ← | L,D‑transpeptidase LdtE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,762,540 | 0 | T | C | 99.8% | 1537.1 / NA | 443 | pseudogene (1000/1000 nt) | ldtE | L,D‑transpeptidase LdtE |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (256/185); minor base A (0/1); total (257/186) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 443 total aligned reads displayed.
TTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATC > NZ_CP025268/1762403‑1762675 | cAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACt > 2:8038088/1‑140 (MQ=255) ctgctAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑ATTTTTTTGTCTGCCGTTTACCGCTACTGCGt < 2:1387586/140‑1 (MQ=255) tgctAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTc < 1:8141014/140‑1 (MQ=255) tgctAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTc < 1:2882678/140‑1 (MQ=255) tAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcg > 2:5756621/1‑140 (MQ=255) aaGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg < 1:2145260/140‑1 (MQ=255) aaGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg < 1:2469514/140‑1 (MQ=255) aGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGt < 2:2696619/140‑1 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 1:578345/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 1:6509833/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata < 1:8314972/140‑1 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 2:16548/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 2:5917498/1‑140 (MQ=255) cTCGTGCTAACAAGCGTATGGACAACATGGCTACGAAATACCGCAAGAAATAGTACATGTGAAGGGAATATTGGCGCACATTGTGCGCCA‑TTTTTTATGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTcc‑‑‑‑c > 2:3366067/1‑140 (MQ=255) tCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAAGACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑Ct < 2:2558145/140‑1 (MQ=255) tGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATCGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTAC‑‑‑‑CT‑TGc > 1:8855799/1‑140 (MQ=255) tGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGc > 2:2368931/1‑140 (MQ=255) tGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGc < 1:4130910/140‑1 (MQ=255) tGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑‑TTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCt < 2:6745589‑M1/140‑2 (MQ=255) gCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCt > 2:120388‑M1/1‑139 (MQ=255) gCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGAGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCt > 2:9455892‑M1/1‑139 (MQ=255) aaCCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctg < 2:8711628‑M1/140‑5 (MQ=255) aaCCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctg < 2:9193490‑M1/140‑5 (MQ=255) ccAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggt > 1:8302346‑M1/1‑134 (MQ=255) ccAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggt > 1:7127293‑M1/1‑134 (MQ=255) aGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttc > 2:879834‑M1/1‑132 (MQ=255) gCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttca < 2:4481848‑M1/140‑10 (MQ=255) gCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttca < 2:6975056‑M1/140‑10 (MQ=255) cGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTCACATATTCC‑‑‑‑CT‑TGCtctggttcac > 2:9592081‑M1/1‑130 (MQ=255) cGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcac > 2:2008225‑M1/1‑130 (MQ=255) cGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctgggtctc > 1:5199155‑M1/1‑130 (MQ=255) ggACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattc > 1:3682151‑M1/1‑125 (MQ=255) caacaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgc < 1:5929392‑M1/140‑19 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgct < 2:5071120‑M1/140‑22 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgct < 2:629312‑M1/140‑22 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgct > 1:4683888‑M1/1‑119 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgct > 1:4908377‑M1/1‑119 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgct > 2:2849293‑M1/1‑119 (MQ=255) ggCTACTATATACCGCAAGTAATAGTACCTGTGAAGTGAAAATTGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGGTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgac > 2:5465182‑M1/1‑116 (MQ=255) gCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgact < 1:7292522‑M1/140‑26 (MQ=255) ctactaAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGACTCGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactc > 2:7580873‑M1/1‑114 (MQ=255) ctaAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctac > 1:4342426‑M1/1‑111 (MQ=255) ctaAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CG‑TGCtctggttcaccattctgcgctgactctac > 1:9634479‑M1/1‑111 (MQ=255) aaTACCGCAAGTAATAGTACCTGTGAATTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactga < 2:8132308‑M1/140‑33 (MQ=255) aaTACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactga > 1:3916761‑M1/1‑108 (MQ=255) aaTACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactga > 1:74992‑M1/1‑108 (MQ=255) tACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaag > 2:2450962‑M1/1‑106 (MQ=255) aCCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaagg > 2:560474‑M1/1‑105 (MQ=255) ccGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggc > 1:1008931‑M1/1‑104 