| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,175,450 | +G | pseudogene (483/632 nt) | comR ← | TetR family copper‑responsive transcriptional repressor ComR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,175,448 | 1 | . | G | 99.6% | 1855.6 / NA | 534 | pseudogene (485/632 nt) | comR | TetR family copper‑responsive transcriptional repressor ComR |
| Reads supporting (aligned to +/- strand): ref base . (1/1); major base G (206/324); minor base T (0/2); total (207/327) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 557 total aligned reads displayed.
CAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGC‑G‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAAG > NZ_CP025268/1175310‑1175582 | gTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGC‑g‑gg > 2:6297861/1‑139 (MQ=255) ttCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGC‑g‑gga > 1:2627461/1‑138 (MQ=255) ttCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCACCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACTGTGGGGC‑g‑ggg > 2:7619791/1‑138 (MQ=255) aTAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCcg < 2:1667950/140‑1 (MQ=255) tAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCcgc > 2:3203076/1‑140 (MQ=255) acaCGCACAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCcgcg < 1:7129219/138‑1 (MQ=255) aaaCGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCcgcg > 2:11190933/1‑140 (MQ=255) cGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCgcgcgc < 1:3731541/140‑1 (MQ=255) aaGACGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAAAAATACAATAAAGGAAGTCTGCCAGATGTGTCACGACACAGTGGGGCGG‑GATATCCCCGCGCGCTTGt > 2:10220272/1‑140 (MQ=255) cGTTCCGGCAATCTGCATCATTTTTTCCAGCGATGCACAGTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGtt < 2:1957366/140‑1 (MQ=255) cGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGtt < 1:2481556/140‑1 (MQ=255) ttCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGa > 1:10113998/1‑140 (MQ=255) cAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCa < 2:4643181/140‑1 (MQ=255) cAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCa < 2:1288678/140‑1 (MQ=255) cAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCa < 1:10365319/140‑1 (MQ=255) ttttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGt > 1:2225964/1‑140 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 1:6423023/140‑1 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 1:1858411/140‑1 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 1:8990496/140‑1 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 1:1251857/140‑1 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 2:4753339/140‑1 (MQ=255) tttCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTg < 1:3982661/140‑1 (MQ=255) ataccAGCGATTCACCTTCGCTTGCGCTGATCGACATCCCCTGAATACTACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGTGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTCCTGCAAAGTg < 2:3793033/137‑1 (MQ=255) tCCAGCTAGGCACCTGCGCGTGCGCTGATCGACATCCCCTGAAGAATACAATTAACGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTgcg < 2:8027618/140‑1 (MQ=255) tCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTgcg < 1:1527567/140‑1 (MQ=255) tCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTgcg > 1:6973674/1‑140 (MQ=255) tCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTgcg < 2:4022544/140‑1 (MQ=255) ccAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTgcgc < 1:6563146/140‑1 (MQ=255) aGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGctc < 2:8739436/140‑1 (MQ=255) aGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGctc < 1:9771190/140‑1 (MQ=255) cGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGAGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGAGCTTGTCGTTGACATAAAAACTGCAGCAAACTGCGCTCtt > 2:10595610/1‑140 (MQ=255) aTGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGc < 1:11391220/140‑1 (MQ=255) gCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCAt < 2:9097591/140‑1 (MQ=255) tCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATg > 2:2288661/1‑140 (MQ=255) cgcgTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATgg < 1:5143931/140‑1 (MQ=255) cgTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCg < 1:10562488/140‑1 (MQ=255) tGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTg > 1:961001/1‑140 (MQ=255) tGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTg > 2:4136856/1‑140 (MQ=255) cgcTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GCTTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGAt > 2:5636212/1‑140 (MQ=255) gATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCa < 2:3909421/140‑1 (MQ=255) gATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCCTGATTTCa < 2:1428104/140‑1 (MQ=255) gATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGATTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCa < 1:10758953/140‑1 (MQ=255) aTCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCaa > 2:2113707/1‑140 (MQ=255) tCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAAc < 1:9058532/140‑1 (MQ=255) aCATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTa < 1:3629916/140‑1 (MQ=255) tCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTg < 2:4505289/140‑1 (MQ=255) tCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTg < 2:8238944/140‑1 (MQ=255) ccTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCg > 2:10430099/1‑140 (MQ=255) ccTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCg > 1:6204065/1‑140 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 2:10909278/140‑1 (MQ=255) tGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGat < 1:4909949/140‑1 (MQ=255) gAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGAGCTTGTCGTTGACAAAAAAACTGCTGCAAAGTGCGCTCTTGCATCGAATGGCGTGATTTCAACGTATTGGCGata > 2:1157871/1‑140 (MQ=255) gAATAATACAATGAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGata < 1:5814439/140‑1 (MQ=255) aataatACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATAGCGTGATTTCAACGTATTGGCGatat > 1:6069794/1‑140 (MQ=255) ctaCAATTTAGGAATTCTGCCAGAGGTGTCACGTCACAGTGGGGCGG‑GATGTCCCCGCGCGCTTGTCGTTGACATATACACTGCGGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTcc < 2:6186752/139‑1 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAACACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 2:6476292/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 1:8593544/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 1:920247/1‑140 (MQ=255) taCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCt > 1:3295460/1‑140 (MQ=255) ccaagtcaGGAATTCTGCCAGATGTGTCACGTCACAGAGGGGCGG‑GATTTCCCCGCGCGCTTGGCGTTGACATTAAAACTGCTGCTAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTg < 1:8056190/133‑1 (MQ=255) aCAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTg < 1:9426380/140‑1 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAAta > 2:881608/1‑139 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 1:4719073/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 1:1754812/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 1:7972771/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 1:543369/1‑140 (MQ=255) ttAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATc > 1:2992862/1‑140 (MQ=255) tAAGGACTTCTGCCAGATGGGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCt < 2:9755588/140‑1 (MQ=255) tAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCt < 2:6101923/140‑1 (MQ=255) tAAGGAATTCAGCCAGATGTGTCACGTCACAGTGGTGCGG‑GATGTCACCGCGCGCGTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCAAGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCt < 2:11400417/140‑1 (MQ=255) aaGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTg > 1:7271877/1‑140 (MQ=255) ggAATTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTggg < 2:6815574/140‑1 (MQ=255) aaTTCTGCGAGATGGGTTTCGTCTCAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATCAAAAGTGCTGCATTGTGCGGTGTTGCATAGCATGTCGTGTTTTCAACGAATTGTCGATTTCTCGTGAATCTggggt < 2:7159182/140‑2 (MQ=255) aaTTCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTGGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGga < 2:2579613/140‑1 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAATCTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga > 2:8428223/1‑140 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga > 1:7561115/1‑140 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga > 2:5007050/1‑140 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga < 1:2399611/140‑1 (MQ=255) ttCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga < 2:340758/140‑1 (MQ=255) gtCTGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGgaga < 2:10739401/139‑1 (MQ=255) tGCCATATGTGTCTCGTCACAGTGGGGC‑GTGATTTCCCCGCGCTCTTGTCGTTGACATAAATACTGCTGCAAAGTGCGCTCTTGCATCGCATTGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAggg < 1:2809862/140‑1 (MQ=255) tGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAggg < 1:7714800/140‑1 (MQ=255) tGCCAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAggg < 2:7440310/140‑1 (MQ=255) ccAGATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGggtg > 1:8319660/1‑140 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAACACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:5887497/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:3023980/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:9392654/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 1:10005091/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:5323401/140‑1 (MQ=255) gATGTGTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGgtggtg < 2:173108/140‑1 (MQ=255) tgtgTCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCa > 1:11056432/1‑140 (MQ=255) gtgtCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAg < 1:4176114/140‑1 (MQ=255) gtgtCACGTCACAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAg < 2:10016856/140‑1 (MQ=255) acgtcacAGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAgttgtt < 2:7783363/140‑1 (MQ=255) cacaGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATc > 1:3397918/1‑140 (MQ=255) cacaGTGGGGCGG‑GATTTCCCCGCGCGATTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATc < 2:6891622/140‑1 (MQ=255) acaGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCa < 1:11341200/140‑1 (MQ=255) caGTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCAt > 1:8803575/1‑140 (MQ=255) gTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGa > 1:9260138/1‑140 (MQ=255) gTGGGGCGG‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGa > 1:4399980/1‑140 (MQ=255) | CAGTTCGGGCCATAAACGCAAAGTCGTTCCGGCAATCTGCATCAGTTTTTCCAGCGATGCACCTTCGCGTGCGCTGATCGACATCCCCTGAATAATACAATTAAGGAATTCTGCCAGATGTGTCACGTCACAGTGGGGC‑G‑GATTTCCCCGCGCGCTTGTCGTTGACATAAAAACTGCTGCAAAGTGCGCTCTTGCATCGCATGGCGTGATTTCAACGTATTGGCGATATCTCCTGAATCTGGGGAGAGGGTGGTGCAGTTGTTGATCATGAAG > NZ_CP025268/1175310‑1175582 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |