Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP025268 4,270,410 (T)8→7 intergenic (+181/+322) tyrB → / ← CXP41_RS22090 aromatic amino acid transaminase/protein YjbS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0252684,270,4030T.81.5% 615.4 / 178.4 217intergenic (+174/+329)tyrB/CXP41_RS22090aromatic amino acid transaminase/protein YjbS
Reads supporting (aligned to +/- strand):  ref base T (10/30);  new base . (39/137);  total (49/168)
Fisher's exact test for biased strand distribution p-value = 6.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.81e-01

Only 100 of 224 total aligned reads displayed.

AATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCTTTGCCTTATTGCCTGTGACTTTCTGAGA  >  NZ_CP025268/4270268‑4270538
                                                                                                                                       |                                                                                                                                       
 aTTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCGTATCCTGtttttt                                                                                                                                    >  1:3425207/1‑140 (MQ=255)
  ttAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGttttttt                                                                                                                                   >  1:4143697/1‑140 (MQ=255)
     acatcacgtccCTTCCACTCTGTATATATAGATGATTTTTGTGATGCCAACTTTCTACGTGATAGATAATAAAAGTTTTTAGTTATTTTATTGTTAAGATTATACAAATTATCTGGAATTCCTTATACTGTTTTTTTggg                                                                                                                                <  2:8846726/134‑1 (MQ=255)
     aaCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  1:3237504/140‑1 (MQ=255)
     aaCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  2:6472449/140‑1 (MQ=255)
     aaCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  2:7052322/140‑1 (MQ=255)
     aaCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  1:3912699/140‑1 (MQ=255)
     aaCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  1:9748321/140‑1 (MQ=255)
     aaCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  2:8507646/140‑1 (MQ=255)
     aaCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  1:11444163/140‑1 (MQ=255)
     aaCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  2:3640754/140‑1 (MQ=255)
     aaCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  2:11245664/140‑1 (MQ=255)
      aCTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATCATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAAGTATCTGGAATTCCTTATCCTGttttttgggtg                                                                                                                               <  2:4609141/140‑6 (MQ=255)
       cTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTg                                                                                                                             <  2:7789104/140‑1 (MQ=255)
       cTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTg                                                                                                                             <  2:6756852/140‑1 (MQ=255)
       cTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTg                                                                                                                             <  1:7146234/140‑1 (MQ=255)
       cTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTg                                                                                                                             <  1:10849503/140‑1 (MQ=255)
       cTGTCGTCGCTTTCACTCTGTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACTTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTAGCCCAATTATCTGGAATTCCTTAGCCTGTTGTTTTGGGTg                                                                                                                             <  2:1613150/140‑1 (MQ=255)
         gtcgtcGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGa                                                                                                                           <  1:10190249/140‑1 (MQ=255)
         gtcgtcGCTTTCACTCTTTCTTTAGAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGa                                                                                                                           <  2:7886597/140‑1 (MQ=255)
          tcgtcgCTTTCACTCTTTCTTTATAGATTATTTTTTTGATTCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAg                                                                                                                          >  1:4190228/1‑140 (MQ=255)
              cgCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGtaat                                                                                                                      <  2:10330520/140‑1 (MQ=255)
              cgCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGtaat                                                                                                                      <  1:3100622/140‑1 (MQ=255)
                 tttCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTaataat                                                                                                                   <  2:10902313/140‑1 (MQ=255)
                    cACTCTTTCTTTATAGATGATTTTTTTTATTCCAACGTTATAAGTGAGAGATAATAAACGTTTTTAGTTCTTTTATTGTTAATCTTATCCCAATTATCTGGAATTACTTATCCAGTTTTTTTGGGTGGAGTAATAATATc                                                                                                                >  1:1419722/1‑140 (MQ=255)
                    cACTCTTTCTTTATAGATGATTTTTTTGATTCCATCGTTCTACGTGAGAGATAAAAAAAGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAAATATCTGGAATTCCTTATCCTGTTTTTTTTGGTGGAGTAATAATTTc                                                                                                                >  1:8604603/1‑140 (MQ=255)
                    cACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTg                                                                                                                             <  1:7859787/127‑1 (MQ=255)
                     aCTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCt                                                                                                               <  1:898997/140‑1 (MQ=255)
                      ctctTTCTTTATCGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTCAGCTTATCCCAATTATCTGGAATTCCTGATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  1:8244810/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  1:8820973/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  2:3671800/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  1:7304226/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  2:4282268/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  1:9301458/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  1:9971285/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  2:3028770/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  2:9211596/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  1:11180951/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  1:3299976/140‑1 (MQ=255)
                      ctctTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  1:5578291/140‑1 (MQ=255)
                      ctcaTTCTTTATAGATGATTTTTTTGATGCCATCGGTCTACGTGAGAGATAATAATCGTTGTGATTTCTTTTATGGTTAAGCTTATCCCAATTATCTGGAATGCCGTATCCTGTTTTTATGGGTGGAGTAATAATTTATg                                                                                                              <  2:3890279/140‑1 (MQ=255)
                        ctttctttATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGca                                                                                                            <  2:2202022/140‑1 (MQ=255)
                        ctttctttATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGca                                                                                                            <  1:4438993/140‑1 (MQ=255)
                        ctttctttATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGca                                                                                                            <  2:5079380/140‑1 (MQ=255)
                        ctttctttATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGca                                                                                                            <  1:2600351/140‑1 (MQ=255)
                        ctttctttATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGca                                                                                                            <  2:4199924/140‑1 (MQ=255)
                         tttctttATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGtaat                                                                                                                      <  2:10610155/129‑1 (MQ=255)
                         tttctttATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGtaat                                                                                                                      >  1:10610156/1‑129 (MQ=255)
                         tttctttATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGtaat                                                                                                                      >  1:9790953/1‑129 (MQ=255)
                             tttATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCt                                                                                                       <  2:741687/140‑1 (MQ=255)
                                ataGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAAc                                                                                                    <  2:6012915/140‑1 (MQ=255)
                                ataGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAAc                                                                                                    <  2:7622994/140‑1 (MQ=255)
                                ataGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAAc                                                                                                    <  2:1419722/140‑1 (MQ=255)
                                 taGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTg                                                                                                              <  1:113119/129‑1 (MQ=255)
                                   gatgatTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGACTTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCat                                                                                                 >  1:10454547/1‑140 (MQ=255)
                                   gatgatTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTaataat                                                                                                                   <  2:9901925/122‑1 (MQ=255)
                                   gatgatTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGc                                                                                                             >  2:6868564/1‑128 (MQ=255)
                                   gatgatTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACAat                                                                                                 >  2:10578392/1‑140 (MQ=255)
                                                aTGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCatta                                                                                               <  1:2510970/129‑1 (MQ=255)
                                                aTGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCatta                                                                                               >  2:2510970/1‑129 (MQ=255)
                                                   ccATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTtaataat                                                                                 <  2:8454711/140‑1 (MQ=255)
                                                   ccATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTtaataat                                                                                 <  1:4746344/140‑1 (MQ=255)
                                                   ccATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTtaataat                                                                                 <  1:6883016/140‑1 (MQ=255)
                                                          tCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATc                                                                          <  2:7359563/140‑1 (MQ=255)
                                                              cGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCt                                                                                                       <  1:3744853/107‑1 (MQ=255)
                                                                 gagagaTAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAAc                                                                                                    >  2:4893338/1‑107 (MQ=255)
                                                                  agagaTAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGt                                                                  <  1:10255588/140‑1 (MQ=255)
                                                                    agaTAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTta                                                                                      <  2:3428258/118‑1 (MQ=255)
                                                                    agaTAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTa                                                                >  1:2703215/1‑140 (MQ=255)
                                                                       tactaaACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTGATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGa                                                             <  1:6716715/137‑1 (MQ=255)
                                                                       taataaACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGa                                                             <  1:11458168/140‑1 (MQ=255)
                                                                       taataaACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGa                                                             <  2:10119736/140‑1 (MQ=255)
                                                                        aataaACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                >  2:4183206/1‑73 (MQ=255)
                                                                        aataaACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                <  1:5629739/73‑1 (MQ=255)
                                                                        aataaACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                >  2:5629739/1‑73 (MQ=255)
                                                                            aaCGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTAGCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGaa                                                        <  2:4473386/140‑1 (MQ=255)
                                                                                   ttAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCt                                                 <  1:543114/140‑1 (MQ=255)
                                                                                   ttAGTTCTTTTATTGTTAAGCTTAGCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCt                                                 <  1:10412597/140‑1 (MQ=255)
                                                                                     aGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                >  2:9788466/1‑60 (MQ=255)
                                                                                          ttttATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCt                                          <  1:8154355/140‑1 (MQ=255)
                                                                                           tttATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTc                                         <  1:9483998/140‑1 (MQ=255)
                                                                                                    aaGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTggg                                                                                                                                >  2:10199765/1‑45 (MQ=255)
                                                                                                    aaGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCt                                                                                                       >  2:10725173/1‑69 (MQ=255)
                                                                                                     aGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCt                                                                                                       >  2:2758092/1‑68 (MQ=255)
                                                                                                     aGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCt                                                                                                       <  1:2758092/68‑1 (MQ=255)
                                                                                                      gCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCt                              <  2:4721141/140‑1 (MQ=255)
                                                                                                      gCTTATCCCAATGATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCt                              <  2:2534762/140‑1 (MQ=255)
                                                                                                      gCTTATCCCAATCATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCt                              <  2:11300418/140‑1 (MQ=255)
                                                                                                        gtATCCCAATTATCTGGAATTCCTGATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCttt                            <  1:2026393/139‑1 (MQ=255)
                                                                                                          aTCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTg                                                                                                                             >  1:1316333/1‑41 (MQ=255)
                                                                                                            cccAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCTTTGCCt                        >  1:4501382/1‑140 (MQ=255)
                                                                                                            cccAATTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCAAACCAATATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCAATATCCTAGAGAATATGCTTTGCCt                        >  2:6284497/1‑140 (MQ=255)
                                                                                                              cAATTATCTGGAATTCCCTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCTTTGCCTTa                      <  1:3841919/140‑1 (MQ=255)
                                                                                                                aTTATCTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCTTTGCCTTAtt                    <  2:8170498/140‑1 (MQ=255)
                                                                                                                     cTGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCTTTGCCTTATTTCCtg               >  1:6985152/1‑140 (MQ=255)
                                                                                                                      tGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGca                                                                                                            <  1:478470/46‑1 (MQ=255)
                                                                                                                      tGGAATTCCTTATCCTGTTTTTTTGGGTGGAGTAATAATTTCTGca                                                                                                            >  2:478470/1‑46 (MQ=255)
                                                                                                                                  tCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCTTTGCCTTATTGCCTGTGACTTTCTgaga  <  1:590695/140‑1 (MQ=255)
                                                                                                                                  tCCTGTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCTTTGCCTTATTGCCTGTGACTTTCTgaga  <  2:1509615/140‑1 (MQ=255)
                                                                                                                                   ccTGTTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTaa                                                                                                     <  2:11459582/41‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
AATTAAACTGTCGTCGCTTTCACTCTTTCTTTATAGATGATTTTTTTGATGCCATCGTTCTACGTGAGAGATAATAAACGTTGTTAGTTCTTTTATTGTTAAGCTTATCCCAATTATCTGGAATTCCTTATCCTGTTTTTTTTGGGTGGAGTAATAATTTCTGCACATCTAACCATTATTAAATTTAATAATAAGTATCGGGTTTGTTACGATAGAATATTTCTATATCCTCAAGAATATGCTTTGCCTTATTGCCTGTGACTTTCTGAGA  >  NZ_CP025268/4270268‑4270538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: