BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,292,596	(C)_6→7	pseudogene (361/2531 nt)	yejO ←	autotransporter YejO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,292,590	1	.	C	97.3%	1628.7 / 31.8	481	pseudogene (367/2531 nt)	yejO	autotransporter YejO
Reads supporting (aligned to +/- strand): ref base . (5/8); new base C (200/268); total (205/276)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 512 total aligned reads displayed.

ACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NZ_CP025268/2292451‑2292723

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACgg                                                                                                                                         >  1:4640968/1‑140 (MQ=255)

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACgg                                                                                                                                         >  2:5668931/1‑140 (MQ=255)

     gaCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑ccccc                                                                                                                                   <  1:1465181/140‑1 (MQ=255)

          tttGTTCCGACTACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAGATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑ccccc‑ccatc                                                                                                                             >  1:6276295/1‑136 (MQ=255)

          tttGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑ccccc‑ccatc                                                                                                                             >  1:3108998/1‑136 (MQ=255)

               tCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCttttt                                                                                                                         >  2:4298480/1‑140 (MQ=255)

                  gAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCaa                                                                                                                      >  1:7301792/1‑140 (MQ=255)

                   aaTACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAAc                                                                                                                     >  2:10338644/1‑140 (MQ=255)

                        cTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CCTGTTTTTCAACGTTTa                                                                                                                >  1:9171185/1‑140 (MQ=255)

                        cTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTa                                                                                                                >  1:7897194/1‑140 (MQ=255)

                        cTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTa                                                                                                                >  2:5272222/1‑140 (MQ=255)

                        cTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTa                                                                                                                >  1:1367149/1‑140 (MQ=255)

                             tGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTATAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:6898741/140‑1 (MQ=255)

                              ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGcgcc                                                                                                          <  1:6370215/140‑1 (MQ=255)

                              ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGcgcc                                                                                                          <  2:2544891/140‑1 (MQ=255)

                              ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTGAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGcgcc                                                                                                          <  2:8933787/140‑1 (MQ=255)

                               gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGcgccc                                                                                                         <  2:4165288/140‑1 (MQ=255)

                               gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGcgccc                                                                                                         <  2:1791257/140‑1 (MQ=255)

                               gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCATTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGcgccc                                                                                                         <  2:3254104/140‑1 (MQ=255)

                                cccGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGcgcccg                                                                                                        <  2:7971716/140‑1 (MQ=255)

                                cccGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGcgcccg                                                                                                        >  1:11285633/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTTCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  2:4018190/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGcgcccgccgt                                                                                                    >  2:7839597/1‑138 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  2:9806611/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  1:1087831/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    <  1:4509000/140‑1 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  1:525032/1‑140 (MQ=255)

                                    cgTGGTTGTGTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTGTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  2:8081573/1‑140 (MQ=255)

                                        gttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTATTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAAt                                                                                                <  1:1300901/140‑1 (MQ=255)

                                         ttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTATGCGCCCGCCTTTAATc                                                                                               <  1:10839421/140‑1 (MQ=255)

                                          tgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  1:8762609/140‑1 (MQ=255)

                                            ttttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            <  1:11192155/140‑1 (MQ=255)

                                                 aTAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATc                                                                                       >  1:10701391/1‑140 (MQ=255)

                                                   aGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCAt                                                                                     >  1:1605610/1‑140 (MQ=255)

                                                   aGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTGTTTCAACGATTAAGCGCCCGCCGTTAGTCGTGGTATCag                                                                                     >  2:7139524/1‑139 (MQ=255)

                                                      aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                                                  >  2:2275869/1‑140 (MQ=255)

                                                      aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                                                  >  1:379995/1‑140 (MQ=255)

                                                      aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                                                  <  1:695466/140‑1 (MQ=255)

                                                      aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCATTGTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                                                  >  2:9846246/1‑140 (MQ=255)

                                                         gCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  1:226570/140‑1 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCTAATGCAAATCGCCCCTCTTTATGCTCCAGAAGTCCTGCCTGGTCGATAGCGTCATAGGCGGCCCCCC‑CATCTGTGTCAACGAGTATGCGCCGGCGGTGAATCGTGGTATCTTTCGCTgc                                                                              >  2:4921285/1‑140 (MQ=255)

                                                            tGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcgc                                                                            <  1:11418147/140‑1 (MQ=255)

                                                              cTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCATTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa                                                                          <  2:8275147/140‑1 (MQ=255)

                                                                 tCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  1:7493163/140‑1 (MQ=255)

                                                                  cTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaaa                                                                      >  1:3295903/1‑140 (MQ=255)

                                                                  cTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCGTTAATCGTGGTATCATTCGCTGCGCCATaca                                                                      >  2:1444457/1‑138 (MQ=255)

                                                                    gATCTACCGAAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCATTTTCGATAGAGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAcc                                                                    <  1:4223157/140‑1 (MQ=255)

                                                                        tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTa                                                                >  2:2154985/1‑140 (MQ=255)

                                                                         aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               <  2:1048054/140‑1 (MQ=255)

                                                                          ccGCAAATGCAAATCCCCCCTCGTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc                                                              >  2:3496445/1‑140 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTACCCTCCAGTAGTCCTCCCTTTTCGCTAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:8627113/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:2741942/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  1:8561255/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  1:5481523/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTGTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAAAGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:10793333/140‑1 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGGCCTCCCTTTTCGATCGCGACAAAGACGGCCCCCC‑CATCATTTTCACCGATTAAGCGCCCGCAGTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:1156925/140‑1 (MQ=255)

                                                                             caaattcaaagCCCCCCTCTTTACCCTCCAGTAGTCCTCCCTTTGGGATAGAGACAAAGACGG‑CCCCCACATCTTTTTCAACGATTAAGCTCCCGCCTTTAATCGTGGTATCATTCGCTGCTCCATTAACCTGTAGcaca                                                           <  2:10880901/140‑1 (MQ=255)

                                                                             caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcaca                                                           <  1:9555122/140‑1 (MQ=255)

                                                                               aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACAcc                                                         >  1:10229493/1‑140 (MQ=255)

                                                                                atgcaactCCCCCCTCGTTACCCTCCCGTAGGCCTCCCTTGTCGATAGCGACAAAGACGGCCCCCC‑CCTCTTTGTCAACGATTACGCGCCCGCCTTTAATCGGGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCa                                                        <  2:698834/140‑1 (MQ=255)

                                                                                atgcaaatCCCCCCTCTTTCACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCa                                                        <  2:7609245/140‑1 (MQ=255)

                                                                                 tgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCat                                                       >  1:4892006/1‑140 (MQ=255)

                                                                                       tCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGa                                                 <  2:5757347/140‑1 (MQ=255)

                                                                                         cccccTCATTAAACTCCAGTAGTCCTACCTTATCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAAAGATTAAGCTCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc                                               <  2:10086399/140‑1 (MQ=255)

                                                                                          ccccTCTTTCACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCGGTAGCACACCATTATTGAGCg                                              <  1:5817686/140‑1 (MQ=255)

                                                                                          ccccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                                              <  1:1745624/140‑1 (MQ=255)

                                                                                              tctTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGt                                          <  1:10420751/140‑1 (MQ=255)

                                                                                                        ccAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGcc                                >  1:53928/1‑140 (MQ=255)

                                                                                                         cAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  2:11199041/1‑140 (MQ=255)

                                                                                                         cAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  1:4734648/1‑140 (MQ=255)

                                                                                                          agtagtCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCTCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgc                              >  2:9436473/1‑140 (MQ=255)

                                                                                                          agtagtCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgc                              >  1:9774909/1‑140 (MQ=255)

                                                                                                              gtCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          >  2:546056/1‑140 (MQ=255)

                                                                                                              gtCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          <  1:2844288/140‑1 (MQ=255)

                                                                                                              gtCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATNCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          <  1:6118207/140‑1 (MQ=255)

                                                                                                              ctcctccCTATTCGACCGCGACAAAGACGGCCCCCC‑CCTCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATGCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          <  2:5900581/139‑1 (MQ=255)

                                                                                                               tcctccCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAc                         >  1:3642356/1‑140 (MQ=255)

                                                                                                               tcctccCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAc                         >  1:10113952/1‑140 (MQ=255)

                                                                                                                 ctccCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  2:12556/1‑140 (MQ=255)

                                                                                                                 ctccCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  2:5344078/1‑140 (MQ=255)

                                                                                                                 ctccCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  2:6734336/1‑140 (MQ=255)

                                                                                                                 ctccCTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTGTACAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  2:6479899/1‑140 (MQ=255)

                                                                                                                   cccTTTTCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     >  1:8500443/1‑140 (MQ=255)

                                                                                                                       tttCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGa                 <  2:3085351/140‑1 (MQ=255)

                                                                                                                         tCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  1:9350584/140‑1 (MQ=255)

                                                                                                                         tCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  1:4025771/140‑1 (MQ=255)

                                                                                                                         tCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  1:999300/140‑1 (MQ=255)

                                                                                                                         tCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  2:4640968/140‑1 (MQ=255)

                                                                                                                         tCGATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  1:7097478/140‑1 (MQ=255)

                                                                                                                         tCGATAGCGACAAAGACGGCCCCCC‑CATCATTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  1:8249586/140‑1 (MQ=255)

                                                                                                                           gATAGCGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACaa             <  1:4275001/140‑1 (MQ=255)

                                                                                                                                cGACAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGa        >  1:8098138/1‑140 (MQ=255)

                                                                                                                                  aCAAAGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATa      >  2:7355405/1‑140 (MQ=255)

                                                                                                                                    aaaGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAAc    <  1:6732025/140‑1 (MQ=255)

                                                                                                                                      cgACGGCCCCCC‑CATCCTTGTCAACGATTAAGCGCCCGCCTTGTATCGTGGTACCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTTGTTTGCCGGGCCACCCATTTGAACAATTTGATAACCg  <  2:9692667/139‑1 (MQ=255)

                                                                                                                                      aGACGGCCCCCC‑CATCTTTTTCCACGATTCAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATGATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:3730078/140‑1 (MQ=255)

                                                                                                                                      aGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:1960567/140‑1 (MQ=255)

                                                                                                                                      aGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:608797/140‑1 (MQ=255)

                                                                                                                                      aGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:1880960/140‑1 (MQ=255)

                                                                                                                                      aGACGGCCCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTATGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:2047464/140‑1 (MQ=255)

ACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCC‑CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NZ_CP025268/2292451‑2292723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`