BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,873,836	(T)_5→6	pseudogene (67/1283 nt)	yeaH →	YeaH/YhbH family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,873,831	1	.	T	96.7%	2088.5 / 50.5	574	pseudogene (62/1283 nt)	yeaH	YeaH/YhbH family protein
Reads supporting (aligned to +/- strand): ref base . (12/7); new base T (354/196); total (367/207)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 634 total aligned reads displayed.

GACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑T‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATC  >  NZ_CP025268/1873696‑1873964

gACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑t                                                                                                                                    >  2:3162380/1‑140 (MQ=255)

 accgCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCCTATGACCTGGTTTAGTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑tg                                                                                                                                   >  2:5203717/4‑139 (MQ=255)

 aCAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCCGC‑G‑t‑tt‑tt                                                                                                                                   >  1:235376/1‑140 (MQ=255)

 aCAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑tt                                                                                                                                   >  1:4547197/1‑140 (MQ=255)

 aCAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑tt                                                                                                                                   >  2:9099680/1‑140 (MQ=255)

   aGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑ttta                                                                                                                                 >  1:5801632/1‑138 (MQ=255)

   aGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑ttta                                                                                                                                 <  2:1384769/140‑3 (MQ=255)

    gCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑tttac                                                                                                                                >  1:670154/1‑137 (MQ=255)

    gCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑tttac                                                                                                                                >  1:345456/1‑137 (MQ=255)

     cgcaCCGTGGGCCTGAGCCGCGGCAACACAGGCTCAGCCATCAGTTCGCAACTGTACTACGGGGGGCAGATGACCTGGTTAATTGACCGGCGTCTTAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑T‑TT‑TT‑aacg                                                                                                                              <  2:9305292/137‑4 (MQ=255)

     cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑tttacg                                                                                                                               >  1:4988957/1‑136 (MQ=255)

     cGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑t‑tt‑tttacg                                                                                                                               >  1:2795026/1‑136 (MQ=255)

       aaCCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCCTGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGcc                                                                                                                             >  2:8022623/1‑140 (MQ=255)

                 cTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAgc                                                                                                                   >  1:528152/1‑140 (MQ=255)

                 cTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAgc                                                                                                                   <  1:8670285/140‑1 (MQ=255)

                    agaAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCa                                                                                                                >  1:2967447/1‑140 (MQ=255)

                    agaAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCa                                                                                                                >  2:3629218/1‑140 (MQ=255)

                         cGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTa                                                                                                           >  1:4648272/1‑140 (MQ=255)

                           gCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTaaa                                                                                                         <  2:6457024/140‑1 (MQ=255)

                             aaCACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACa                                                                                                       <  1:1113959/140‑1 (MQ=255)

                                 caGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCg                                                                                                   <  1:2246340/140‑1 (MQ=255)

                                 caGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCg                                                                                                   <  1:9515772/140‑1 (MQ=255)

                                   ggCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCACCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGAt                                                                                                 >  1:5561767/1‑140 (MQ=255)

                                       tAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGAAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTcc                                                                                             <  2:10849852/140‑1 (MQ=255)

                                         gCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGa                                                                                           <  1:1580745/140‑1 (MQ=255)

                                         gCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGa                                                                                           >  1:10653560/1‑140 (MQ=255)

                                           ctACAGTTGGCAAATGTAGTCCTGGGGGACTAAGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GAT‑TT‑TT‑ACGCCGTTATAAAGCGCACATTCAACAGTCGAGCTCCGAgg                                                                                         <  2:7125949/139‑1 (MQ=255)

                                           aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                         <  1:3944717/140‑1 (MQ=255)

                                           aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                         <  2:4825315/140‑1 (MQ=255)

                                           aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAgg                                                                                         <  2:9652784/140‑1 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTtata                                                                                                                       >  1:3684342/1‑107 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATCAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  1:11302452/1‑140 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGc                                                                                        >  2:6838331/1‑138 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  1:4034217/1‑140 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  2:279600/1‑140 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  1:3538029/1‑140 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  1:3181899/1‑140 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  2:7017572/1‑140 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  1:9246020/1‑140 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  2:8763171/1‑140 (MQ=255)

                                              cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCa                                                                                      >  1:8317715/1‑140 (MQ=255)

                                                  tGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaa                                                                                  >  1:9885259/1‑140 (MQ=255)

                                                   ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaat                                                                                 >  2:2076293/1‑140 (MQ=255)

                                                   ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCAGtaat                                                                                 >  2:7737647/1‑140 (MQ=255)

                                                   ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATAGACCGGCTTCTTAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑T‑TTATT‑ACGCCGTTATTAAGCGCCAAGTAAACAGTCGATCTCCGAGGCCATtaat                                                                                 >  2:10235382/1‑140 (MQ=255)

                                                    gCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGATATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATtaata                                                                                >  1:1749867/1‑140 (MQ=255)

                                                      aaaTGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAg                                                                              <  2:9852947/140‑1 (MQ=255)

                                                      aaaTGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAg                                                                              <  1:2530441/140‑1 (MQ=255)

                                                         tGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGt                                                                           >  1:5944027/1‑140 (MQ=255)

                                                            agtaCGGGGGGCATATGACCTGTTTTATTGACCGGCGTCTGAACGGCAAAATCAAAAGCATGGTGAATAGCCAGC‑G‑TCTT‑TG‑ACGCCGTTATAAAGCGGAAATTAATCAGTCGATCTCCGATGCCATTAATATGCGTTCg                                                                        <  2:4523111/140‑1 (MQ=255)

                                                             gtaCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCgg                                                                       >  2:3331522/1‑140 (MQ=255)

                                                               aCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtg                                                                     >  2:5009463/1‑140 (MQ=255)

                                                               aCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtg                                                                     >  2:190905/1‑140 (MQ=255)

                                                                cGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtga                                                                    <  1:7575831/140‑1 (MQ=255)

                                                                cGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtga                                                                    <  2:6135246/140‑1 (MQ=255)

                                                                   ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGGATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactg                                                                 >  1:6995830/1‑140 (MQ=255)

                                                                   ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactg                                                                 >  1:8028845/1‑140 (MQ=255)

                                                                   ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactg                                                                 >  1:4763818/1‑140 (MQ=255)

                                                                     ggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactgac                                                               >  2:11212190/1‑140 (MQ=255)

                                                                     ggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGtgactgac                                                               >  1:10816938/1‑140 (MQ=255)

                                                                        atatGACCTGGTTTATTGACCGGCGTCTGAACGGCAAATACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAATGCGCAAATTAAACAGTCGATCTCCGTGGCCATTAATAAGCGGTCGGTGACTGACGTc                                                            >  2:8972928/1‑140 (MQ=255)

                                                                        atatGACCTGGTTGATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTc                                                            >  1:8920073/1‑140 (MQ=255)

                                                                            gACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACa                                                        <  1:7281533/140‑1 (MQ=255)

                                                                             aCCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAg                                                       >  2:2260889/1‑140 (MQ=255)

                                                                             aCCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAg                                                       >  1:10162636/1‑140 (MQ=255)

                                                                               cTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGTCTGACGTCGACAgcg                                                     >  1:512201/1‑140 (MQ=255)

                                                                                tGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcgg                                                    >  1:6286961/1‑140 (MQ=255)

                                                                                  gTTTATTGACCGGCTTCTGAACGGCAAAAACAAAAGAATGGTTAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGAGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  >  2:8624322/1‑140 (MQ=255)

                                                                                  gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  <  2:10442780/140‑1 (MQ=255)

                                                                                  gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  <  2:1584544/140‑1 (MQ=255)

                                                                                  gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  >  2:2453441/1‑140 (MQ=255)

                                                                                  gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  <  1:9422612/140‑1 (MQ=255)

                                                                                  gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  <  1:3310526/140‑1 (MQ=255)

                                                                                  gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAgcggcg                                                  <  2:4182822/140‑1 (MQ=255)

                                                                                  gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGGGATAATGCGCAAATTCAACAGTCGATCTCCGAGGCCATTATTACGCGTTCGGTGACTGACGTCGACAgcggcg                                                  >  2:5930192/1‑140 (MQ=255)

                                                                                     tATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAAt                                               >  2:3830771/1‑140 (MQ=255)

                                                                                      aTTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATc                                              <  1:3812382/140‑1 (MQ=255)

                                                                                       ttGACCGGCGTCTGAACGGCAAAAACAAATGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCAGTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATcc                                             >  1:146068/1‑140 (MQ=255)

                                                                                       ttGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATcc                                             >  1:11020290/1‑140 (MQ=255)

                                                                                       ttGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATcc                                             >  2:5823126/1‑140 (MQ=255)

                                                                                       ttGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATcc                                             >  1:6446686/1‑140 (MQ=255)

                                                                                        tGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCg                                            >  1:4126769/1‑140 (MQ=255)

                                                                                         gACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGt                                           >  1:11440859/1‑140 (MQ=255)

                                                                                            cGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTATACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATc                                        >  2:11454789/1‑140 (MQ=255)

                                                                                            cGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATc                                        >  1:8108054/1‑140 (MQ=255)

                                                                                             ggCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAACGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATcc                                       >  2:7501129/1‑140 (MQ=255)

                                                                                               cGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCAt                                     <  1:4363167/140‑1 (MQ=255)

                                                                                                    gAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCa                                <  2:4665879/140‑1 (MQ=255)

                                                                                                      aCGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACg                              <  2:8304940/140‑1 (MQ=255)

                                                                                                        ggCTAAAACAAAAGCAGGGTGAATCGCCAGC‑G‑T‑TT‑TTAACGCCGTTATAAAGCGCAAATTAAACTGTCGATCTCCGAGGCCATTAATAAGCGTACGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGa                            <  2:1773510/140‑1 (MQ=255)

                                                                                                        ggCAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGa                            <  1:10505775/140‑1 (MQ=255)

                                                                                                          cAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAg                          >  1:972696/1‑140 (MQ=255)

                                                                                                          cAAAAACAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAg                          >  1:7180108/1‑140 (MQ=255)

                                                                                                             aaaCAAAAGCATGGTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTAGAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGGGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGata                       >  2:10601401/1‑140 (MQ=255)

                                                                                                                   aatcATGTTTAATCGCCAGCTT‑T‑TT‑TT‑ACGCAGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTTACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCg                 <  2:11298092/137‑1 (MQ=255)

                                                                                                                          gTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGAt          <  1:2185081/140‑1 (MQ=255)

                                                                                                                          gTGAATCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGAt          <  2:5690201/140‑1 (MQ=255)

                                                                                                                            gactCGCCAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTACACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGt        <  1:10012631/137‑1 (MQ=255)

                                                                                                                            gAATCGCCAGC‑G‑T‑TTATT‑CCGCCGTTAGAAAGCGCAAATTACACAGTCGATCTCCGAGGCCATTAAGAAGCGTTCGGGGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGAGATTCGCGAACCGATGt        <  2:5439279/140‑1 (MQ=255)

                                                                                                                                  ccAGC‑GTT‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTtcatc  <  1:1973452/140‑1 (MQ=255)

GACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGC‑G‑T‑TT‑TT‑ACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGCGTTCGGTGACTGACGTCGACAGCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATC  >  NZ_CP025268/1873696‑1873964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`