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcg > 2:8519798‑M1/1‑103 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcg > 2:6554308‑M1/1‑103 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:3057076‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:1961384‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:9840468‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGAAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 2:6051531‑M1/1‑101 (MQ=255) aaTAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgtaggcgcattgct > 1:4788782‑M1/1‑96 (MQ=255) aCCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgc > 2:6466319‑M1/1‑90 (MQ=255) aCCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGCTAACCGCTACTGCGTCACGCGTAACGTATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcaatgctggctgc > 1:508317‑M1/1‑90 (MQ=255) ccTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcg > 2:4731662‑M1/1‑89 (MQ=255) ccTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcg < 1:8659628‑M1/126‑38 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACTTATTCC‑‑‑‑CT‑TTCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg < 2:8339498‑M1/140‑54 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg < 1:5835781‑M1/140‑54 (MQ=255) gtgaagtgaaAATTGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:7847309‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg > 1:3246842‑M1/1‑87 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCTTAACATATTCC‑‑‑‑CT‑TGCtattgttaaacattctgcgctgactctactgaaggcgcatttctgtctgcggga > 2:7214919‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:2047083‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 2:4878279‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:1287772‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 2:3844391‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 2:8892865‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:4033890‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:4554418‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaa < 1:9200227‑M1/119‑34 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CG‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 2:409146‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGAGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 2:7905813‑M1/1‑86 (MQ=255) tgaagtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggag > 1:2409811‑M1/1‑85 (MQ=255) gaagtgaaAAATGGCGCACATTGTGCGCCA‑ATTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagt < 1:6714926‑M1/140‑57 (MQ=255) gtgaaAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCTCGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactcttgtgaaggcgcagtgctggctgcgggagttgg > 1:6351995‑M1/1‑81 (MQ=255) cgcACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctca > 1:5293845‑M1/1‑70 (MQ=255) gcACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcac < 2:2183016‑M1/140‑72 (MQ=255) cacaTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctgggtcaccattctgcgctgactctactgaaggcgcattgctggctgcgggaggtgctccactgctcacc > 1:6103188‑M1/1‑68 (MQ=255) acaTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccg < 1:6971378‑M1/140‑74 (MQ=255) acaTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccg < 2:6586872‑M1/140‑74 (MQ=255) caTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccga < 2:4267834‑M1/140‑75 (MQ=255) aTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTATCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 1:8447547‑M1/140‑76 (MQ=255) aTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 2:3086745‑M1/140‑76 (MQ=255) aTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 1:1585459‑M1/140‑76 (MQ=255) aTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 2:3991035‑M1/140‑76 (MQ=255) aTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 1:5427069‑M1/140‑76 (MQ=255) aTTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATAGTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 2:1085960‑M1/140‑76 (MQ=255) tttatttGTCTGCCGTTTACCGCTACTTCGTCACGCGAAACATATACCATATCTCTCGTTCACCATACAGCGCTGACTAAAATGAACTCGCAATGCTGGCTGCGGGAGTTGCACCACAGCTACCCGAAACCGCAtccact > 2:4790448/1‑135 (MQ=255) ttttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg < 2:5265720‑M1/140‑89 (MQ=255) ttttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg < 1:3478698‑M1/140‑89 (MQ=255) tttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgc > 1:4204594‑M1/1‑51 (MQ=255) ttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcc < 1:5623503‑M1/140‑91 (MQ=255) tGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccga < 1:8038088‑M1/140‑94 (MQ=255) gCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgata < 2:3682151‑M1/140‑99 (MQ=255) gCCGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgata < 2:3567517‑M1/140‑99 (MQ=255) cGTTTACCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgataca < 1:1154671‑M1/140‑101 (MQ=255) aCCGCTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaacccggataccctgcccgacgatacaacgcg > 2:8188340‑M1/1‑35 (MQ=255) | TTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCA‑TTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCC‑‑‑‑CT‑TGCTTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATACAACGCTTTATC > NZ_CP025268/1762403‑1762675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |